A parallel proteomic and metabolomic analysis of the hydrogen peroxide- and Sty1p-dependent stress response in Schizosaccharomyces pombe

Proteomics

Volumn 6, Issue 9, 2006, Pages 2772-2796

  Weeks, Mark E ^a   Sinclair, John ^a   Butt, Amna ^b   Chung, Yuen Li ^c   Worthington, Jessica L ^b   Wilkinson, Caroline R M ^b   Griffiths, John ^c   Jones, Nic ^b   Waterfield, Michael D ^a   Timms, John F ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b CHRISTIE HOSPITAL   (United Kingdom)

^c ST GEORGE'S UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Hydrogen peroxide; Metabolomics; Redox stress

Indexed keywords

FLUORESCENT DYE; HYDROGEN PEROXIDE; MESSENGER RNA; MITOGEN ACTIVATED PROTEIN KINASE P38; STRESS ACTIVATED PROTEIN KINASE; STY1P ENZYME; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; GENOME ANALYSIS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; METABOLOMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; PROTEOMICS; REGULATORY MECHANISM; SCHIZOSACCHAROMYCES POMBE; SIGNAL TRANSDUCTION;

ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE DELETION; GENE EXPRESSION REGULATION; HYDROGEN PEROXIDE; MASS SPECTROMETRY; MITOGEN-ACTIVATED PROTEIN KINASE KINASES; MITOGEN-ACTIVATED PROTEIN KINASES; OXIDANTS; OXIDATIVE STRESS; PROTEIN ISOFORMS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOMICS; RNA, MESSENGER; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS;

SCHIZOSACCHAROMYCES POMBE;

EID: 33646743554     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200500741     Document Type: Article

References (57)

1. Chen, D., Toone, W. M., Mata, J., Lyne, R. et al., Mol. Biol. Cell 2003, 14, 214-229.
2. Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O. et al., Mol. Biol. Cell 2000, 11, 4241-4257.
3. Causton, H. C., Ren, B., Koh, S. S., Harbison, C. T. et al., Mol. Biol. Cell 2001, 12, 323-337.
4. Weeks, M. E., James, D. C., Robinson, G. K., Smales, C. M., Proteomics 2004, 4, 123-135.
5. Madeo, F., Engelhardt, S., Herker, E., Lehmann, N. et al., Curr. Genet. 2002, 41, 208-216.
6. Wood, V., Gwilliam, R., Rajandream, M. A., Lyne, M. et al., Nature 2002, 415, 871-880.
7. Sunnerhagen, P., Curr. Genet. 2002, 42, 73-84.
8. Degols, G., Russell, P., Mol. Cell Biol. 1997, 17, 3356-3363.
9. Degols, G., Shiozaki, K., Russell, P., Mol. Cell. Biol. 1996, 16, 2870-2877.
10. Shiozaki, K., Russell, P., Nature 1995, 378, 739-743.
11. Wilkinson, M. G., Samuels, M., Takeda, T., Toone, W. M. et al., Genes Dev. 1996, 10, 2289-2301.
12. Gaits, F., Degols, G., Shiozaki, K., Russell, P., Genes Dev. 1998, 12, 1464-1473.
13. Shiozaki, K., Russell, P., Genes Dev. 1996, 10, 2276-2288.
14. Takeda, T., Toda, T., Kominami, K., Kohnosu, A. et al., Embo. J. 1995, 14, 6193-6208.
15. Jackson, A. L., Loeb, L. A., Mutat. Res. 2001, 477, 7-21.
16. Ames, B. N., Gold, L. S., Willett, W. C., Proc. Natl. Acad. Sci. USA 1995, 92, 5258-5265.
17. Olinski, R., Gackowski, D., Foksinski, M., Rozalski, R. et al., Free Radic. Biol. Med. 2002, 33, 192-200.
18. Taniyama, Y., Griendling, K. K., Hypertension 2003, 42, 1075-1081.
19. Suh, Y. A., Arnold, R. S., Lassegue, B., Shi, J. et al., Nature 1999, 401, 79-82.
20. Szatrowski, T. P., Nathan, C. F., Cancer Res. 1991, 51, 794-798.
21. Rhee, S. G., Exp. Mol. Med. 1999, 31, 53-59.
22. Behrend, L., Henderson, G., Zwacka, R. M., Biochem. Soc. Trans. 2003, 31, 1441-1444.
23. Sundaresan, M., Yu, Z. X., Ferrans, V. J., Irani, K. et al., Science 1995, 270, 296-299.
24. Gros, L., Saparbaev, M. K., Laval, J., Oncogene 2002, 21, 8905-8925.
25. Klatt, P., Lamas, S., Eur. J. Biochem. 2000, 267, 4928-4944.
26. Thomas, J. A., Poland, B., Honzatko, R., Arch. Biochem. Biophys. 1995, 319, 1-9.
27. Carmel-Harel, O., Storz, G., Annu. Rev. Microbiol. 2000, 54, 439-461.
28. Grant, C. M., Mol. Microbiol. 2001, 39, 533-541.
29. Rietsch, A., Beckwith, J., Annu. Rev. Genet. 1998, 32, 163-184.
30. Shenton, D., Grant, C. M., Biochem. J. 2003, 374, 513-519.
31. Luikenhuis, S., Perrone, G., Dawes, I. W., Grant, C. M., Mol. Biol. Cell 1998, 9, 1081-1091.
32. Viladevall, L., Serrano, R., Ruiz, A., Domenech, G. et al., J. Biol. Chem. 2004, 279, 43614-43624.
33. Rabilloud, T., Proteomics 2002, 2, 3-10.
34. Herbert, B. R., Harry, J. L., Packer, N. H., Gooley, A. A. et al., Trends Biotechnol. 2001, 19, S3-S9.
35. Gharbi, S., Gaffney, P., Yang, A., Zvelebil, M. J. et al., Mol. Cell. Proteom. 2002, 1, 91-98.
36. Tonge, R., Shaw, J., Middleton, B., Rowlinson, R. et al., Proteomics 2001, 1, 377-396.
37. Unlu, M., Morgan, M. E., Minden, J. S., Electrophoresis 1997, 18, 2071-2077.
38. Griffin, J. L., Bollard, M. E., Curr. Drug Metab. 2004, 5, 389-398.
39. Viant, M. R., Rosenblum, E. S., Tieerdema, R. S., Environ. Sci. Technol. 2003, 37, 4982-4989.
40. Moreno, S., Klar, A., Nurse, P., Methods Enzymol. 1991, 194, 795-823.
41. Schultz, M. C., Methods 1999, 17, 161-172.
42. Chan, H. L., Gharbi, S., Gaffney, P. R., Cramer, R. et al., Proteomics 2005, 5, 2908-2926.
43. Weeks, M. E., Sinclair, J., Jacob, R. J., Saxton, M. J. et al., Proteomics 2005, 5, 1669-1685.
44. Schmidt, F., Schmid, M., Jungblut, P. R., Mattow, J. et al., J. Am. Soc. Mass Spectrom. 2003, 14, 943-956.
45. Bahler, J., Wu, J. Q., Longtine, M. S., Sah, Nh. G. et al., Yeast 1998, 14, 943-951.
46. Bergmeyer, H., Methods of Enzymatic Analysis, Verlag Chemie, Germany 1974, Vol. 1, pp. 425-426.
47. Quinn, J., Findlay, V. J., Dawson, K., Millar, J. B. et al., Mol. Biol. Cell 2002, 13, 805-816.
48. Alban, A., David, S. O., Bjorkesten, L., Andersson, C., Proteomics 2003, 3, 36-44.
49. Godon, C., Lagniel, G., Lee, J., Buhler, J. M. et al., J. Biol. Chem. 1998, 273, 22480-22489.
50. Veal, E. A., Findlay, V. J., Day, A. M., Bozonet, S. M. et al., Mol. Cell 2004, 15, 129-139.
51. Wagner, E., Luche, S., Penna, L., Chevallet, M. et al., Biochem. J. 2002, 366, 777-785.
52. Rabilloud, T., Heller, M., Gasnier, F., Luche, S. et al., J. Biol. Chem. 2002, 277, 19396-19401. Epub 12002 Mar 19319.
53. Gygi, S. P., Rochon, Y., Franza, B. R., Aebersold, R., Mol. Cell Biol. 1999, 19, 1720-1730.
54. Anderson, L., Seilhamer, J., Electrophoresis 1997, 18, 533-537.
55. White, S. L., Gharbi, S., Bertani, M. F., Chan, H. L. et al., Br. J. Cancer 2004, 90, 173-181.
56. Bro, C., Regenberg, B., Lagniel, G., Labarre, J. et al., J. Biol. Chem. 2003, 278, 32141-32149.
57. Ptushkina, M., Malys, N., McCarthy, J. E., EMBO Rep. 2004, 5, 311-316.