Formation, maintenance and function of the shoot apical meristem in rice

Plant Molecular Biology

Volumn 60, Issue 6 SPEC. ISS., 2006, Pages 827-842

  Itoh, Jun Ichi ^a   Sato, Yutaka ^b   Nagato, Yasuo ^a   Matsuoka, Makoto ^b  

^a UNIVERSITY OF TOKYO   (Japan)

^b NAGOYA UNIVERSITY   (Japan)

Author keywords

Axis establishment; Embryogenesis; Mutation; Oryza sativa; Phytomer; Plastochron

Indexed keywords

CROPS;

PLANT MORPHOLOGIES; ROOT APICAL MERISTEM (RAM); SHOOT APICAL MERISTEM (SAM);

PLANTS (BOTANY);

INDOLEACETIC ACID DERIVATIVE;

BIOLOGICAL MODEL; CYTOLOGY; GENE; GENETIC MARKER; GROWTH, DEVELOPMENT AND AGING; MERISTEM; METABOLISM; MUTATION; PHYSIOLOGY; PLANT; PLANT LEAF; PLANT SEED; PRENATAL DEVELOPMENT; REVIEW; RICE;

GENES, PLANT; GENETIC MARKERS; INDOLEACETIC ACIDS; MERISTEM; MODELS, BIOLOGICAL; MUTATION; ORYZA SATIVA; PLANT LEAVES; PLANT SHOOTS; SEEDS;

GENES; MERISTEMS; PLANTS; RICE; SHOOTS;

ARABIDOPSIS; EMBRYOPHYTA; LILIOPSIDA; ORYZA SATIVA; POACEAE;

EID: 33646926390     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-005-5579-3     Document Type: Review

References (99)

1. M. Aida T. Ishida M. Tasaka 1999 Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes Development 126 1563 1570
2. G.H. Anderson N.D. Alvarez C. Gilman D.C. Jeffares V.C. Trainor M.R. Hanson B. Veit 2004 Diversification of genes encoding mei2-like RNA binding proteins in plants Plant Mol. Biol. 54 653 670
3. M. Ashikari H. Sakakibara S. Lin T. Yamamoto T. Takashi A. Nishimura E.R. Angeles Q. Qian H. Kitano M. Matsuoka 2005 Cytokinin oxidase regulates rice grain production Science 309 741 745
4. P. Bommert N. Satoh-Nagasawa D. Jackson H.Y. Hirano 2005a Genetics and evolution of inflorescence and flower development in grasses Plant Cell Physiol. 46 69 78
5. P. Bommert C. Lunde J. Nardmann E. Vollbrecht M. Running D. Jackson S. Hake W. Werr 2005b thick tassel dwarf1 encodes a putative maize ortholog of the Arabidopsis CLAVATA1 leucine-rich repeat receptor-like kinase Development 132 1235 1245
6. U. Brand J.C. Fletcher M. Hobe E.M. Meyerowitz R. Simon 2000 Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity Science 289 617 619
7. J.D. Callos J.I. Medford 1994 Organ position and pattern formation in the shoot apex Plant J. 6 1 7
8. A.M. Chaudhury S. Letham S. Craig E.S. Dennis 1993 amp1: a mutant with high cytokinin levels and altered embryonic pattern, faster vegetative growth, constitutive photomorphogenesis and precocious flowering Plant J. 4 907 916
9. H.T. Cho H. Kende 1998 Tissue localization of expansins in deepwater rice Plant J. 15 805 812
10. S.E. Clark M.P. Running E.M. Meyerowitz 1993 CLAVATA1, a regulator of meristem and flower development in Arabidopsis Development 119 397 418
11. S.E. Clark M.P. Running E.M. Meyerowitz 1995 CLAVATA3 is a specific regulator of shoot and floral meristem development affecting the same processes as CLAVATA1 Development 121 2057 2067
12. S.E. Clark R.W. Williams E.M. Meyerowitz 1997 The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis Cell 89 575 585
13. J. Doebley A. Stec L. Hubbard 1997 The evolution of apical dominance in maize Nature 386 485 488
14. K. Endrizzi B. Moussian A. Haecker J.Z. Levin T. Laux 1996 The SHOOT MERISTEMLESS gene is required for maintenance of undifferentiated cells in Arabidopsis shoot and floral meristems and acts at a different regulatory level than the meristem genes WUSCHEL and ZWILLE Plant J. 10 967 979
15. A.J. Fleming S. [tmp] McQueen-Mason T. Mandel C. Kuhlemeier 1997 Induction of leaf primordia by the cell wall protein expansin Science 276 1415 1418
16. C. Fischer V. Speth S. Fleig-Eberenz G. Neuhaus 1997 Induction of zygotic polyembryos in wheat: influence of auxin polar transport Plant Cell 9 1767 1780
17. J.C. Fletcher 2002 Shoot and floral meristem maintenance in Arabidopsis Annu. Rev. Plant. Biol. 53 45 66
18. J.C. Fletcher U. Brand M.P. Running R. Simon E.M. Meyerowitz 1999 Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems Science 283 1911 1914
19. J. Friml A. Vieten M. Sauer D. Weijers H. Schwarz T. Hamann R. Offringa G. Jürgens 2003 Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis Nature 426 147 153
20. A. Giulini J. Wang D. Jackson 2004 Control of phyllotaxy by the cytokinin-inducible response regulator homologue ABPHYL1 Nature 430 1031 1034
21. T. Greb O. Clarenz E. Schafer D. Muller R. Herrero G. Schmitz K. Theres 2003 Molecular analysis of the LATERAL SUPPRESSOR gene in Arabidopsis reveals a conserved control mechanism for axillary meristem formation Genes Dev. 17 1175 1187
22. P.B. Green 1994 Connecting gene and hormone action to form, pattern and organogenesis: biophysical transductions J. Exp. Bot. 45 1775 1788
23. P.B. Green C.S. Steele S.C. Rennich 1996 Phyllotactic patterns: a biophysical mechanism for their origin Ann. Bot. 77 515 527
24. K. Hadfi V. Speth G. Neuhaus 1998 Auxin-induced developmental patterns in Brassica juncea embryos Development 125 879 887
25. A. Haecker R. Gross-Hardt B. Geiges A. Sarkar H. Breuninger M. Herrmann T. Laux 2004 Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana Development 131 657 668
26. A. Hay H. Kaur A. Phillips P. Hedden S. Hake M. Tsiantis 2002 The gibberellin pathway mediates KNOTTED1-type homeobox function in plants with different body plans Curr. Biol. 12 1557 1565
27. C.A. Helliwell A.N. Chin-Atkins I.W. Wilson R. Chapple E.S. Dennis A. Chaudhury 2001 The Arabidopsis AMP1 gene encodes a putative glutamate carboxypeptidase Plant Cell 13 2115 2125
28. D.C. Henderson G.J. Muehlbauer M.J. Scanlon 2005 Radial leaves of the maize mutant ragged seedling2 retain dorsiventral anatomy Dev. Biol. 282 455 466
29. H. Hirochika E. Guiderdoni G. An Y.I. Hsing M.Y. Eun C.D. Han N. Upadhyaya S. Ramachandran Q. Zhang A. Pereira V. Sundaresan H. Leung 2004 Rice mutant resources for gene discovery Plant Mol. Biol. 54 325 334
30. S.K. Hong T. Aoki H. Kitano H. Satoh Y. Nagato 1995 Phenotypic diversity of 188 rice embryo mutants Dev. Genet. 16 298 310
31. K. Ikeda N. Nagasawa Y. Nagato 2005 ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice Dev. Biol. 282 349 360
32. International Rice Genome Sequencing Project 2005 The map-based sequence of the rice genome Nature 436 793 800
33. S. Ishikawa M. Maekawa T. Arite K. Onishi I. Takamure J. Kyozuka 2005 Suppression of tiller bud activity in tillering dwarf mutants of rice Plant Cell Physiol. 46 79 86
34. M. Ito Y. Sato M. Matsuoka 2002 Involvement of homeobox genes in early body plan of monocot Int. Rev. Cytol. 218 1 35
35. J.I. Itoh Y. Nagato 1998 A mutation affecting phyllotaxis and leaf blade-sheath boundary in rice Rice Genet. Newsl. 15 90 93
36. J.I. Itoh A. Hasegawa H. Kitano Y. Nagato 1998 A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice Plant Cell 10 1511 1522
37. J.I. Itoh H. Kitano M. Matsuoka Y. Nagato 2000 Shoot organization genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice Plant Cell 12 2161 2174
38. J.I. Itoh K. Nonomura K. Ikeda S. Yamaki Y. Inukai H. Yamagishi H. Kitano Y. Nagato 2005 Rice plant development: from zygote to spikelet Plant Cell Physiol. 46 23 47
39. D. Jackson S. Hake 1999 Control of phyllotaxy in maize by the abphyl1 gene Development 126 315 323
40. S. Jeong A.E. Trotochaud S.E. Clark 1999 The Arabidopsis CLAVATA2 gene encodes a receptor-like protein required for the stability of the CLAVATA1 receptor-like kinase Plant Cell 11 1925 1934
41. N. Kamiya A. Nishimura N. Sentoku E. Takabe Y. Nagato H. Kitano M. Matsuoka 2003 Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis Plant Cell Physiol. 44 875 883
42. M. Kaneko H. Itoh Y. Inukai T. Sakamoto M. Ueguchi-Tanaka M. Ashikari M. Matsuoka 2003 Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants? Plant J. 35 104 115
43. J.M. Kayes S.E. Clark 1998 CLAVATA2, a regulator of meristem and organ development in Arabidopsis Development 125 3843 3851
44. R.A. Kerstetter S. Hake 1997 Shoot meristem formation in vegetative development Plant Cell 9 1001 1010
45. R.A. Kerstetter D. Laudencia-Chingcuanco L.G. Smith S. Hake 1997 Loss-of-function mutations in the maize homeobox gene, knotted1, are defective in shoot meristem maintenance Development 124 3045 3054
46. K. Kikuchi M. Ueguchi-Tanaka K.T. Yoshida Y. Nagato M. Matsusoka H.Y. Hirano 2000 Molecular analysis of the NAC gene family in rice Mol. Gen. Genet. 262 1047 1051
47. C.A. Kidner R.A. Martienssen 2005 The developmental role of microRNA in plants Curr. Opin. Plant Biol. 8 38 44
48. H. Kitano Y. Tamura H. Satoh Y. Nagato 1993 Hierarchical regulation of organ differentiation during embryogenesis in rice Plant J. 3 607 610
49. M. Komatsu M. Maekawa K. Shimamoto J. Kyozuka 2001 The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development Dev. Biol. 231 364 373
50. K. Komatsu M. Maekawa S. Ujiie Y. Satake I. Furutani H. Okamoto K. Shimamoto J. Kyozuka 2003a LAX and SPA: major regulators of shoot branching in rice Proc. Natl. Acad. Sci. USA 100 11765 11770
51. M. Komatsu A. Chujo Y. Nagato K. Shimamoto J. Kyozuka 2003b FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets Development 130 3841 3850
52. T. Laux K.F. Mayer J. Berger G. Jürgens 1996 The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis Development 122 87 96
53. X. Li Q. Qian Z. Fu Y. Wang G. Xiong D. Zeng X. Wang X. Liu S. Teng F. Hiroshi H. Fujimoto M. Yuan D. Luo B. Han J. Li 2003 Control of tillering in rice Nature 422 618 621
54. C. Lincoln J. Long J. Yamaguchi K. Serikawa S. Hake 1994 A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants Plant Cell 6 1859 1876
55. J.A. Long E.I. Moan J.I. Medford M.K. Barton 1996 A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis Nature 379 66 69
56. K.F. Mayer H. Schoof A. Haecker M. Lenhard G. Jürgens T. Laux 1998 Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem Cell 95 805 815
57. K. Miyoshi B.O. Ahn T. Kawakatsu Y. Ito J. Itoh Y. Nagato N. Kurata 2004 PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450 Proc. Natl. Acad. Sci. USA 101 875 880
58. N. Nagasawa M. Miyoshi H. Kitano H Satoh Y. Nagato 1996 Mutations associated with floral organ number in rice Planta 198 627 633
59. J. Nardmann J. Ji W. Werr M.J. Scanlon 2004 The maize duplicate genes narrow sheath1 and narrow sheath2 encode a conserved homeobox gene function in a lateral domain of shoot apical meristems Development 131 2827 2839
60. A. Nishimura M. Ito N. Kamiya Y. Sato M. Matsuoka 2002 OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice Plant J. 30 189 201
61. Kerstetter, R.A. and Hake, S. 1997. Shoot meristem formation in vegetative development. Plant Cell 9: 1001-1010.
62. Obara, M., Ikeda, K., Itoh, J.I. and Nagato, Y. 2004. Characterization of leaf lateral symmetry 1 mutant in rice. Breed. Sci. 157-163.
63. N. Paquet M. Bernadet H. Morin J. Traas M. Dron C. Charon 2005 Expression patterns of TEL genes in Poaceae suggest a conserved association with cell differentiation J. Exp. Bot. 56 1605 1614
64. S. Pien J. Wyrzykowska S. [tmp] McQueen-Mason C. Smart A. Fleming 2001 Local expression of expansin induces the entire process of leaf development and modifies leaf shape Proc. Natl. Acad. Sci. USA 98 11812 11817
65. R. Pilu G. Consonni E. Busti A.P. [tmp] MacCabe A. Giulini S. Dolfini G. Gavazzi 2002 Mutations in two independent genes lead to suppression of the shoot apical meristem in maize Plant Physiol. 128 502 511
66. R.S. Poethig E.J. Szymkowick 1995 Clonal analysis of leaf development in maize Mydica 40 67 76
67. D. Reinhardt F. Wittwer T. Mandel C. Kuhlemeier 1998 Localized upregulation of a new expansin gene predicts the site of leaf formation in the tomato meristem Plant Cell 10 1427 1437
68. D. Reinhardt T. Mandel C. Kuhlemeier 2000 Auxin regulates the initiation and radial position of plant lateral organs Plant Cell 12 507 518
69. D. Reinhardt E.R. Pesce P. Stieger T. Mandel K. Baltensperger M. Bennett J. Traas J. Friml C. Kuhlemeier 2003 Regulation of phyllotaxis by polar auxin transport Nature 426 255 260
70. L. Reiser P. Sánchez-Baracaldo S. Hake 2004 Knots in the family tree: evolutionary relationships and functions of knox homeobox genes Plant Mol. Biol. 42 151 166
71. W.A. Rensink C.R. Buell 2004 Arabidopsis to rice. Applying knowledge from a weed to enhance our understanding of a crop species Plant Physiol. 135 622 629
72. E. Rojo V.K. Sharma V. Kovaleva N.V. Raikhel J.C. Fletcher 2002 CLV3 is localized to the extracellular space, where it activates the Arabidopsis CLAVATA stem cell signaling pathway Plant Cell 14 969 977
73. T. Sakamoto N. Kamiya M. Ueguchi-Tanaka S. Iwahori M. Matsuoka 2001a KNOX homeodomain protein directly suppresses the expression of a gibberellin biosynthetic gene in the tobacco shoot apical meristem Genes Dev. 15 581 590
74. T. Sakamoto M. Kobayashi H. Itoh A. Tagiri T. Kayano H. Tanaka S. Iwahori M. Matsuoka 2001b Expression of a gibberellin 2-oxidase gene around the shoot apex is related to phase transition in rice Plant Physiol. 125 1508 1516
75. T. Sasaki T. Matsumoto B.A. Antonio Y. Nagamura 2005 From mapping to sequencing, post-sequencing and beyond Plant Cell Physiol. 46 3 13
76. Y. Sato S.K. Hong A. Tagiri H. Kitano N. Yamamoto Y. Nagato M. Matsuoka 1996 A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis Proc. Natl. Acad..Sci. USA 93 8117 8122
77. Y. Sato N. Sentoku Y. Nagato M. Matsuoka 1998 Isolation and characterization of a rice homeobox gene, OSH15 Plant Mol. Biol. 38 983 998
78. N. Satoh S.K. Hong A. Nishimura M. Matsuoka H. Kitano Y. Nagato 1999 Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes Development 126 3629 3636
79. N. Satoh J. Itoh Y. Nagato 2003 The SHOOTLESS2 and SHOOTLESS1 genes are involved in both initiation and maintenance of the shoot apical meristem through regulating the number of indeterminate cells Genetics 164 335 346
80. M.J. Scanlon 2003 The polar auxin transport inhibitor N-1-naphthylphthalamic acid disrupts leaf initiation, KNOX protein regulation, and formation of leaf margins in maize Plant Physiol. 133 597 605
81. M.J. Scanlon R.G. Schneeberger M. Freeling 1996 The maize mutant narrow sheath fails to establish leaf margin identity in a meristematic domain Development 122 1683 1691
82. R. Schneeberger M. Tsiantis M. Freeling J.A. Langdale 1998 The rough sheath2 gene negatively regulates homeobox gene expression during maize leaf development Development 125 2857 2865
83. H. Schoof M. Lenhard A. Haecker K.F. Mayer G. Jurgens T. Laux 2000 The stem cell population of Arabidopsis shoot meristems is maintained by a regulatory loop between the CLAVATA and WUSCHEL genes Cell 100 635 644
84. K. Schumacher T. Schmitt M. Rossberg G. Schmitz K. Theres 1999 The Lateral suppressor (Ls) gene of tomato encodes a new member of the VHIID protein family Proc. Natl. Acad. Sci. USA 96 290 295
85. J.L. Selker G.L. Steucek P.B. Green 1992 Biophysical mechanisms for morphogenetic progression at the shoot apex Dev. Biol. 153 29 43
86. N. Sentoku Y. Sato N. Kurata Y. Ito H. Kitano M. Matsuoka 1999 Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development Plant Cell 11 1651 1664
87. M. Snow R. Snow 1931 Experiments on phyllotaxy. I. The effect of isolating a primordium Phil. Trans. R. Soc. Lond. 25 301 322
88. T.A. Steeves I.M. Sussex 1989 Patterns in Plant Development Cambridge University Press New York
89. T. Suzaki M. Sato M. Ashikari M. Miyoshi Y. Nagato H.Y. Hirano 2004 The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1 Development 131 5649 5657
90. F. Taguchi-Shiobara Z. Yuan S. Hake D. Jackson 2001 The fasciated ear2 gene encodes a leucine-rich repeat receptor-like protein that regulates shoot meristem proliferation in maize Genes Dev. 15 2755 2766
91. T. Takeda Y. Suwa M. Suzuki H. Kitano M. Ueguchi-Tanaka M. Ashikari M. Matsuoka C. Ueguchi 2003 The OsTB1 gene negatively regulates lateral branching in rice Plant J. 33 513 520
92. M.C. Timmermans N.P. Schultes J.P. Jankovsky T. Nelson 1998 Leafbladeless1 is required for dorsoventrality of lateral organs in maize Development 125 2813 2823
93. M.C. Timmermans A. Hudson P.W. Becraft T. Nelson 1999 ROUGH SHEATH2: a Myb protein that represses knox homeobox genes in maize lateral organ primordia Science 284 151 153
94. M. Tsiantis R. Schneeberger J.F. Golz M. Freeling J.A. Langdale 1999 The maize rough sheath2 gene and leaf development programs in monocot and dicot plants Science 284 154 156
95. B. Veit S.P. Briggs R.J. Schmidt M.F. Yanofsky S. Hake 1998 Regulation of leaf initiation by the terminal ear 1 gene of maize Nature 393 166 168
96. C.W. Wardlaw 1949 Experiments on organogenesis in ferns Growth 13 suppl 93 131
97. D. Weijers G. Jürgens 2005 Auxin and embryo axis formation: the ends in sight? Curr. Opin. Plant Biol. 8 32 37
98. V. Willemsen B. Scheres 2004 Mechanisms of pattern formation in plant embryogenesis Annu. Rev. Genet. 38 587 614
99. M. Xu L. Zhu H. Shou P. Wu 2005 A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice Plant Cell Physiol 46 1674 1681