-
1
-
-
0001195354
-
Structure of a ribonucleic acid
-
Holley, R. W., Apgar, J., Everett, G. A., Madison, J. T., Marquisee, M., Merrill, S. H., Penswick, J. R., and Zamir, A. (1965) Structure of a ribonucleic acid, Science 147, 1462-1465.
-
(1965)
Science
, vol.147
, pp. 1462-1465
-
-
Holley, R.W.1
Apgar, J.2
Everett, G.A.3
Madison, J.T.4
Marquisee, M.5
Merrill, S.H.6
Penswick, J.R.7
Zamir, A.8
-
2
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. (1998) Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Res. 26, 148-153.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
3
-
-
0018637808
-
The primary transcription product of a silkworm alanine tRNA gene: Identification of in vitro sites of initiation, termination and processing
-
Hagenbuchle, O., Larson, D., Hall, G. I., and Sprague, K. U. (1979) The primary transcription product of a silkworm alanine tRNA gene: identification of in vitro sites of initiation, termination and processing, Cell 18, 1217-1229.
-
(1979)
Cell
, vol.18
, pp. 1217-1229
-
-
Hagenbuchle, O.1
Larson, D.2
Hall, G.I.3
Sprague, K.U.4
-
4
-
-
0011895723
-
Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA
-
Auxilien, S., Crain, P. F., Trewyn, R. W., and Grosjean, H. (1996) Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA, J. Mol. Biol. 262, 437-458.
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 437-458
-
-
Auxilien, S.1
Crain, P.F.2
Trewyn, R.W.3
Grosjean, H.4
-
5
-
-
0032541331
-
Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2
-
Gerber, A., Grosjean, H., Melcher, T., and Keller, W. (1998) Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2, EMBO J. 17, 4780-4789.
-
(1998)
EMBO J.
, vol.17
, pp. 4780-4789
-
-
Gerber, A.1
Grosjean, H.2
Melcher, T.3
Keller, W.4
-
6
-
-
0033527628
-
An adenosine deaminase that generates inosine at the wobble position of tRNAs
-
Gerber, A. P., and Keller, W. (1999) An adenosine deaminase that generates inosine at the wobble position of tRNAs, Science 286, 1146-1149.
-
(1999)
Science
, vol.286
, pp. 1146-1149
-
-
Gerber, A.P.1
Keller, W.2
-
7
-
-
0037099742
-
tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli
-
Wolf, J., Gerber, A. P., and Keller, W. (2002) tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli, EMBO J. 21, 3841-3851.
-
(2002)
EMBO J.
, vol.21
, pp. 3841-3851
-
-
Wolf, J.1
Gerber, A.P.2
Keller, W.3
-
8
-
-
0024233053
-
An unwinding activity that covalently modifies its double-stranded RNA substrate
-
Bass, B. L., and Weintraub, H. (1988) An unwinding activity that covalently modifies its double-stranded RNA substrate, Cell 55, 1089-1098.
-
(1988)
Cell
, vol.55
, pp. 1089-1098
-
-
Bass, B.L.1
Weintraub, H.2
-
9
-
-
0004039284
-
-
Academic Press, New York
-
Smith, E., Austin, B., Blumenthal, K., and Nyc, J. (1975) The Enzymes, pp 293-367, Academic Press, New York.
-
(1975)
The Enzymes
, pp. 293-367
-
-
Smith, E.1
Austin, B.2
Blumenthal, K.3
Nyc, J.4
-
10
-
-
0034678025
-
Dual role for the glutamine phosphoribosylpyrophosphate amidotransferase ammonia channel. Interdomain signaling and intermediate channeling
-
Bera, A. K., Smith, J. L., and Zalkin, H. (2000) Dual role for the glutamine phosphoribosylpyrophosphate amidotransferase ammonia channel. Interdomain signaling and intermediate channeling, J. Biol. Chem. 275, 7975-7979.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 7975-7979
-
-
Bera, A.K.1
Smith, J.L.2
Zalkin, H.3
-
12
-
-
0031059866
-
Macromolecular crystallography, part A
-
(Carter, C. W., Jr., and Sweet, R. M., Eds.). Academic Press, New York
-
Otwinowski, Z., and Minor, W. (1997) Macromolecular crystallography, part A, in Methods in Enzymology (Carter, C. W., Jr., and Sweet, R. M., Eds.) pp 307-326, Academic Press, New York.
-
(1997)
Methods in Enzymology
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
13
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, No. 4 (1994) The CCP4 suite: programs for protein crystallography, Acta Crystallogr. D. Biol. Crystallogr. 50, 760-763.
-
(1994)
Acta Crystallogr. D. Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
14
-
-
3042613550
-
Likelihood-enhanced fast rotation functions
-
Storoni, L. C., McCoy, A. J., and Read, R. J. (2004) Likelihood-enhanced fast rotation functions, Acta Crystallogr., Sect. D: Biol. Crystallogr. 60, 432-438.
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 432-438
-
-
Storoni, L.C.1
McCoy, A.J.2
Read, R.J.3
-
15
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede, T., Kopp, J., Guex, N., and Peitsch, M. C. (2003) SWISS-MODEL: an automated protein homology-modeling server, Nucleic Acids Res. 31, 3381-3385.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
16
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination, Acta Crystallogr., Sect. D: Biol. Crystallogr. 54 (Pt. 5), 905-921.
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, Issue.PART 5
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
17
-
-
0005797141
-
Crystallography of biological macromolecules
-
Rossmann, M. G., and Arnold, E., Eds. Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Lamzin, V. S., Wilson, K. S., and Perrakis, A. (2001) Crystallography of biological macromolecules, in International Tables for Crystallography (Rossmann, M. G., and Arnold, E., Eds.) pp 720-722, Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(2001)
International Tables for Crystallography
, pp. 720-722
-
-
Lamzin, V.S.1
Wilson, K.S.2
Perrakis, A.3
-
18
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard (1991) Improved methods for building protein models in electron density maps and the location of errors in these models, Acta Crystallogr., Sect. A 47 (Pt. 2), 110-119.
-
(1991)
Acta Crystallogr., Sect. A
, vol.47
, Issue.PART 2
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
-
19
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
20
-
-
0028057520
-
Cytidine deaminase. The 2.3 Å crystal structure of an enzyme: Transition-state analog complex
-
Betts, L., Xiang, S., Short, S. A., Wolfenden, R., and Carter, C. W., Jr. (1994) Cytidine deaminase. The 2.3 Å crystal structure of an enzyme: transition-state analog complex, J. Mol. Biol. 235, 635-656.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 635-656
-
-
Betts, L.1
Xiang, S.2
Short, S.A.3
Wolfenden, R.4
Carter Jr., C.W.5
-
21
-
-
0038482076
-
Crystal structure of yeast cytosine deaminase. Insights into enzyme mechanism and evolution
-
Ko, T. P., Lin, J. J., Hu, C. Y., Hsu, Y. H., Wang, A. H., and Liaw, S. H. (2003) Crystal structure of yeast cytosine deaminase. Insights into enzyme mechanism and evolution, J. Biol. Chem. 278, 19111-19117.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 19111-19117
-
-
Ko, T.P.1
Lin, J.J.2
Hu, C.Y.3
Hsu, Y.H.4
Wang, A.H.5
Liaw, S.H.6
-
22
-
-
4143081742
-
Crystal structure of Bacillus subtilis guanine deaminase: The first domain-swapped structure in the cytidine deaminase superfamily
-
Liaw, S. H., Chang, Y. J., Lai, C. T., Chang, H. C., and Chang, G. G. (2004) Crystal structure of Bacillus subtilis guanine deaminase: the first domain-swapped structure in the cytidine deaminase superfamily, J. Biol. Chem. 279, 35479-35485.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 35479-35485
-
-
Liaw, S.H.1
Chang, Y.J.2
Lai, C.T.3
Chang, H.C.4
Chang, G.G.5
-
23
-
-
0345270035
-
Messenger RNA editing in mammals: New members of the APOBEC family seeking roles in the family business
-
Wedekind, J. E., Dance, G. S., Sowden, M. P., and Smith, H. C. (2003) Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business, Trends Genet. 19, 207-216.
-
(2003)
Trends Genet.
, vol.19
, pp. 207-216
-
-
Wedekind, J.E.1
Dance, G.S.2
Sowden, M.P.3
Smith, H.C.4
-
24
-
-
0036703330
-
RNA editing by adenosine deaminases generates RNA and protein diversity
-
Schaub, M., and Keller, W. (2002) RNA editing by adenosine deaminases generates RNA and protein diversity, Biochimie 84, 791-803.
-
(2002)
Biochimie
, vol.84
, pp. 791-803
-
-
Schaub, M.1
Keller, W.2
-
25
-
-
0014525305
-
On the rate-determining step in the action of adenosine deaminase
-
Wolfenden, R. (1969) On the rate-determining step in the action of adenosine deaminase, Biochemistry 8, 2409-2412.
-
(1969)
Biochemistry
, vol.8
, pp. 2409-2412
-
-
Wolfenden, R.1
-
26
-
-
0032477818
-
Complementary truncations of a hydrogen bond to ribose involved in transition-state stabilization by cytidine deaminase
-
Carlow, D. C., Short, S. A., and Wolfenden, R. (1998) Complementary truncations of a hydrogen bond to ribose involved in transition-state stabilization by cytidine deaminase, Biochemistry 37, 1199-1203.
-
(1998)
Biochemistry
, vol.37
, pp. 1199-1203
-
-
Carlow, D.C.1
Short, S.A.2
Wolfenden, R.3
-
27
-
-
0033982815
-
The properties of a tRNA-specific adenosine deaminase from Drosophila melanogaster support an evolutionary link between pre-mRNA editing and tRNA modification
-
Keegan, L. P., Gerber, A. P., Brindle, J., Leemans, R., Gallo, A., Keller, W., and O'Connell, M. A. (2000) The properties of a tRNA-specific adenosine deaminase from Drosophila melanogaster support an evolutionary link between pre-mRNA editing and tRNA modification, Mol. Cell. Biol. 20, 825-833.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 825-833
-
-
Keegan, L.P.1
Gerber, A.P.2
Brindle, J.3
Leemans, R.4
Gallo, A.5
Keller, W.6
O'Connell, M.A.7
-
28
-
-
0026766983
-
Functional contacts of a transfer RNA synthetase with 2′-hydroxyl groups in the RNA minor groove
-
Musier-Forsyth, K., and Schimmel, P. (1992) Functional contacts of a transfer RNA synthetase with 2′-hydroxyl groups in the RNA minor groove, Nature 357, 513-515.
-
(1992)
Nature
, vol.357
, pp. 513-515
-
-
Musier-Forsyth, K.1
Schimmel, P.2
-
29
-
-
0043133654
-
The 1.14 Å crystal structure of yeast cytosine deaminase: Evolution of nucleotide salvage enzymes and implications for genetic chemotherapy
-
Ireton, G. C., Black, M. E., and Stoddard, B. L. (2003) The 1.14 Å crystal structure of yeast cytosine deaminase: evolution of nucleotide salvage enzymes and implications for genetic chemotherapy, Structure (London) 11, 961-972.
-
(2003)
Structure (London)
, vol.11
, pp. 961-972
-
-
Ireton, G.C.1
Black, M.E.2
Stoddard, B.L.3
-
30
-
-
2542542827
-
The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1
-
Xie, K., Sowden, M. P., Dance, G. S., Torelli, A. T., Smith, H. C., and Wedekind, J. E. (2004) The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1, Proc. Natl. Acad. Sci. U.S.A. 101, 8114-8119.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 8114-8119
-
-
Xie, K.1
Sowden, M.P.2
Dance, G.S.3
Torelli, A.T.4
Smith, H.C.5
Wedekind, J.E.6
-
31
-
-
0037176913
-
Crystal structure of the tetrameric cytidine deaminase from Bacillus subtilis at 2.0 Å resolution
-
Johansson, E., Mejlhede, N., Neuhard, J., and Larsen, S. (2002) Crystal structure of the tetrameric cytidine deaminase from Bacillus subtilis at 2.0 Å resolution, Biochemistry 41, 2563-2570.
-
(2002)
Biochemistry
, vol.41
, pp. 2563-2570
-
-
Johansson, E.1
Mejlhede, N.2
Neuhard, J.3
Larsen, S.4
-
32
-
-
0026434561
-
Atomic structure of adenosine deaminase complexed with a transition-state analog: Understanding catalysis and immunodeficiency mutations
-
Wilson, D. K., Rudolph, F. B., and Quiocho, F. A. (1991) Atomic structure of adenosine deaminase complexed with a transition-state analog: understanding catalysis and immunodeficiency mutations, Science 252, 1278-1284.
-
(1991)
Science
, vol.252
, pp. 1278-1284
-
-
Wilson, D.K.1
Rudolph, F.B.2
Quiocho, F.A.3
-
33
-
-
0347129832
-
A highly potent non-nucleoside adenosine deaminase inhibitor: Efficient drug discovery by intentional lead hybridization
-
Terasaka, T., Kinoshita, T., Kuno, M., and Nakanishi, I. (2004) A highly potent non-nucleoside adenosine deaminase inhibitor: efficient drug discovery by intentional lead hybridization, J. Am. Chem. Soc. 126, 34-35.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 34-35
-
-
Terasaka, T.1
Kinoshita, T.2
Kuno, M.3
Nakanishi, I.4
-
34
-
-
0015929511
-
Three-dimensional structure of yeast phenylalanine transfer RNA: Folding of the polynucleotide chain
-
Kim, S. H., Quigley, G. J., Suddath, F. L., McPherson, A., Sneden, D., Kim, J. J., Weinzierl, J., and Rich, A. (1973) Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain, Science 179, 285-288.
-
(1973)
Science
, vol.179
, pp. 285-288
-
-
Kim, S.H.1
Quigley, G.J.2
Suddath, F.L.3
McPherson, A.4
Sneden, D.5
Kim, J.J.6
Weinzierl, J.7
Rich, A.8
-
35
-
-
0033862354
-
The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: A classic structure revisited
-
Shi, H., and Moore, P. B. (2000) The crystal structure of yeast phenylalanine tRNA at 1.93 Å resolution: a classic structure revisited, RNA 6, 1091-1105.
-
(2000)
RNA
, vol.6
, pp. 1091-1105
-
-
Shi, H.1
Moore, P.B.2
-
36
-
-
0003458038
-
tRNA - A treasury of stereochemical information
-
(Carter, C. R., Ed.), Springer-Verlag, New York
-
Saenger, W. (1984) tRNA-a treasury of stereochemical information, in Principles of Nucleic Acid Structure (Carter, C. R., Ed.) pp 331-349, Springer-Verlag, New York.
-
(1984)
Principles of Nucleic Acid Structure
, pp. 331-349
-
-
Saenger, W.1
-
37
-
-
24644493257
-
Biochemical and structural studies of A-to-I editing by tRNA:A34 Deaminases at the wobble position of transfer RNA
-
Elias, Y., and Huang, R. H. (2005) Biochemical and Structural Studies of A-to-I Editing by tRNA:A34 Deaminases at the Wobble Position of Transfer RNA, Biochemistry 44, 12057-12065.
-
(2005)
Biochemistry
, vol.44
, pp. 12057-12065
-
-
Elias, Y.1
Huang, R.H.2
-
38
-
-
0030887895
-
The structure of the cytidine deaminase-product complex provides evidence for efficient proton transfer and ground-state destabilization
-
Xiang, S., Short, S. A., Wolfenden, R., and Carter, C. W., Jr. (1997) The structure of the cytidine deaminase-product complex provides evidence for efficient proton transfer and ground-state destabilization, Biochemistry 36, 4768-4774.
-
(1997)
Biochemistry
, vol.36
, pp. 4768-4774
-
-
Xiang, S.1
Short, S.A.2
Wolfenden, R.3
Carter Jr., C.W.4
-
39
-
-
18144392611
-
Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus
-
Kuratani, M., Ishii, R., Bessho, Y., Fukunaga, R., Sengoku, T., Shirouzu, M., Sekine, S., and Yokoyama, S. (2005) Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus, J. Biol. Chem. 280, 16002-16008.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 16002-16008
-
-
Kuratani, M.1
Ishii, R.2
Bessho, Y.3
Fukunaga, R.4
Sengoku, T.5
Shirouzu, M.6
Sekine, S.7
Yokoyama, S.8
-
40
-
-
32244445417
-
Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA
-
Losey, H. C., Ruthenburgh, A. J., and Verdine, G. L. (2006) Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA, Nat. Struc. Mol. Biol. 13, 153-159.
-
(2006)
Nat. Struc. Mol. Biol.
, vol.13
, pp. 153-159
-
-
Losey, H.C.1
Ruthenburgh, A.J.2
Verdine, G.L.3
|