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Volumn 151, Issue 6, 2006, Pages 1117-1132

Molecular phylogeny of VP1, 2A, and 2B genes of echovirus isolates: Epidemiological linkage and observations on genetic variation

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; VIRUS PROTEIN; VIRUS RNA;

EID: 33744465232     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-005-0697-4     Document Type: Article
Times cited : (12)

References (44)
  • 1
    • 0030023906 scopus 로고    scopus 로고
    • Identification of Enteroviruses in clinical specimens by competitive PCR followed by genetic typing using sequence analysis
    • A Arola J Santti O Ruuskanen P Halonen T Hyypiä 1996 Identification of Enteroviruses in clinical specimens by competitive PCR followed by genetic typing using sequence analysis J Clin Microbiol 34 313 318
    • (1996) J Clin Microbiol , vol.34 , pp. 313-318
    • Arola, A.1    Santti, J.2    Ruuskanen, O.3    Halonen, P.4    Hyypiä, T.5
  • 2
    • 0036883679 scopus 로고    scopus 로고
    • Genetic diversity of echovirus 30 during a meningitis outbreak, demonstrated by direct molecular typing from cerebrospinal fluid
    • JL Bailly D Brosson C Archimbaud M Chambo C Henquell H Peigue-Lafeuille 2002 Genetic diversity of echovirus 30 during a meningitis outbreak, demonstrated by direct molecular typing from cerebrospinal fluid J Med Virol 68 558 567
    • (2002) J Med Virol , vol.68 , pp. 558-567
    • Bailly, J.L.1    Brosson, D.2    Archimbaud, C.3    Chambo, M.4    Henquell, C.5    Peigue-Lafeuille, H.6
  • 4
    • 0035174214 scopus 로고    scopus 로고
    • Molecular strategy for 'serotyping' of human enteroviruses
    • V Caro S Guillot F Delpeyroux R Crainic 2001 Molecular strategy for 'serotyping' of human enteroviruses J Gen Virol 82 79 91
    • (2001) J Gen Virol , vol.82 , pp. 79-91
    • Caro, V.1    Guillot, S.2    Delpeyroux, F.3    Crainic, R.4
  • 5
    • 0029014339 scopus 로고
    • New method for the extraction of viral RNA and DNA from cerebrospinal fluid for use in the polymerase chain reaction assay
    • I Casas L Powell PE Klapper GM Cleator 1995 New method for the extraction of viral RNA and DNA from cerebrospinal fluid for use in the polymerase chain reaction assay J Virol Methods 53 25 36
    • (1995) J Virol Methods , vol.53 , pp. 25-36
    • Casas, I.1    Powell, L.2    Klapper, P.E.3    Cleator, G.M.4
  • 6
    • 0037159504 scopus 로고    scopus 로고
    • Enterovirus surveillance - United States, 2000-2001
    • Centers for Disease Control and Prevention
    • Centers for Disease Control and Prevention 2002 Enterovirus surveillance - United States, 2000-2001 Morb Mortal Wkly Rep 51 1047 1049
    • (2002) Morb Mortal Wkly Rep , vol.51 , pp. 1047-1049
  • 7
    • 12444279065 scopus 로고    scopus 로고
    • Three echovirus serotypes responsible for outbreak of aseptic meningitis in Rhone-Alpes region, France
    • JJ Chomel D Antona D Thouvenot B Lina 2003 Three echovirus serotypes responsible for outbreak of aseptic meningitis in Rhone-Alpes region, France Eur J Clin Microbiol Infect Dis 22 191 193
    • (2003) Eur J Clin Microbiol Infect Dis , vol.22 , pp. 191-193
    • Chomel, J.J.1    Antona, D.2    Thouvenot, D.3    Lina, B.4
  • 8
    • 0028607605 scopus 로고
    • Molecular epidemiology of enterovirus outbreaks in Canada during 1991-1992: Identification of echovirus 30 and coxsackievirus B1 strains by amplicon sequencing
    • MA Drebot CY Nguan JJ Campbell SHS Lee KR Forward 1994 Molecular epidemiology of enterovirus outbreaks in Canada during 1991-1992: identification of echovirus 30 and coxsackievirus B1 strains by amplicon sequencing J Med Virol 44 340 347
    • (1994) J Med Virol , vol.44 , pp. 340-347
    • Drebot, M.A.1    Nguan, C.Y.2    Campbell, J.J.3    Lee, S.H.S.4    Forward, K.R.5
  • 10
    • 3242690303 scopus 로고
    • Covalent linkage of a protein to a defined nucleotide sequence at the 5-terminus of virion and replicative intermediate RNAs genome replication
    • JB Flanegan RF Petterson V Ambros NJ Hewlett D Baltimore 1977 Covalent linkage of a protein to a defined nucleotide sequence at the 5-terminus of virion and replicative intermediate RNAs genome replication J Virol 69 7835 7844
    • (1977) J Virol , vol.69 , pp. 7835-7844
    • Flanegan, J.B.1    Petterson, R.F.2    Ambros, V.3    Hewlett, N.J.4    Baltimore, D.5
  • 11
    • 0031014049 scopus 로고    scopus 로고
    • Classification of enteroviruses based on molecular and biological properties
    • T Hyypiä T Hovi NJ Knowles G Stanway 1997 Classification of enteroviruses based on molecular and biological properties J Gen Virol 78 1 11
    • (1997) J Gen Virol , vol.78 , pp. 1-11
    • Hyypiä, T.1    Hovi, T.2    Knowles, N.J.3    Stanway, G.4
  • 12
    • 0002884858 scopus 로고    scopus 로고
    • Picornaviridae
    • Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds) Seventh report of the International Committee on Taxonomy of Viruses. Academic Press, New York, San Diego
    • King AMQ, Brow F, Christian P, Hovi T, Hyypiä T, Knowles NJ, Lemon SM, Minor PD, Palmenberg AC, Skern T, Stanway G (2000) Picornaviridae. In: Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds) Virus taxonomy. Seventh report of the International Committee on Taxonomy of Viruses. Academic Press, New York, San Diego, pp 657-673
    • (2000) Virus Taxonomy , pp. 657-673
    • King, A.M.Q.1    Brow, F.2    Christian, P.3    Hovi, T.4    Hyypiä, T.5    Knowles, N.J.6    Lemon, S.M.7    Minor, P.D.8    Palmenberg, A.C.9    Skern, T.10    Stanway, G.11
  • 14
    • 0028820317 scopus 로고
    • Genotypic variation in coxsackievirus B5 isolates from three different outbreaks in the United States
    • H Kopecka B Brown M Pallansch 1995 Genotypic variation in coxsackievirus B5 isolates from three different outbreaks in the United States Virus Res 38 125 136
    • (1995) Virus Res , vol.38 , pp. 125-136
    • Kopecka, H.1    Brown, B.2    Pallansch, M.3
  • 15
    • 3242678001 scopus 로고    scopus 로고
    • Amplification of Echoviruses genomic regions by different RT-PCR protocols - A comparative study
    • C Kottaridi E Bolanaki P Markoulatos 2004 Amplification of Echoviruses genomic regions by different RT-PCR protocols - a comparative study Mol Cell Probes 18 263 269
    • (2004) Mol Cell Probes , vol.18 , pp. 263-269
    • Kottaridi, C.1    Bolanaki, E.2    Markoulatos, P.3
  • 16
    • 26444522645 scopus 로고    scopus 로고
    • Evaluation of seroneutralization and molecular diagnostic methods for Echovirus identification
    • C Kottaridi E Bolanaki P Markoulatos 2005 Evaluation of seroneutralization and molecular diagnostic methods for Echovirus identification Diagn Microbiol Infect Dis 53 113 119
    • (2005) Diagn Microbiol Infect Dis , vol.53 , pp. 113-119
    • Kottaridi, C.1    Bolanaki, E.2    Markoulatos, P.3
  • 21
    • 0000126962 scopus 로고    scopus 로고
    • Enteroviruses: Polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses
    • Lippincott-Raven Philadelphia
    • JL Melnick 1996 Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses BN Fields DM Knipe PM Howley Fields virology Lippincott-Raven Philadelphia 655 712
    • (1996) Fields Virology , pp. 655-712
    • Melnick, J.L.1    Fields, B.N.2    Knipe, D.M.3    Howley, P.M.4
  • 22
    • 0025328645 scopus 로고
    • Antigenic structure of Picornaviruses
    • PD Minor 1990 Antigenic structure of Picornaviruses Curr Top Microbiol Immunol 161 121 154
    • (1990) Curr Top Microbiol Immunol , vol.161 , pp. 121-154
    • Minor, P.D.1
  • 23
    • 0035216668 scopus 로고    scopus 로고
    • Homotypic Echoviruses share aminoterminal VP1 sequence homology applicable for typing
    • H Norder L Bjerregaard LO Magnius 2001 Homotypic Echoviruses share aminoterminal VP1 sequence homology applicable for typing J Med Virol 63 35 44
    • (2001) J Med Virol , vol.63 , pp. 35-44
    • Norder, H.1    Bjerregaard, L.2    Magnius, L.O.3
  • 25
    • 0033020133 scopus 로고    scopus 로고
    • Molecular evolution of the human enteroviruses: Correlation of serotype with VP1 sequence and application to picornavirus classification
    • MS Oberste K Maher DR Kilpatrick MA Pallansch 1999b Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification J Virol 73 1941 1948
    • (1999) J Virol , vol.73 , pp. 1941-1948
    • Oberste, M.S.1    Maher, K.2    Kilpatrick, D.R.3    Pallansch, M.A.4
  • 26
    • 0035143933 scopus 로고    scopus 로고
    • Molecular identification of new picornaviruses and characterization of a proposed enterovirus 73 serotype
    • MS Oberste D Schnurr K Maher S al-Busaidy MA Pallansch 2001 Molecular identification of new picornaviruses and characterization of a proposed enterovirus 73 serotype J Gen Virol 82 409 416
    • (2001) J Gen Virol , vol.82 , pp. 409-416
    • Oberste, M.S.1    Schnurr, D.2    Maher, K.3    Al-Busaidy, S.4    Pallansch, M.A.5
  • 27
    • 0037375092 scopus 로고    scopus 로고
    • Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing
    • MS Oberste WA Nix K Maher MA Pallansch 2003 Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing J Clin Virol 26 375 377
    • (2003) J Clin Virol , vol.26 , pp. 375-377
    • Oberste, M.S.1    Nix, W.A.2    Maher, K.3    Pallansch, M.A.4
  • 28
    • 0346688632 scopus 로고    scopus 로고
    • Evidence for frequent recombination within species Human Enterovirus B based on complete genomic sequences of all thirty-seven serotypes
    • MS Oberste K Maher MA Pallansch 2004a Evidence for frequent recombination within species Human Enterovirus B based on complete genomic sequences of all thirty-seven serotypes J Virol 78 855 867
    • (2004) J Virol , vol.78 , pp. 855-867
    • Oberste, M.S.1    Maher, K.2    Pallansch, M.A.3
  • 29
    • 1542287492 scopus 로고    scopus 로고
    • RNA recombination plays a major role in genomic change during circulation of Coxsackie B viruses
    • MS Oberste S Penãranda MA Pallansch 2004b RNA recombination plays a major role in genomic change during circulation of Coxsackie B viruses J Virol 78 2948 2955
    • (2004) J Virol , vol.78 , pp. 2948-2955
    • Oberste, M.S.1    Penãranda, S.2    Pallansch, M.A.3
  • 31
    • 0036237110 scopus 로고    scopus 로고
    • Molecular epidemiology of echovirus 30: Temporal circulation and prevalence of single lineages
    • G Palacios I Casas D Cisterna G Trallero A Tenorio C Freire 2002 Molecular epidemiology of echovirus 30: temporal circulation and prevalence of single lineages J Virol 76 4940 4949
    • (2002) J Virol , vol.76 , pp. 4940-4949
    • Palacios, G.1    Casas, I.2    Cisterna, D.3    Trallero, G.4    Tenorio, A.5    Freire, C.6
  • 32
    • 0025011840 scopus 로고
    • Proteolytic processing of picornaviral polyprotein
    • AC Palmenberg 1990 Proteolytic processing of picornaviral polyprotein Annu Rev Microbiol 44 603 623
    • (1990) Annu Rev Microbiol , vol.44 , pp. 603-623
    • Palmenberg, A.C.1
  • 33
    • 0025784102 scopus 로고
    • Mapping of a neutralizing antigenic site of Coxsackievirus B4 by construction of an antigenic chimera
    • BY Reimann R Zell R Kandolf 1991 Mapping of a neutralizing antigenic site of Coxsackievirus B4 by construction of an antigenic chimera J Virol 65 3475 3480
    • (1991) J Virol , vol.65 , pp. 3475-3480
    • Reimann, B.Y.1    Zell, R.2    Kandolf, R.3
  • 34
    • 0021269982 scopus 로고
    • Systematic nomenclature of picornavirus proteins
    • RR Rueckert E Wimmer 1984 Systematic nomenclature of picornavirus proteins J Virol 50 957 959
    • (1984) J Virol , vol.50 , pp. 957-959
    • Rueckert, R.R.1    Wimmer, E.2
  • 36
    • 0035096019 scopus 로고    scopus 로고
    • Molecular epidemiology of echovirus 30 in Europe: Succession of dominant sublineages within a single major genotype
    • C Savolainen T Hovi MN Mulders 2001 Molecular epidemiology of echovirus 30 in Europe: succession of dominant sublineages within a single major genotype Arch Virol 146 521 537
    • (2001) Arch Virol , vol.146 , pp. 521-537
    • Savolainen, C.1    Hovi, T.2    Mulders, M.N.3
  • 37
    • 0035073657 scopus 로고    scopus 로고
    • Molecular detection and identification of an enterovirus during an outbreak of aseptic meningitis
    • N Siafakas A Georgopoulou P Markoulatos N Spyrou G Stanway 2001 Molecular detection and identification of an enterovirus during an outbreak of aseptic meningitis J Clin Lab Anal 15 87 95
    • (2001) J Clin Lab Anal , vol.15 , pp. 87-95
    • Siafakas, N.1    Georgopoulou, A.2    Markoulatos, P.3    Spyrou, N.4    Stanway, G.5
  • 38
    • 0036893295 scopus 로고    scopus 로고
    • Molecular classification of coxsackie a viruses on the basis of the 5′-UTR: Structural and evolutionary aspects
    • N Siafakas P Markoulatos G Stanway 2002 Molecular classification of coxsackie A viruses on the basis of the 5′-UTR: structural and evolutionary aspects J Mol Evol 55 638 652
    • (2002) J Mol Evol , vol.55 , pp. 638-652
    • Siafakas, N.1    Markoulatos, P.2    Stanway, G.3
  • 39
    • 0037863854 scopus 로고    scopus 로고
    • Molecular sub-grouping of enterovirus reference and wild type strains into distinct genetic clusters using a simple RFLP assay
    • N Siafakas P Markoulatos C Vlachos G Stanway G Tzanakaki J Kourea-Kremastinou 2003 Molecular sub-grouping of enterovirus reference and wild type strains into distinct genetic clusters using a simple RFLP assay Mol Cell Probes 17 113 123
    • (2003) Mol Cell Probes , vol.17 , pp. 113-123
    • Siafakas, N.1    Markoulatos, P.2    Vlachos, C.3    Stanway, G.4    Tzanakaki, G.5    Kourea-Kremastinou, J.6
  • 40
    • 0038024094 scopus 로고    scopus 로고
    • Molecular typing and epidemiology of enteroviruses identified from an outbreak of aseptic meningitis in Belgium during the summer of 2000
    • I Thoelen P Lemey I Van der Donck K Beuselinck AM Lindberg M Van Ranst 2003 Molecular typing and epidemiology of enteroviruses identified from an outbreak of aseptic meningitis in Belgium during the summer of 2000 J Med Virol 70 420 429
    • (2003) J Med Virol , vol.70 , pp. 420-429
    • Thoelen, I.1    Lemey, P.2    Van Der Donck, I.3    Beuselinck, K.4    Lindberg, A.M.5    Van Ranst, M.6
  • 41
    • 12144291283 scopus 로고    scopus 로고
    • Analysis of the serotype and genotype correlation of VP1 and the 5′ noncoding region in an epidemiological survey of the human Enterovirus B species
    • I Thoelen E Moës P Lemey S Mostmans E Wollants AM Lindberg A Vandamme M Van Ranst 2004 Analysis of the serotype and genotype correlation of VP1 and the 5′ noncoding region in an epidemiological survey of the human Enterovirus B species J Clin Microbiol 42 963 971
    • (2004) J Clin Microbiol , vol.42 , pp. 963-971
    • Thoelen, I.1    Moës, E.2    Lemey, P.3    Mostmans, S.4    Wollants, E.5    Lindberg, A.M.6    Vandamme, A.7    Van Ranst, M.8
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • JD Thompson DG Higgins TJ Gibsonm 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibsonm, T.J.3
  • 44
    • 33744477439 scopus 로고    scopus 로고
    • World Health Organization (1996) Polio Lab Network 2 (1)
    • World Health Organization (1996) Polio Lab Network 2 (1)


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