Evidence of recombination among enteroviruses

Journal of Virology

Volumn 73, Issue 10, 1999, Pages 8741-8749

  Santti, Juhana ^a,c   Hyypiä, Timo ^a   Kinnunen, Leena ^b   Salminen, Mika ^b  

^a UNIVERSITY OF TURKU   (Finland)

^b NATIONAL PUBLIC HEALTH INSTITUTE   (Finland)

^c UNIVERSITY OF TURKU   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; ENTEROVIRUS; GENE CLUSTER; GENETIC ANALYSIS; GENETIC VARIABILITY; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; VIRUS CAPSID; VIRUS RECOMBINATION;

EID: 0032849327     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.73.10.8741-8749.1999     Document Type: Article

References (44)

1. Abraham, G., and R. J. Colonno. 1984. Many rhinovirus serotypes share the same cellular receptor. J. Virol. 51:340-345.
2. Cammack, N., A. Phillips, G. Dunn, V. Patel, and P. D. Minor. 1988. Intertypic genomic rearrangements of poliovirus strains in vaccinees. Virology 167:507-514.
3. Carr, J. K., M. O. Salminen, J. Albert, E. Sanders-Buell, D. Gotte, D. L. Birx, and F. E. McCutchan. 1998. Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants. Virology 247:22-31.
4. Drake, J. W. 1993. Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. USA 90:4171-4175.
5. Evans, D. J., and J. W. Almond. 1998. Cell receptors for picornaviruses as determinants of cell tropism and pathogenesis. Trends Microbiol. 6:198-202.
6. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
7. Felsenstein, J. 1996. PHYLIP: phylogeny inference package, version 3.572c. University of Washington, Seattle.
8. Furione, M., S. Guillot, D. Otelea, J. Balanant, A. Candrea, and R. Crainic. 1993. Polioviruses with natural recombinant genomes isolated from vaccine-associated paralytic poliomyelitis. Virology 196:199-208.
9. Gao, F., D. L. Robertson, S. G. Morrison, H. Hui, S. Craig, J. Decker, P. N. Fultz, M. Girard, G. M. Shaw, B. H. Hahn, and P. M. Sharp. 1996. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin. J. Virol. 70:7013-7029.
10. Holland, J., and E. Domingo. 1998. Origin and evolution of viruses. Virus Genes 16:13-21.
11. Horsnell, C., R. E. Gama, P. J. Hughes, and G. Stanway. 1995. Molecular relationships between 21 human rhinovirus serotypes. J. Gen. Virol. 76: 2549-2555.
12. Huttunen, P., J. Santti, T. Pulli, and T. Hyypiä. 1996. The major echovirus group is genetically coherent and related to coxsackie B viruses. J. Gen. Virol. 77:715-725.
13. Hyypiä, T., T. Hovi, N. J. Knowles, and G. Stanway. 1997. Classification of enteroviruses based on molecular and biological properties. J. Gen. Virol. 78:1-11.
14. Jarvis, T. C., and K. Kirkegaard. 1992. Poliovirus RNA recombination: mechanistic studies in the absence of selection. EMBO J. 11:3135-3145.
15. Johnson, V. H., and B. L. Semler. 1988. Defined recombinants of poliovirus and coxsackievirus: sequence-specific deletions and functional substitutions in the 5′-noncoding regions of viral RNAs. Virology 162:47-57.
16. Kendal, A. P. 1987. Epidemiologic implications of changes in the influenza virus genome. Am. J. Med. 82:4-14.
17. King, A. M. Q. 1988. Recombination in positive strand RNA viruses, p. 149-165. In E. Domingo, J. J. Holland, and P. Ahlquist (ed.), RNA genetics, vol 2. CRC, Boca Raton, Fla.
18. King, A. M. Q., F. Brown, P. Christian, T. Hovi, T. Hyypiä, N. J. Knowles, S. M. Lemon, P. D. Minor, A. C. Palmenberg, T. Skern, and G. Stanway. 1999. Picornaviridae, p. 996. In M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carsten, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle and R. B. Wickner (ed.), Virus taxonomy. Seventh report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, Calif.
19. Kirkegaard, K., and D. Baltimore. 1986. The mechanism of RNA recombination in poliovirus. Cell 47:433-443.
20. Klump, W. M., I. Bergmann, B. C. Müller, D. Ameis, and R. Kandolf. 1990. Complete nucleotide sequence of infectious coxsackievirus B3 cDNA: two initial 5′ uridine residues are regained during plus-strand RNA synthesis. J. Virol. 64:1573-1583.
21. Knowlton, K. U., E.-S. Jeon, N. Berkley, R. Wessely, and S. Huber. 1996. A mutation in the puff region of VP2 attenuates the myocarditic phenotype of an infectious cDNA of the Woodruff variant of coxsackievirus B3. J. Virol. 70:7811-7818.
22. Lindberg, A. M., P. O. K. Stalhandske, and U. Pettersson. 1987. Genome of coxsackievirus B3. Virology 156:50-63.
23. Lole, K. S., R. C. Bollinger, R. S. Paranjape, D. Gadkari, S. S. Kulkarni, N. G. Novak, R. Ingersoll, H. W. Sheppard, and S. C. Ray. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73:152-160.
24. pro proteins: separation of proteinase from translation and replication functions. J. Virol. 69:7445-7452.
25. McCutchan, F. E., M. O. Salminen, J. K. Carr, and D. S. Burke. 1996. HIV-1 genetic diversity. AIDS 10:S13-S20.
26. Mendelsohn, C. L., E. Wimmer, and V. R Racaniello. 1989. Cellular receptor for poliovirus: molecular cloning, nucleotide sequence, and expression of a new member of the immunoglobulin superfamily. Cell 56:855-865.
27. Oberste, M. S., K. Maher, and M. A. Pallansch. 1998. Molecular phylogeny of all human enterovirus serotypes based on comparison of sequences at the 5′ end of the region encoding VP2. Virus Res. 58:35-43.
28. Pöyry, T., T. Hyypiä, C. Horsnell, L. Kinnunen, T. Hovi, and G. Stanway. 1994. Molecular analysis of coxsackievirus A16 reveals a new genetic group of enteroviruses. Virology 202:982-987.
29. Pöyry, T., L. Kinnunen, T. Hyypiä, B. Brown, C. Horsnell, T. Hovi, and G. Stanway. 1996. Genetic and phylogenetic clustering of enteroviruses. J. Gen. Virol. 77:1699-1717.
30. Pulli, T., P. Koskimies, and T. Hyypiä. 1995. Molecular comparison of coxsackie A virus serotypes. Virology 212:30-38.
31. Ray, S. C. 1997. SimPlot for Windows 95/NT, version 1.2.2. [Online.] Baltimore, Md. (Distributed by author.) http://www.welch.jhu.edu/̃sray/download.
32. Robertson, D. L., P. M. Sharp, F. E. McCutchan, and B. H. Hahn. 1995. Recombination in HIV-1. Nature 374:124-126.
33. Rohll, J. B., D. H. Moon, D. J. Evans, and J. W. Almond. 1995. The 3′ untranslated region of picornavirus RNA: features required for efficient genome replication. J. Virol. 69:7835-7844.
34. Rohll, J. B., N. Percy, R. Ley, D. J. Evans, J. W. Almond, and W. S. Barclay. 1994. The 5′-untranslated regions of picornavirus RNAs contain independent functional domains essential for RNA replication and translation. J. Virol. 68:4384-4391.
35. Salminen, M. O., J. K. Carr, D. S. Burke, and F. E. McCutchan. 1995. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res. Hum. Retroviruses 11:1423-1425.
36. Salminen, M. O., J. K. Carr, D. L Robertson, P. Hegerich, D. Gotte, C. Koch, E. Sanders-Buell, F. Gao, P. M. Sharp, B. H. Hahn, D. S. Burke, and F. E. McCutchan. 1997. Evolution and probable transmission of intersubtype recombinant human immunodeficiency virus type 1 in a Zambian couple. J. Virol. 71:2647-2655.
37. Salminen, M. O., and W. Cobb. 11 September 1998, revision date. [Online.] Bootscanning package for Unix/Linux, version 1. National Public Health Institute, Helsinki, Finland, http://www.ktl.fi/hiv.
38. Semler, B. L., V. H. Johnson, and S. Tracy. 1986. A chimeric plasmid from cDNA clones of poliovirus and coxsackievirus produces a recombinant virus that is temperature-sensitive. Proc. Natl. Acad. Sci. USA 83:1777-1781.
39. Shiroki, K., T. Ishii, T. Aoki, Y. Ota, W. X. Yang, T. Komatsu, Y. Ami, M. Arita, S. Abe, S. Hashizume, and A. Nomoto. 1997. Host range phenotype induced by mutations in the internal ribosomal entry site of poliovirus RNA. J. Virol. 71:1-8.
40. Sibold, C., H. Meisel, D. H. Krüger, M. Labuda, J. Lysy, O. Kozuch, M. Pejcoch, A. Vaheri, and A. Pluysnin. 1999. Recombination in Tula hantavirus evolution: analysis of genetic lineages from Slovakia. J. Virol. 73:667-675.
41. Smith, S. W., R. Overbeek, C. R. Woese, W. Gilbert, and P. M. Gillevet. 1994. The Genetic Data Environment: an expandable GUI for multiple sequence analysis. Comput. Appl. Biosci. 10:671-675.
42. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
43. van Kuppeveld, F. J., P. J. van den Hurk, W. van der Vliet, J. M. Galama, and W. J. Melchers. 1997. Chimeric coxsackie B3 virus genomes that express hybrid coxsackievirus-poliovirus 2B proteins: functional dissection of structural domains involved in RNA replication. J. Gen. Virol. 78:1833-1840.
44. Zhang, G., G. Wilsden, N. J. Knowles, and J. W. McCauley. 1993. Complete nucleotide sequence of a coxsackie B5 virus and its relationship to swine vesicular disease virus. J. Gen. Virol. 74:845-853.