Erratum: The fugitive LTR retrotransposon from the genome of the human blood fluke, Schistosoma mansoni (International Journal for Parasitology (2004) 34 (1365-1375) DOI: 10.1016/j.ijpara.2004.08.007);The fugitive LTR retrotransposon from the genome of the human blood fluke, Schistosoma mansoni

International Journal for Parasitology

Volumn 34, Issue 12, 2004, Pages 1365-1375

  Laha, Thewarach ^a   Loukas, Alex ^b   Smyth, Danielle J ^b   Copeland, Claudia S ^c   Brindley, Paul J ^c  

^a KHON KAEN UNIVERSITY   (Thailand)

^b QIMR BERGHOFER MEDICAL RESEARCH INSTITUTE   (Australia)

^c Department of Tropical Medicine   (United States)

Author keywords

Genome; Gulliver; Mobile genetic element; Retrotransposon; Reverse transcriptase; Schistosome

Indexed keywords

INTEGRASE; POL PROTEIN; PROTEINASE; RIBONUCLEASE H; RNA DIRECTED DNA POLYMERASE;

PARASITOLOGY;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BIOINFORMATICS; CLADISTICS; CONTROLLED STUDY; DEVELOPMENTAL STAGE; GENE SEQUENCE; GENETIC TRANSCRIPTION; GENOME; LONG TERMINAL REPEAT; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PROTEIN DOMAIN; PROTEIN MOTIF; RETROPOSON; SCHISTOSOMA JAPONICUM; SCHISTOSOMA MANSONI; SEQUENCE ALIGNMENT; SOUTHERN BLOTTING;

BACTERIA (MICROORGANISMS); FALCO COLUMBARIUS; PARALICHTHYS DENTATUS; SCHISTOSOMA; SCHISTOSOMA JAPONICUM; SCHISTOSOMA MANSONI; SCHISTOSOMATIDAE;

EID: 7944222696     PISSN: 00207519     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijpara.2005.02.001     Document Type: Erratum

References (46)

1. H. Abe, F. Ohbayashi, T. Sugasaki, M. Kanehara, T. Terada, T. Shimada, S. Kawai, K. Mita, Y. Kanamori, M.T. Yamamoto, and T. Oshiki Two novel Pao-like retrotransposons (Kamikaze and Yamato) from the silkworm species Bombyx mori and B. mandarina: common structural features of Pao-like elements Mol. Genet. Genomics 265 2001 375 385
2. H. Ackerman, I. Udalova, J. Hull, and D. Kwiatkowski Evolution of a polymorphic regulatory element in interferon-gamma through transposition and mutation Mol. Biol. Evol. 19 2002 884 890
3. J.D. Boeke, and V.G. Corces Transcription and reverse transcription of retrotransposons Annu. Rev. Microbiol. 43 1989 403 434
4. N.J. Bowen, and J.G. McDonald Genomic analysis of Caenorhabditis elegans reveals ancient families of retrovirus-like elements Genome Res. 9 1999 924 935
5. J.P. Boyle, and T.P. Yoshino Gene manipulation in parasitic helminths Int. J. Parasitol. 33 2003 1259 1268
6. P.J. Brindley, T. Laha, D.P. McManus, and A. Loukas Mobile genetic elements colonizing the genomes of metazoan parasites Trends Parasitol. 19 2003 79 87
7. B. Brouha, C. Meischl, E. Ostertag, M. de Boer, Y. Zhang, H. Neijens, D. Roos, and H.H. Kazazian Jr. Evidence consistent with human L1 retrotransposition in maternal meiosis I Am. J. Hum. Genet. 71 2002 327 336
8. P. Capy, R. Vitalis, T. Langin, D. Higuet, and C. Bazin Relationships between transposable elements based upon the integrase-transposase domains: is there a common ancestor? J. Mol. Evol. 42 1996 359 368
9. C.S. Copeland, P.J. Brindley, O. Heyers, S.F. Michael, D.A. Johnston, D.L. Williams, A.C. Ivens, and B.H. Kalinna Boudicca, a retrovirus-like long terminal repeat retrotransposon from the genome of the human blood fluke Schistosoma mansoni J. Virol. 77 2003 6153 6166
10. C.S. Copeland, O. Heyers, B.H. Kalinna, A. Bachmair, P.F. Stadler, I.L. Hofacker, and P.J. Brindley Structural and evolutionary analysis of the transcribed sequence of Boudicca, a Schistosoma mansoni retrotransposon Gene 329 2004 103 114
11. R. DeMarco, A.T. Kowaltowski, A.A. Machado, M.B. Soares, C. Gargioni, T. Kawano, V. Rodrigues, A.M. Madeira, R.A. Wilson, C.F. Menck, J.C. Setubal, E. Dias-Neto, L.C. Leite, and S. Verjovski-Almeida Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni J. Virol. 78 2004 2967 2978
12. A.C. Drew, and P.J. Brindley A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates Mol. Biol. Evol. 14 1997 602 610
13. A.C. Drew, D.J. Minchella, L.T. King, D. Rollinson, and P.J. Brindley SR2 elements, non-long terminal repeat retrotransposons of the RTE-1 lineage from the human blood fluke Schistosoma mansoni Mol. Biol. Evol. 16 1999 1256 1269
14. N.M. El-Sayed, D. Bartholomeu, A. Ivens, D.A. Johnston, and P.T. LoVerde Advances in schistosome genomics Trends Parasitol. 20 2004 154 157
15. D. Engels, L. Chitsulo, A. Montresor, and L. Savioli The global epidemiological situation of schistosomiasis and new approaches to control and research Acta Trop. 82 2002 139 146
16. B.W. Foulk, G. Pappas, Y. Hirai, H. Hirai, and D.L. Williams Adenylosuccinate lyase of Schistosoma mansoni: gene structure, mRNA expression, and analysis of the predicted peptide structure of a potential chemotherapeutic target Int. J. Parasitol. 32 2002 1487 1495
17. A. Garel, P. Nony, and J.C. Prudhomme Structural features of mag, a gypsy-like retrotransposon of Bombyx mori, with unusual short terminal repeats Genetica 93 1994 125 137
18. L.A. Garraway, L.R. Tosi, Y. Wang, J.B. Moore, D.E. Dobson, and S.M. Beverley Insertional mutagenesis by a modified in vitro Ty1 transposition system Gene 198 1997 27 35
19. J. Gonsky, E. Bacharach, and S.P. Goff Identification of residues of the Moloney murine leukemia virus nucleocapsid critical for viral DNA synthesis in vivo J. Virol. 75 2001 2616 2626
20. T. Hall BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucl. Acids Symp. Ser. 41 1999 95 98
21. L. Haren, B. Ton-Hoang, and M. Chandler Integrating DNA: transposases and retroviral integrases Annu. Rev. Microbiol. 53 1999 245 281
22. O. Heyers, A.K. Walduck, P.J. Brindley, W. Bleiss, R. Lucius, T. Dorbic, B. Wittig, and B.H. Kalinna Schistosoma mansoni miracidia transformed by particle bombardment infect Biomphalaria glabrata snails and develop into transgenic sporocysts Exp. Parasitol. 105 2003 174 178
23. W. Hu, Q. Yan, D.K. Shen, F. Liu, Z.D. Zhu, H.D. Song, X.R. Xu, Z.J. Wang, Y.P. Rong, L.C. Zeng, J. Wu, X. Zhang, J.J. Wang, X.N. Xu, S.Y. Wang, G. Fu, X.L. Zhang, Z.Q. Wang, P.J. Brindley, D.P. McManus, C.L. Xue, Z. Feng, Z. Chen, and Z.G. Han Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource Nat. Genet. 35 2003 139 147
24. Z. Ivics, P.B. Hackett, R.H. Plasterk, and Z. Izsvak Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells Cell 91 1997 501 510
25. H.H. Kazazian Jr. Mobile elements: drivers of genome evolution Science 303 2004 1626 1632
26. T. Laha, A. Loukas, C.K. Verity, D.P. McManus, and P.J. Brindley Gulliver, a long terminal repeat retrotransposon from the genome of the oriental blood fluke Schistosoma japonicum Gene 264 2001 59 68
27. M.C. Le Paslier, R.J. Pierce, F. Merlin, H. Hirai, W. Wu, D.L. Williams, D. Johnston, P.T. LoVerde, and D. Le Paslier Construction and characterization of a Schistosoma mansoni bacterial artificial chromosome library Genomics 65 2000 87 94
28. H.S. Malik, W.D. Burke, and T.H. Eickbush The age and evolution of non-LTR retrotransposable elements Mol. Biol. Evol. 16 1999 793 805
29. C. Meric, and S.P. Goff Characterization of Moloney murine leukemia virus mutants with single-amino-acid substitutions in the Cys-His box of the nucleocapsid protein J. Virol. 63 1989 1558 1568
30. M.E. Morales, B.H. Kalinna, O. Heyers, A. Schulmeister, V.H. Mann, C.S. Copeland, A. Loukas, and P.J. Brindley Genomic organization of the Schistosoma mansoni aspartic protease gene, a platyhelminth orthologue of mammalian lysosomal cathepsin D Gene 338 2004 99 109
31. L.H. Pearl, and W.R. Taylor A structural model for the retroviral proteases Nature 329 1987 351 354
32. A. Rajkovic, R.E. Davis, N. Simonsen, and F.M. Rottman A spliced leader is present on a subset of mRNAs from the human parasite Schistosoma mansoni Proc. Natl Acad. Sci. USA 87 1990 8879 8883
33. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
34. P. SanMiguel, A. Tikhonov, Y.K. Jin, N. Motchoulskaia, D. Zakharov, A. Melake-Berhan, P.S. Springer, K.J. Edwards, M. Lee, Z. Avramova, and J.L. Bennetzen Nested retrotransposons in the intergenic regions of the maize genome Science 274 1996 765 768
35. S. Scarlata, and C. Carter Role of HIV-1 Gag domains in viral assembly Biochim. Biophys. Acta 1614 2003 62 72
36. T. Sijen, and R.H. Plasterk Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi Nature 426 2003 310 314
37. Simpson, A.J., Dame, J.B., Lewis, F.A., McCutchan, T.F., 1984. The arrangement of ribosomal RNA genes in Schistosoma mansoni. Identification of Polymorphic structural variants. Eur. J. Biochem. 139, 41-45.
38. P.J. Skelly, A. Da'dara, and D.A. Harn Suppression of cathepsin B expression in Schistosoma mansoni by RNA interference Int. J. Parasitol. 33 2003 363 369
39. L.D. Spotila, H. Hirai, D.M. Rekosh, and P.T. LoVerde A retroposon-like short repetitive DNA element in the genome of the human blood fluke, Schistosoma mansoni Chromosoma 97 1989 421 428
40. M.S. Springer, and R.J. Britten Phylogenetic relationships of reverse transcriptase and RNaseH sequences and aspects of genome structure in the gypsy group of retrotransposons Mol. Biol. Evol. 10 1993 1370 1379
41. L.D. Stein, Z. Bao, D. Blasiar, T. Blumenthal, M.R. Brent, N. Chen, A. Chinwalla, L. Clarke, C. Clee, A. Coghlan, A. Coulson, P. D'Eustachio, D.H. Fitch, L.A. Fulton, R.E. Fulton, S. Griffiths-Jones, T.W. Harris, L.W. Hillier, R. Kamath, P.E. Kuwabara, E.R. Mardis, M.A. Marra, T.L. Miner, P. Minx, J.C. Mullikin, R.W. Plumb, J. Rogers, J.E. Schein, M. Sohrmann, J. Spieth, J.E. Stajich, C. Wei, D. Willey, R.K. Wilson, R. Durbin, and R.H. Waterston The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics PLoS Biol. 1 2003 E45
42. L. Teysset, J.C. Burns, H. Shike, B.L. Sullivan, A. Bucheton, and C. Terzian A Moloney murine leukemia virus-based retroviral vector pseudotyped by the insect retroviral gypsy envelope can infect Drosophila cells J. Virol. 72 1998 853 856
43. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
44. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
45. S. Verjovski-Almeida, R. DeMarco, E.A. Martins, P.E. Guimaraes, E.P. Ojopi, A.C. Paquola, J.P. Piazza, M.Y. Nishiyama Jr., J.P. Kitajima, R.E. Adamson, P.D. Ashton, M.F. Bonaldo, P.S. Coulson, G.P. Dillon, L.P. Farias, S.P. Gregorio, P.L. Ho, R.A. Leite, L.C. Malaquias, R.C. Marques, P.A. Miyasato, A.L. Nascimento, F.P. Ohlweiler, E.M. Reis, M.A. Ribeiro, R.G. Sa, G.C. Stukart, M.B. Soares, C. Gargioni, T. Kawano, V. Rodrigues, A.M. Madeira, R.A. Wilson, C.F. Menck, J.C. Setubal, L.C. Leite, and E. Dias-Neto Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni Nat. Genet. 35 2003 148 157
46. Y. Xiong, and T.H. Eickbush Origin and evolution of retroelements based upon their reverse transcriptase sequences EMBO J. 9 1990 3353 3362