From mapping to sequencing, post-sequencing and beyond

Plant and Cell Physiology

Volumn 46, Issue 1, 2005, Pages 3-13

  Sasaki, Takuji ^a   Matsumoto, Takashi ^a   Antonio, Baltazar A ^a   Nagamura, Yoshiaki ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Applied genomics; Database; DNA; Functional genomics; Genome resources; Genome sequencing

Indexed keywords

CENTROMERE; CHROMOSOME MAP; COOPERATION; DNA SEQUENCE; GENE LIBRARY; GENETICS; GENOME; GENOMICS; INTERNATIONAL COOPERATION; JAPAN; MUTATION; PLANT CHROMOSOME; RETROPOSON; RICE; SHORT SURVEY;

CENTROMERE; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; COOPERATIVE BEHAVIOR; GENE LIBRARY; GENOME, PLANT; GENOMICS; INTERNATIONAL COOPERATION; JAPAN; MUTATION; ORYZA SATIVA; RETROELEMENTS; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS);

EID: 14644388187     PISSN: 00320781     EISSN: None     Source Type: Journal    
DOI: 10.1093/pcp/pci503     Document Type: Short Survey

References (38)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) J. Mol. Biol. 215: 403-410.
2. Antonio, B.A., Miyao, A., Nagamura, Y. and Sasaki, T. (2003) Rice Genet. Newslett. 20: 10-11.
3. Baba, T., Katagiri, S., Tanoue, H., Tanaka, R., Chiden, Y. et al. (2000) Bull. Natl Inst. Agrobiol. Res. 14: 41-52.
4. Burge, C. and Karlin, S. (1997) J. Mol. Biol. 268: 78-94.
5. Courtois, B., Lafitte, R., Robin, S., Shen, L., Pathan, M.S. and Nguyen, H. (2003) In Rice Science: Innovations and Impact for Livelihood. Edited by Mew, T.W., Brar, D.S., Peng, S., Dawe, D. and Hardy, B. pp. 231-241. IRRI.
6. Cheng, Z., Dong, F., Langdon, T., Ouyang, S., Buell, C.R., Gu, M., Blattner, F.R. and Jiang, J. (2002) Plant Cell 14: 1691-1704.
7. Devos, K.M. and Gale, M.D. (1997) Plant Mol. Biol. 35: 3-15.
8. Ewing, B. and Green, P. (1998) Genome Res. 8: 175-185.
9. Feng, Q., Zhang, Y., Hao, P., Wang, S., Fu, G. et al. (2002) Nature 420: 316-320.
10. Harushima, Y., Yano, M., Shomura, A., Sato, M., Shimano, T. et al. (1998) Genetics 148: 479-494.
11. Kurata, N., Nagamura, Y., Yamamoto, K., Harushima, Y., Sue, N. et al. (1994) Nat. Genet. 8: 365-372.
12. Kurata, N., Umehara, Y., Tanoue, H. and Sasaki, T. (1997) Plant Mol. Biol. 35: 101-113.
13. Mao, L., Wood, T.C., Yu, Y., Budiman, M.A., Tomkins, J. et al. (2000) Genome Res. 10: 982-990.
14. Martienssen, R.A., Rabinowicz, P.D., O'Shaughnessy, A. and McCombie, W.R. (2004) Curr. Opin. Plant Biol. 7: 102-107.
15. Miyao, A., Tanaka, K., Murata, K., Sawaki, H., Takeda, S., Abe, K., Shinozuka, Y., Onosato, K. and Hirochika, H. (2003) Plant Cell 15: 1771-1780.
16. Mouse Genome Sequencing Consortium (2002) Nature 420: 520-562.
17. Myers, E.W., Sutton, G.G., Delcher, A.L., Dew, I.M., Fasulo, D.P. et al. (2000) Science 287: 2196-2204.
18. Nagaki, K., Cheng, Z., Ouyang, S., Talbert, P.B., Kim, M., Jones, K.M., Henikoff, S., Buell, C.R. and Jiang, J. (2004) Nat. Genet. 36: 138-145.
19. Rice Chromosome 10 Sequencing Consortium (2003) Science 300: 1566-1569.
20. Rice Full-length cDNA Consortium (2003) Science 301: 376-379.
21. Saji, S., Umehara, Y., Antonio, B.A., Yamane, H., Tanoue, H. et al. (2001) Genome 44: 32-37.
22. Sakata, K., Antonio, B.A., Mukai, Y., Nagasaki, H., Sakai, Y., Makino, K. and Sasaki, T. (2000) Nucleic Acids Res. 28: 97-101.
23. Sakata, K., Nagamura, Y., Numa, H., Antonio, B.A., Nagasaki, H. et al. (2002) Nucleic Acids Res. 30: 98-102.
24. Sasaki, T. (2003) Breeding Science 53: 281-289.
25. Sasaki, T. (2004) Farming Japan 38: 18-24.
26. Sasaki, T. and Burr, B. (2000) Curr. Opin. Plant Biol. 3: 138-141.
27. Sasaki, T., Matsumoto, T., Yamamoto, K., Sakata, K., Baba, T. et al. (2002) Nature 420: 312-316.
28. Soeda, E., Hou, D.X., Osoegawa, K., Atsuchi, Y., Yamagata, T., Shimokawa, T., Kishida, H., Soeda, E., Okano, S. and Chumakov, I. (1995) Genomics 25: 73-84.
29. Umehara, Y., Inagaki, A., Tanoue, H., Yasukochi, Y., Nagamura, Y., Saji, S., Otsuki, Y., Fujimura, T., Kurata, N. and Minobe, Y. (1995) Mol. Breed. 1: 79-89.
30. Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., et al. (2001) Science 291: 1304-1351.
31. Wang, S.Y., Cruts, M., Del-Favero, J., Zhang, Y., Tissir, F. et al. (1999) Genome Res. 9: 1059-1073.
32. Wu, J., Maehara, T., Shimokawa, T., Yamamoto, S., Harada, C. et al. (2002) Plant Cell 14: 525-535.
33. Wu, J., Mizuno, H., Hayashi-Tsugane, M., Ito, Y., Chiden, Y. et al. (2003) Plant J. 36: 720-730.
34. Wu, J., Yamagata, H., Hayashi-Tsugane, M., Hijishita, S., Fujisawa, M. et al. (2004) Plant Cell 16: 967-976.
35. Yano, M. and Sasaki, T. (1997) Plant Mol. Biol. 35: 145-153.
36. Yano, M., Katayose, Y., Ashikari, M., Yamanouchi, U., Monna, L. et al. (2000) Plant Cell 12: 2473-248.
37. Yano, M., Lin, H.X., Takeuchi, Y., Nonoue, Y., Ando, T., et al. (2003) In Rice Science: Innovations and Impact for Livelihood. Edited by Mew, T.W., Brar, D.S., Peng, S., Dawe, D. and Hardy, B. pp. 257-263. IRRI.
38. Zhang, Y., Huang, Y., Zhang, L., Li, Y., Lu, T. et al. (2004) Nucleic Acids Res. 32: 2023-2030.