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Volumn 6, Issue , 2005, Pages

Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni

Author keywords

[No Author keywords available]

Indexed keywords

ENDONUCLEASE; HELMINTH DNA;

EID: 27844455605     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-154     Document Type: Article
Times cited : (17)

References (47)
  • 2
    • 2342622869 scopus 로고    scopus 로고
    • Schistosome transcriptomes: New insights into the parasite and schistosomiasis
    • Hu W, Brindley PJ, McManus DP, Feng Z, Han ZG: Schistosome transcriptomes: new insights into the parasite and schistosomiasis. Trends Mol Med 2004, 10:217-225.
    • (2004) Trends Mol. Med. , vol.10 , pp. 217-225
    • Hu, W.1    Brindley, P.J.2    McManus, D.P.3    Feng, Z.4    Han, Z.G.5
  • 4
    • 0037314466 scopus 로고    scopus 로고
    • Mobile genetic elements colonizing the genomes of metazoan parasites
    • Brindley PJ, Laha T, McManus DP, Loukas A: Mobile genetic elements colonizing the genomes of metazoan parasites. Trends Parasitol 2003, 19:79-87.
    • (2003) Trends Parasitol. , vol.19 , pp. 79-87
    • Brindley, P.J.1    Laha, T.2    McManus, D.P.3    Loukas, A.4
  • 5
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth B, Sniegowski P, Stephan W: The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 1994, 371: 215-220.
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 6
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: Drivers of genome evolution
    • Kazazian Jr HH: Mobile elements: drivers of genome evolution. Science 2004, 303:1626-1632.
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian Jr., H.H.1
  • 7
    • 0033179759 scopus 로고    scopus 로고
    • Resident aliens: The Tc1/mariner superfamily of transposable elements
    • Plasterk RH, Izsvak Z, Ivics Z: Resident aliens: the Tc1/mariner superfamily of transposable elements. Trends Genet 1999, 15:326-332.
    • (1999) Trends Genet. , vol.15 , pp. 326-332
    • Plasterk, R.H.1    Izsvak, Z.2    Ivics, Z.3
  • 9
    • 3042790014 scopus 로고    scopus 로고
    • Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis
    • Fischer C, Bouneau L, Coutanceau JP, Weissenbach J, Volff JN, Ozouf-Costaz C: Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis. Gene 2004, 336: 175-183.
    • (2004) Gene , vol.336 , pp. 175-183
    • Fischer, C.1    Bouneau, L.2    Coutanceau, J.P.3    Weissenbach, J.4    Volff, J.N.5    Ozouf-Costaz, C.6
  • 10
    • 0036020261 scopus 로고    scopus 로고
    • Reverse transcriptase activity and untranslated region sharing of a new RTE-like, non-long terminal repeat retrotransposon from the human blood fluke, Schistosoma japonicum
    • Laha T, Brindley, PJ, Smout MJ, Verity CK, McManus DP, Loukas A: Reverse transcriptase activity and untranslated region sharing of a new RTE-like, non-long terminal repeat retrotransposon from the human blood fluke, Schistosoma japonicum. Int J Parasitol 2002, 32:1163-1174.
    • (2002) Int. J. Parasitol. , vol.32 , pp. 1163-1174
    • Laha, T.1    Brindley, P.J.2    Smout, M.J.3    Verity, C.K.4    McManus, D.P.5    Loukas, A.6
  • 11
    • 7944222696 scopus 로고    scopus 로고
    • The fugitive LTR retrotransposon from the genome of the human blood fluke, Schistosoma mansoni
    • Corrigendum, Int J Parasitol 2005 35: 461
    • Laha T, Loukas A, Smyth DJ, Copeland CS, Brindley PJ: The fugitive LTR retrotransposon from the genome of the human blood fluke, Schistosoma mansoni. Int. J Parasitol 2004, 34: 1365-1375. Corrigendum, Int J Parasitol 2005, 35: 461.
    • (2004) Int. J. Parasitol. , vol.34 , pp. 1365-1375
    • Laha, T.1    Loukas, A.2    Smyth, D.J.3    Copeland, C.S.4    Brindley, P.J.5
  • 13
    • 17544371085 scopus 로고    scopus 로고
    • The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements
    • Copeland CS, Mann VH, Morales ME, Kalinna BH, Brindley PJ: The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements. BMC Evol Biol 2005, 5:20.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 20
    • Copeland, C.S.1    Mann, V.H.2    Morales, M.E.3    Kalinna, B.H.4    Brindley, P.J.5
  • 17
    • 0031857142 scopus 로고    scopus 로고
    • The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs
    • Malik HS, Eickbush TH: The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs. Mol Biol Evol 1998, 15:1123-1134.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1123-1134
    • Malik, H.S.1    Eickbush, T.H.2
  • 18
    • 0032819618 scopus 로고    scopus 로고
    • SR2 elements, non-long terminal repeat retrotransposons of the RTE-1 lineage from the human blood fluke Schistosoma mansoni
    • Drew AC, Minchella DJ, King LT, Rollinson D, Brindley PJ: SR2 elements, non-long terminal repeat retrotransposons of the RTE-1 lineage from the human blood fluke Schistosoma mansoni. Mol Biol Evol 1999, 16:1256-1269.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1256-1269
    • Drew, A.C.1    Minchella, D.J.2    King, L.T.3    Rollinson, D.4    Brindley, P.J.5
  • 19
    • 0028919936 scopus 로고
    • Schistosoma mansoni: Cloning and characterization of a gene encoding cytosolic Cu/Zn superoxide dismutase
    • Mei H, Hirai H, Tanaka M, Hong Z, Rekosh D, LoVerde PT: Schistosoma mansoni: cloning and characterization of a gene encoding cytosolic Cu/Zn superoxide dismutase. Exp Parasitol 1995, 80:250-259.
    • (1995) Exp. Parasitol. , vol.80 , pp. 250-259
    • Mei, H.1    Hirai, H.2    Tanaka, M.3    Hong, Z.4    Rekosh, D.5    LoVerde, P.T.6
  • 20
    • 4143121384 scopus 로고    scopus 로고
    • Genomic organization of the Schistosoma mansoni aspartic protease gene, a platyhelminth orthologue of mammalian lysosomal cathepsin D
    • Morales ME, Kalinna BH, Heyers O, Schulmeister A, Mann VH, Copeland CS, Loukas A, Brindley PJ: Genomic organization of the Schistosoma mansoni aspartic protease gene, a platyhelminth orthologue of mammalian lysosomal cathepsin D. Gene 2004, 338: 99-109.
    • (2004) Gene , vol.338 , pp. 99-109
    • Morales, M.E.1    Kalinna, B.H.2    Heyers, O.3    Schulmeister, A.4    Mann, V.H.5    Copeland, C.S.6    Loukas, A.7    Brindley, P.J.8
  • 21
    • 0036829506 scopus 로고    scopus 로고
    • Adenylosuccinate lyase of Schistosoma mansoni: Gene structure, mRNA expression, and analysis of the predicted peptide structure of a potential chemotherapeutic target
    • Foulk BW, Pappas G, Hirai Y, Hirai H, Williams DL: Adenylosuccinate lyase of Schistosoma mansoni: gene structure, mRNA expression, and analysis of the predicted peptide structure of a potential chemotherapeutic target. Int J Parasitol 2002, 32:1487-1495.
    • (2002) Int. J. Parasitol. , vol.32 , pp. 1487-1495
    • Foulk, B.W.1    Pappas, G.2    Hirai, Y.3    Hirai, H.4    Williams, D.L.5
  • 22
    • 0030995360 scopus 로고    scopus 로고
    • A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates
    • Drew AC, Brindley PJ: A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates. Mol Biol Evol 1997, 14:602-610.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 602-610
    • Drew, A.C.1    Brindley, P.J.2
  • 23
    • 2442671716 scopus 로고    scopus 로고
    • A highly active synthetic mammalian retrotransposon
    • Han JS, Boeke JD: A highly active synthetic mammalian retrotransposon. Nature 2004, 429: 314-318.
    • (2004) Nature , vol.429 , pp. 314-318
    • Han, J.S.1    Boeke, J.D.2
  • 24
    • 0037028484 scopus 로고    scopus 로고
    • pido, a non-long terminal repeat retrotransposon of the chicken repeat 1 family from the genome of the Oriental blood fluke, Schistosoma japonicum
    • Laha T, Brindley PJ, Verity CK, McManus DP, Loukas A: pido, a non-long terminal repeat retrotransposon of the chicken repeat 1 family from the genome of the Oriental blood fluke, Schistosoma japonicum. Gene 2002, 284:149-159.
    • (2002) Gene , vol.284 , pp. 149-159
    • Laha, T.1    Brindley, P.J.2    Verity, C.K.3    McManus, D.P.4    Loukas, A.5
  • 25
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • Malik HS, Burke WD, Eickbush TH: The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol 1999, 16:793-805.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 793-805
    • Malik, H.S.1    Burke, W.D.2    Eickbush, T.H.3
  • 26
    • 0033966338 scopus 로고    scopus 로고
    • NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans
    • Malik HS, Eickbush TH: NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans. Genetics 2000, 154:193-203.
    • (2000) Genetics , vol.154 , pp. 193-203
    • Malik, H.S.1    Eickbush, T.H.2
  • 27
    • 0030052098 scopus 로고    scopus 로고
    • Rte-1, a retrotransposon-like element in Caenorhabditis elegans
    • Youngman S, van Luenen HG, Plasterk RH: Rte-1, a retrotransposon-like element in Caenorhabditis elegans. FEBS Lett 1996, 380:1-7.
    • (1996) FEBS Lett. , vol.380 , pp. 1-7
    • Youngman, S.1    van Luenen, H.G.2    Plasterk, R.H.3
  • 28
    • 0141425540 scopus 로고    scopus 로고
    • Mapping and sequencing of acetylcholinesterase genes from the platyhelminth blood fluke Schistosoma
    • Bentley GN, Jones AK, Agnew A: Mapping and sequencing of acetylcholinesterase genes from the platyhelminth blood fluke Schistosoma. Gene 2003, 314:103-112.
    • (2003) Gene , vol.314 , pp. 103-112
    • Bentley, G.N.1    Jones, A.K.2    Agnew, A.3
  • 31
    • 0031055331 scopus 로고    scopus 로고
    • Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons
    • Jurka J: Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. Proc Natl Acad Sci USA 1997, 94:1872-1827.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 1827-1872
    • Jurka, J.1
  • 33
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng Q, Moran JV, Kazazian HH Jr, Boeke JD: Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 1996, 87:905-916.
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian Jr., H.H.3    Boeke, J.D.4
  • 34
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan DD, Korman MH, Jakubczak JL, Eickbush TH: Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 1993, 72:595-605.
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 38
    • 0344826526 scopus 로고    scopus 로고
    • RNA truncation by premature polyadenylation attenuates human mobile element activity
    • Perepelitsa-Belancio V, Deininger P: RNA truncation by premature polyadenylation attenuates human mobile element activity. Nat Genet 2003, 35:363-366.
    • (2003) Nat. Genet. , vol.35 , pp. 363-366
    • Perepelitsa-Belancio, V.1    Deininger, P.2
  • 40
    • 27844579540 scopus 로고    scopus 로고
    • The Sanger Institute: S. mansoni blast server
    • The Sanger Institute: S. mansoni blast server: [http://www.sanger.ac.uk/cgibin/blast/submitblast/s_mansoni].
  • 41
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern EM: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 1975, 98: 503-517.
    • (1975) J. Mol. Biol. , vol.98 , pp. 503-517
    • Southern, E.M.1
  • 42
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG: The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 43
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T: BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999, 41:95-98.
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.1
  • 44
    • 0003437299 scopus 로고
    • PHYLIP (Phylogeny Inference Package) version 3.5c
    • Distributed by the author. Department of Genetics, University of Washington, Seattle
    • Felsenstein J: PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle; 1993.
    • (1993)
    • Felsenstein, J.1
  • 45
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page RD: TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996, 12:357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 46
    • 0029162102 scopus 로고
    • Molecular phylogenetics of the four Schistosoma species groups determined with partial 28S ribosomal RNA gene sequences
    • Littlewood DT, Johnston DA: Molecular phylogenetics of the four Schistosoma species groups determined with partial 28S ribosomal RNA gene sequences. Parasitology 1995, 111:167-175.
    • (1995) Parasitology , vol.111 , pp. 167-175
    • Littlewood, D.T.1    Johnston, D.A.2
  • 47
    • 84871394047 scopus 로고    scopus 로고
    • The statistics of sequence similarity scores
    • The statistics of sequence similarity scores: [http://www.ncbi.nlm.nih.gov/BLAST/tutorial/Altschul-1.html#head2].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.