Molecular typing and epidemiology of enteroviruses identified from an outbreak of aseptic meningitis in Belgium during the summer of 2000

Journal of Medical Virology

Volumn 70, Issue 3, 2003, Pages 420-429

  Thoelen, Inge ^a   Lemey, Philippe ^a   Van der Donck, Ingrid ^a   Beuselinck, Kurt ^a   Lindberg, A Michael ^b   Van Ranst, Marc ^a  

^a REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

^b LINNAEUS UNIVERSITY   (Sweden)

Author keywords

Cerebrospinal fluid; Enterovirus; Meningitis; RT nested PCR

Indexed keywords

CAPSID PROTEIN; PROTEIN VP1; VIRUS RNA;

ADOLESCENT; ADULT; ARTICLE; ASEPTIC MENINGITIS; BELGIUM; CEREBROSPINAL FLUID ANALYSIS; CHILD; COXSACKIE VIRUS B; COXSACKIE VIRUS B4; COXSACKIE VIRUS B5A; COXSACKIE VIRUS B5B; ENTEROVIRUS; EPIDEMIOLOGICAL DATA; GEOGRAPHIC DISTRIBUTION; HUMAN; INFANT; MAJOR CLINICAL STUDY; MOLECULAR TYPING; NUCLEOTIDE SEQUENCE; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEROTYPE; SUMMER; UNINDEXED SEQUENCE; VIRUS GENE; VIRUS IDENTIFICATION; VIRUS STRAIN;

ADOLESCENT; ADULT; BELGIUM; CHILD; CHILD, PRESCHOOL; DISEASE OUTBREAKS; DNA-BINDING PROTEINS; ENTEROVIRUS; ENTEROVIRUS B, HUMAN; ENTEROVIRUS INFECTIONS; EPIDEMIOLOGY, MOLECULAR; GENOTYPE; HUMANS; INFANT; MENINGITIS, ASEPTIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; POLYMERASE CHAIN REACTION; RNA, VIRAL; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

COXSACKIEVIRUS; ECHOVIRUS; ENTEROVIRUS; HUMAN ECHOVIRUS 13; HUMAN ECHOVIRUS 16; HUMAN ECHOVIRUS 18; HUMAN ECHOVIRUS 30; HUMAN ECHOVIRUS 6; HUMAN ECHOVIRUS 7;

EID: 0038024094     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmv.10412     Document Type: Article

References (34)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
2. Andersson P, Edman K, Lindberg MA. 2002. Molecular analysis of the echovirus 18 prototype: evidence of interserotypic recombination with echovirus 9. Virus Res 85:71-83.
3. Caro V, Guillot S, Delpeyroux F, Crainic R. 2001. Molecular strategy for 'serotyping' of human enteroviruses. J Gen Virol 82:79-91.
4. Casas I, Palacios GF, Trallero G, Cisterna D, Freire MC, Tenorio A. 2001. Molecular characterization of human enteroviruses in clinical samples: comparison between VP2, VP1, and RNA polymerase regions using RT nested PCR assays and direct sequencing of products. J Med Virol 65:138-148.
5. Drake JW, Holland JJ. 1999. Mutation rates among RNA viruses. Proc Natl Acad Sci USA 96:13910-13913.
6. Hyypiä T, Hovi T, Knowles NJ, Stanway G. 1997. Classification of enteroviruses based on molecular and biological properties. J Gen Virol 78:1-11.
7. Ishiko H, Shimada Y, Yonaha M, Hashimoto O, Hayashi A, Sakae K, Takeda N. 2002. Molecular diagnosis of human enteroviruses by phylogeny-based classification by use of the VP4 sequence. J Infect Dis 185:744-754.
8. Kumar S, Tamura K, Jakobsen IB, Nei M. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
9. Mateu MG. 1995. Antibody recognition of picornaviruses and escape from neutralization: a structural view. Virus Res 38:1-24.
10. Melnick JL. 1996. Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses. In: Fields BN, Knipe DM, Howley PM, Chanock RM, Melnick JM, Monath TP, Roizman B, Straus SE, editors. Fields Virology. Third ed. Philadelphia: Lippincott-Raven. p 655-712.
11. Minor PD. 1990. Antigenic structure of picornaviruses. Curr Top Microbiol Immunol 161:121-154.
12. Muckelbauer JK, Kremer M, Minor I, Diana G, Dutko FJ, Groarke J, Pevear DC, Rossmann MG. 1995. The structure of coxsackievirus B3 at 3.5 A resolution. Structure 3:653-667.
13. Muir P, Kämmerer U, Korn K, Mulders MN, Pöyry T, Weissbrich B, Kandolf R, Cleator GM, Van Loon AM. 1998. Molecular typing of enteroviruses: current status and future requirements. Clin Microbiol Rev 11:202-227.
14. Nicholas KB, Nicholas HB, Deerfield DW. 1997. GeneDoc: analysis and visualization of genetic variation. Embnet News 4:14.
15. Norder H, Bjerregaard L, Magnius LO. 2001. Homotypic echoviruses share aminoterminal VP1 sequence homology applicable for typing. J Med Virol 63:35-44.
16. Oberste MS, Maher K, Pallansch MA. 1998. Molecular phylogeny of all human enterovirus serotypes based on comparison of sequences at the 5′ end of the region encoding VP2. Virus Res 58:35-43.
17. Oberste MS, Maher K, Kilpatrick DR, Pallansch MA. 1999a. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J Virol 73:1941-1948.
18. Oberste MS, Maher K, Kilpatrick DR, Flemister MR, Brown BA, Pallansch MA. 1999b. Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol 37:1288-1293.
19. Oberste MS, Maher K, Kennett ML, Campbell JJ, Carpenter MS, Schnurr D, Pallansch MA. 1999c. Molecular epidemiology and genetic diversity of echovirus type 30 (E30): genotypes correlate with temporal dynamics of E30 isolation. J Clin Microbiol 37:3928-3933.
20. Oberste MS, Maher K, Flemister MR, Marchetti G, Kilpatrick DR, Pallansch MA. 2000. Comparison of classic and molecular approaches for the identification of untypeable enteroviruses. J Clin Microbiol 38:1170-1174.
21. Pöyry T, Kinnunen L, Hyypiä T, Brown B, Horsnell C, Hovi T, Stanway G. 1996. Genetic and phylogenetic clustering of enteroviruses. J Gen Virol 77:1699-1717.
22. Palacios G, Casas I, Cisterna D, Trallero G, Tenorio A, Freire C. 2002. Molecular epidemiology of echovirus 30: temporal circulation and prevalence of single lineages. J Virol 76:4940-4949.
23. Pearson WR, Lipman DJ. 1988. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448.
24. Quirk M. 2001. Echovirus to be considered in meningitis diagnosis. Lancet Infect Dis 1:220.
25. Reimann BY, Zell R, Kandolf R. 1991. Mapping of a neutralizing antigenic site of Coxsackievirus B4 by construction of an antigen chimera. J Virol 65:3475-3480.
26. Romero JR. 1999. Reverse-transcription polymerase chain reaction detection of the enteroviruses. Arch Pathol Lab Med 123:1161b-1169.
27. Rotbart HA. 1995. Meningitis and encephalitis. In: Rotbart HA, editor. Human Enterovirus Infections. Washington, DC: ASM Press. p 271-289.
28. Santti J, Vainionpää R, Hyypiä T. 1999a. Molecular detection and typing of human picornaviruses. Virus Res 62:177-183.
29. Santti J, Hyypiä T, Kinnunen L, Salminen M. 1999b. Evidence of recombination among enteroviruses. J Virol 73:8741-8749.
30. Santti J, Harvala H, Kinnunen L, Hyypiä T. 2000. Molecular epidemiology and evolution of coxsackievirus A9. J Gen Virol 81:1361-1372.
31. Savolainen C, Hovi T, Mulders MN. 2001. Molecular epidemiology of echovirus 30 in Europe: succession of dominant sublineages within a single major genotype. Arch Virol 146:521-537.
32. Tatusova TA, Madden TL. 1999. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174:247-250.
33. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
34. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882.