Evaluation of seroneutralization and molecular diagnostic methods for echovirus identification

Diagnostic Microbiology and Infectious Disease

Volumn 53, Issue 2, 2005, Pages 113-119

  Kottaridi, Christine ^a   Bolanaki, Eugenia ^b,c   Siafakas, Nikolaos ^a   Markoulatos, Panayotis ^a  

^a UNIVERSITY OF THESSALY   (Greece)

^b HELLENIC PASTEUR INSTITUTE   (Greece)

^c UNIVERSITY OF ATHENS   (Greece)

Author keywords

5 UTR RFLP; Echoviruses; RT PCR; Seroneutralization; VP1 gene sequencing

Indexed keywords

ARTICLE; COMPARATIVE STUDY; CORRELATION ANALYSIS; DIAGNOSTIC PROCEDURE; ECHO VIRUS; GENE AMPLIFICATION; GENE CLUSTER; GENE LOCATION; GENE SEQUENCE; GENETIC CODE; GENOMIC FRAGMENT; GENOTYPE; MOLECULAR TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RESTRICTION MAPPING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEROTYPE; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS NEUTRALIZATION;

5' UNTRANSLATED REGIONS; CAPSID PROTEINS; DNA PRIMERS; ENTEROVIRUS B, HUMAN; ENTEROVIRUS INFECTIONS; EPIDEMIOLOGY, MOLECULAR; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEROTYPING; TUMOR CELLS, CULTURED;

EID: 26444522645     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2005.06.016     Document Type: Article

References (42)

1. M.J. Abzug Presentation, diagnosis, and management of enterovirus infections in neonates Paediatr. Drugs 6 2004 1 10
2. A. Arola, J. Santti, O. Ruuskanen, P. Halonen, and T. Hyypiä Identification of enteroviruses in clinical specimens by competitive PCR followed by genetic typing using sequence analysis J. Clin. Microbiol. 34 1996 313 318
3. J.L. Bailly, D. Brosson, C. Archimbaud, M. Chambo, C. Henquell, and H. Peigue-Lafeuille Genetic diversity of echovirus 30 during a meningitis outbreak, demonstrated by direct molecular typing from cerebrospinal fluid J. Med. Virol. 68 2002 558 567
4. E. Bernit, X. de Lamballerie, C. Zandotti, P. Berger, V. Veit, N. Schleinitz, P. de Micco, J.R. Harle, and R.N. Charrel Prospective investigation of a large outbreak of meningitis due to echovirus 30 during summer 2000 in Marseilles, France Medicine (Baltimore) 83 2004 245 253
5. A. Böttner, S. Daneschnejad, W. Handrick, V. Schuster, U.G. Liebert, and W. Kiess A season of aseptic meningitis in Germany: Epidemiologic, clinical and diagnostic aspects Pediatr. Infect. Dis. J. 21 2002 1126 1132
6. I. Casas, L. Powell, P.E. Klapper, and G.M. Cleator New method for the extraction of viral RNA and DNA from cerebrospinal fluid for use in the polymerase chain reaction assay J. Virol. Methods 53 1995 25 36
7. V. Caro, S. Guillot, F. Delpeyroux, and R. Crainic Molecular strategy for 'serotyping' of human enteroviruses J. Gen. Virol. 82 2001 79 91
8. Centers for Disease Control and Prevention Enterovirus surveillance-United States, 2000-2001 Morb. Mortal. Wkly. Rep 51 2002 1047 1049
9. J.J. Chomel, D. Antona, D. Thouvenot, and B. Lina Three echovirus serotypes responsible for outbreak of aseptic meningitis in Rhone-Alpes region, France Eur. J. Clin. Microbiol. Infect. Dis. 22 2003 191 193
10. M.A. Drebot, C.Y. Nguan, J.J. Campbell, S.H.S. Lee, and K.R. Forward Molecular epidemiology of enterovirus outbreaks in Canada during 1991-1992: Identification of echovirus 30 and coxsackievirus B1 strains by amplicon sequencing J. Med. Virol. 44 1994 340 347
11. J. Felsenstein PHYLIP: Phylogeny inference package 3.5c ed. 1993 University of Washington Seattle
12. A. Georgopoulou, P. Markoulatos, N. Spyrou, and N.C. Vamvakopoulos Improved genotyping vaccine and wild-type poliovirus strains by restriction fragment length polymorphism analysis: Clinical diagnostic implications J. Clin. Microbiol. 38 2000 4337 4342
13. A. Georgopoulou, P. Markoulatos, N. Spyrou, N. Vakalis, and N. Vamvakopoulos High sequence divergence in the 5′ non coding region of reference coxsackie B and echo viral strains and clinical isolates revealed by restriction fragment length polymorphism analysis Mol. Cell. Probes 15 2001 317 327
14. E. Halliday, J. Winkelstein, and A.D. Webster Enteroviral infections in primary immunodeficiency (PID): A survey of morbidity and mortality J. Infect. 46 2003 1 8
15. M. Hosoya, M. Sato, K. Honzumi, M. Katayose, H. Sakuma, H. Ishiko, Y. Shimada, K. Kato, and H. Suzuki Application of polymerase chain reaction and subsequent phylogenetic analysis to the diagnosis of enteroviral infection in the central nervous system J. Clin. Virol. 25 2002 S27 S38
16. T. Hyypiä, T. Hovi, N.J. Knowles, and G. Stanway Classification of enteroviruses based on molecular and biological properties J. Gen. Virol. 78 1997 1 11
17. A.M.Q. King, F. Brown, P. Christian, T. Hovi, T. Hyypiä, N.J. Knowles, S.M. Lemon, P.D. Minor, A.C. Palmenberg, T. Skern, and G. Stanway Picornaviridae M.H.V. Van Regenmortel C.M. Fauquet D.H.L. Bishop E.B. Carstens M.K. Estes S.M. Lemon J. Maniloff M.A. Mayo D.J. McGeoch C.R. Pringle R.B. Wickner Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses 2000 Academic Press New York 657 673
18. H. Kopecka, B. Brown, and M. Pallansch Genotypic variation in coxsackievirus B5 isolates from three different outbreaks in the United States Virus Res 38 1995 125 136
19. C. Kottaridi, E. Bolanaki, and P. Markoulatos Amplification of echoviruses genomic regions by different RT-PCR protocols-a comparative study Mol. Cell. Probes 18 2004 263 269
20. M. Lab, B. Krikelis, N. Spyrou, K. Kouloumbis, G. Pavlides, and C. Série Isolement du virus Echo 14 au cours d' une épidémie de syndromes respiratoires Archieves de l' Institut Pasteur Hellenique 1980 Helenic Pasteur Institute Athens 59 70
21. M.M. Meqdam, M.M. Khalousi, and A. Al-Shurman Enteroviral meningitis in Northern Jordan: Prevalence and association with clinical findings J. Med. Virol. 66 2002 224 228
22. J.L. Melnick Enteroviruses: Polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses B.N. Fields D.M. Knipe P.M. Howley Fields virology 1996 Lippincott-Raven Philadelphia 655 712
23. M.S. Oberste, K. Maher, D.R. Kilpatrick, M.R. Flemister, and B.A. Brown Typing of human enteroviruses by partial sequencing of VP1 J. Clin. Microbiol. 37 1999 1288 1293
24. M.S. Oberste, K. Maher, and D.R. Kilpatrick Molecular evolution of the human enteroviruses: Correlation of serotype with VP1 sequence and application to picornavirus classification J. Virol. 73 1999 1941 1948
25. M.S. Oberste, K. Maher, M.R. Flemister, G. Marchetti, D.R. Kilpatrick, and M.A. Pallansch Comparison of classic and molecular approaches for the identification of untypeable enteroviruses J. Clin. Microbiol. 38 2000 1170 1174
26. M.S. Oberste, D. Schnurr, K. Maher, S. al-Busaidy, and M.A. Pallansch Molecular identification of new picornaviruses and characterization of a proposed enterovirus 73 serotype J. Gen. Virol. 82 2001 409 416
27. M.S. Oberste, W.A. Nix, K. Maher, and M.A. Pallansch Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing J Clin Virol 26 2003 375 377
28. D.C. Pevear, M.E. Seipel, M. Pallansch, and M.A. McKinlay In vitro activity of VP 63843 against field isolates of non polio enteroviruses Presented at Interscience Conference on Antimicrobial Agents and Chemotherapy, New Orleans, LA 1996
29. D.C. Pevear, M. Tull, M.E. Seipel, and J.M. Groarke Activity of pleconaril against enteroviruses Antimicrob. Agents. Chemother. 43 1999 2109 2115
30. G. Palacios, I. Casas, D. Cisterna, G. Trallero, A. Tenorio, and C. Freire Molecular epidemiology of echovirus 30: Temporal circulation and prevalence of single lineages J. Virol. 76 2002 4940 4949
31. T. Pulli, P. Koskimies, and T. Hyypia Molecular comparison of coxsackie A virus serotypes Virology 212 1995 30 38
32. N. Siafakas, P. Markoulatos, and G. Stanway Variability in molecular typing of coxsackie A viruses by RFLP analysis and sequencing J. Clin. Lab. Anal. 16 2002 59 69
33. N. Siafakas, P. Markoulatos, C. Vlachos, G. Stanway, G. Tzanakaki, and J. Kourea-Kremastinou Molecular sub-grouping of enterovirus reference and wild type strains into distinct genetic clusters using a simple RFLP assay Mol. Cell. Probes 17 2003 113 123
34. N. Siafakas, P. Markoulatos, and S. Levidiotou-Stefanou Molecular identification of enteroviruses responsible for an outbreak of aseptic meningitis; implications in clinical practice and epidemiology Mol. Cell. Probes 18 2004 389 398
35. T. Takami, T. Nakayama, H. Kawashima, Y. Takei, K. Takekuma, and A. Hoshika Determination of enterovirus serotype inferred from sequence analysis of PCR products J. Clin. Virol. 26 2003 355 359
36. I. Thoelen, P. Lemey, I. Van der Donck, K. Beuselinck, AM. Lindberg, and M. Van Ranst Molecular typing and epidemiology of enteroviruses identified from an outbreak of aseptic meningitis in Belgium during the summer of 2000 J. Med. Virol. 70 2003 420 429
37. I. Thoelen, E. Moës, P. Lemey, S. Mostmans, E. Wollants, A.M. Lindberg, A. Vandamme, and M. Van Ranst Analysis of the serotype and genotype correlation of VP1 and the 5′ noncoding region in an epidemiological survey of the human Enterovirus B species J. Clin. Microbiol. 42 2004 963 971
38. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
39. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 4876 4882
40. G. Trallero, I. Casas, A. Avellón, C. Pérez, A. Tenorio, and A. De La Loma First epidemic of aseptic meningitis due to echovirus type 13 among Spanish children Epidemiol. Infect. 130 2003 251 256
41. W.A. Verstrepen, P. Bruynseels, and A.H. Mertens Evaluation of a rapid real-time RT-PCR assay for detection of enterovirus RNA in cerebrospinal fluid specimens J. Clin. Virol. 25 2002 S39 S43
42. World Health Organization Polio laboratory manual 4th ed. 2004 World Health Organization, Department of Immunization, Vaccines and Biologicals, CH-1211 Geneva 27 Switzerland