메뉴 건너뛰기




Volumn 4, Issue 1, 2005, Pages

Reverse engineering galactose regulation in yeast through model selection

Author keywords

AIC; BIC; Bootstrap; Cp; Lasso; MDL; Model selection; Regression

Indexed keywords

GALACTOSE; SUGAR;

EID: 25644447513     PISSN: 15446115     EISSN: 15446115     Source Type: Journal    
DOI: 10.2202/1544-6115.1118     Document Type: Article
Times cited : (11)

References (33)
  • 1
    • 0030848624 scopus 로고    scopus 로고
    • A Test Case of Correlation Metric Construction of a Reaction Pathway from Measurements
    • Arkin, A., Shen, P. & Ross, J. (1997), 'A Test Case of Correlation Metric Construction of a Reaction Pathway from Measurements', Science 277, 1275-1279.
    • (1997) Science , vol.277 , pp. 1275-1279
    • Arkin, A.1    Shen, P.2    Ross, J.3
  • 2
    • 16344387892 scopus 로고    scopus 로고
    • Probabilities of spurious connections in gene networks: Application to expression time series
    • Bickel, D.R. (2005), 'Probabilities of spurious connections in gene networks: application to expression time series', Bioinformatics 21, 1121-1128.
    • (2005) Bioinformatics , vol.21 , pp. 1121-1128
    • Bickel, D.R.1
  • 3
    • 0001587464 scopus 로고
    • The Little Bootstrap and Other Methods for Dimensionality Selection in Regression: X-Fixed Prediction Error
    • Breiman, L. (1992), 'The Little Bootstrap and Other Methods for Dimensionality Selection in Regression: X-Fixed Prediction Error', J. Am. Stat. Ass. 87 (419), 738-754.
    • (1992) J. Am. Stat. Ass. , vol.87 , Issue.419 , pp. 738-754
    • Breiman, L.1
  • 4
    • 0032612220 scopus 로고    scopus 로고
    • Linear Modeling of mRNA expression levels during CNS development and injury
    • Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), World Scientific Publishing Co, Singapore
    • D'haeseleer, P., Liang, S., & Somogyi, R. (1999), 'Linear Modeling of mRNA expression levels during CNS development and injury', in: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), Pacific Symposium on Biocomputing 4. World Scientific Publishing Co, Singapore, pp. 41-52.
    • (1999) Pacific Symposium on Biocomputing , vol.4 , pp. 41-52
    • D'haeseleer, P.1    Liang, S.2    Somogyi, R.3
  • 6
    • 0037442317 scopus 로고    scopus 로고
    • The topology of the transcription regulatory network in Saccharomyces cerevisiae
    • Farkas, I., Jeong, H., Vicsek, T., Barabsi, A.-L., & Oltvai, Z.N. (2003), 'The topology of the transcription regulatory network in Saccharomyces cerevisiae', Physica A 381, 601-612.
    • (2003) Physica A , vol.381 , pp. 601-612
    • Farkas, I.1    Jeong, H.2    Vicsek, T.3    Barabsi, A.-L.4    Oltvai, Z.N.5
  • 7
    • 0033707946 scopus 로고    scopus 로고
    • Using Bayesian Networks to Analyze Expression Data
    • Friedman, N., Linial, M., Nachman, I. & Pe'er, D. (2000), 'Using Bayesian Networks to Analyze Expression Data', J. Comp. Biol. 7, 601-620.
    • (2000) J. Comp. Biol. , vol.7 , pp. 601-620
    • Friedman, N.1    Linial, M.2    Nachman, I.3    Pe'er, D.4
  • 8
    • 0038048325 scopus 로고    scopus 로고
    • Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling
    • Gardner, T.S., Bernardo, D., Lorenz, D, & Collins, J.J. (2003), 'Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling', Science 301, 102-105.
    • (2003) Science , vol.301 , pp. 102-105
    • Gardner, T.S.1    Bernardo, D.2    Lorenz, D.3    Collins, J.J.4
  • 9
    • 0442309436 scopus 로고    scopus 로고
    • The Variable Selection Problem
    • George, E.I. (2000), 'The Variable Selection Problem', J. Am. Stat. Ass. 95 (452), 1304-1308.
    • (2000) J. Am. Stat. Ass. , vol.95 , Issue.452 , pp. 1304-1308
    • George, E.I.1
  • 10
    • 0141879236 scopus 로고    scopus 로고
    • Model Selection and the Principle of Minimum Selection Length
    • Hansen, M.H. & Yu, B. (2001), 'Model Selection and the Principle of Minimum Selection Length', J. Am. Stat. Ass. 96 (454), 746-774.
    • (2001) J. Am. Stat. Ass. , vol.96 , Issue.454 , pp. 746-774
    • Hansen, M.H.1    Yu, B.2
  • 12
    • 0043130707 scopus 로고    scopus 로고
    • Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations
    • Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), World Scientific Publishing Co, Singapore
    • De Hoon, M.J.L., Imoto, S., Kobayashi, K., Ogasawara, N., & Miyano, S. (2003), 'Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations', in: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), Pacific Symposium on Biocomputing 8. World Scientific Publishing Co, Singapore, pp. 17-28.
    • (2003) Pacific Symposium on Biocomputing , vol.8 , pp. 17-28
    • De Hoon, M.J.L.1    Imoto, S.2    Kobayashi, K.3    Ogasawara, N.4    Miyano, S.5
  • 13
    • 0000660076 scopus 로고    scopus 로고
    • Discovery of Regulatory Interactions through Perturbation: Inference and Experimental Design, Pacific Symposium on Biocomputing 2000
    • Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), World Scientific Publishing Co, Singapore
    • Ideker, T.E., Thorsson, V., & Karp, R. (2000a), 'Discovery of Regulatory Interactions through Perturbation: Inference and Experimental Design, Pacific Symposium on Biocomputing 2000', in: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), Pacific Symposium on Biocomputing 5. World Scientific Publishing Co, Singapore, pp. 302-313.
    • (2000) Pacific Symposium on Biocomputing , vol.5 , pp. 302-313
    • Ideker, T.E.1    Thorsson, V.2    Karp, R.3
  • 14
    • 0034921979 scopus 로고    scopus 로고
    • Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data
    • Ideker, T.E., Thorsson, V., Siegel, A.F., & Hood, L.E. (2000b), 'Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data', J. Comp. Biol. 7, 805-817.
    • (2000) J. Comp. Biol. , vol.7 , pp. 805-817
    • Ideker, T.E.1    Thorsson, V.2    Siegel, A.F.3    Hood, L.E.4
  • 16
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
    • Jong, H.D. (2002), 'Modeling and Simulation of Genetic Regulatory Systems: A Literature Review', J Comp Biol 9(1), 67-103.
    • (2002) J Comp Biol , vol.9 , Issue.1 , pp. 67-103
    • Jong, H.D.1
  • 21
    • 10244230983 scopus 로고    scopus 로고
    • Reconstruction of gene networks using Bayesian learning and manipulation experiments
    • Pournara J. & Wernisch, L. (2004), 'Reconstruction of gene networks using Bayesian learning and manipulation experiments', Bioinformatics 20, 2934-2942.
    • (2004) Bioinformatics , vol.20 , pp. 2934-2942
    • Pournara, J.1    Wernisch, L.2
  • 23
    • 15944364151 scopus 로고    scopus 로고
    • An Empirical Bayes Approach to Inferring Large-Scale Gene Association Networks
    • Schäfer J. & Strimmer, K. (2005), 'An Empirical Bayes Approach to Inferring Large-Scale Gene Association Networks', Bioinformatics 21, 754-764.
    • (2005) Bioinformatics , vol.21 , pp. 754-764
    • Schäfer, J.1    Strimmer, K.2
  • 24
    • 0642336882 scopus 로고    scopus 로고
    • An asymptotic theory for linear model selection
    • Shao, J. (1997), 'An asymptotic theory for linear model selection', Statistica Sinica 7, 221-264.
    • (1997) Statistica Sinica , vol.7 , pp. 221-264
    • Shao, J.1
  • 26
    • 85194972808 scopus 로고    scopus 로고
    • Regression Shrinkage and Selection via the Lasso
    • Tibshirani, R. (1996), 'Regression Shrinkage and Selection via the Lasso', J. R. Stat. Soc. B 58 (1), 267-288.
    • (1996) J. R. Stat. Soc. B , vol.58 , Issue.1 , pp. 267-288
    • Tibshirani, R.1
  • 27
    • 0034791625 scopus 로고    scopus 로고
    • Modeling genetic regulatory dynamics in neural development
    • Wahde, M. & Hertz, J. (2001), 'Modeling genetic regulatory dynamics in neural development', J. Comp. Biol. 8(4), 429-442.
    • (2001) J. Comp. Biol. , vol.8 , Issue.4 , pp. 429-442
    • Wahde, M.1    Hertz, J.2
  • 28
    • 0032617396 scopus 로고    scopus 로고
    • Modeling regulatory networks with weight matrices
    • Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), World Scientific Publishing Co, Singapore
    • Weaver, D.C., Workman, C.T. & Stormo, G.D. (1999), 'Modeling regulatory networks with weight matrices', in: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), Pacific Symposium on Biocomputing 4. World Scientific Publishing Co, Singapore, pp. 112-123.
    • (1999) Pacific Symposium on Biocomputing , vol.4 , pp. 112-123
    • Weaver, D.C.1    Workman, C.T.2    Stormo, G.D.3
  • 29
    • 0031630211 scopus 로고    scopus 로고
    • Genomic regulation modeled as a network with basins of attraction
    • Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), World Scientific Publishing Co, Singapore
    • Wuensche, A. (1998), 'Genomic regulation modeled as a network with basins of attraction', in: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), Pacific Symposium on Biocomputing 3. World Scientific Publishing Co, Singapore, pp. 89-102.
    • (1998) Pacific Symposium on Biocomputing , vol.3 , pp. 89-102
    • Wuensche, A.1
  • 30
    • 0037197936 scopus 로고    scopus 로고
    • Reverse engineering gene networks using singular value decomposition and robust regression
    • Yeung, M.K.S., Tegnér, J. & Collins, J.J. (2002), 'Reverse engineering gene networks using singular value decomposition and robust regression', Proc. Natl. Acad. Sci. USA 99, 6163-6168.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6163-6168
    • Yeung, M.K.S.1    Tegnér, J.2    Collins, J.J.3
  • 31
    • 0036358442 scopus 로고    scopus 로고
    • Discovery of Causal Relationships in a Gene-regulation Pathway from a Mixture of Experimental and Observational DNA Microarray Data
    • Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), World Scientific Publishing Co, Singapore
    • Yoo, C., Thorsson, V. & Cooper, G. (2002). 'Discovery of Causal Relationships in a Gene-regulation Pathway from a Mixture of Experimental and Observational DNA Microarray Data', in: Altman, R.B., Dunker, A.K., Hunter, L., Klein, T.E., and Lauderdaule, K. (Eds.), Pacific Symposium on Biocomputing 7. World Scientific Publishing Co, Singapore, pp. 498-509.
    • (2002) Pacific Symposium on Biocomputing , vol.7 , pp. 498-509
    • Yoo, C.1    Thorsson, V.2    Cooper, G.3
  • 32
    • 12344259602 scopus 로고    scopus 로고
    • Advances to Bayesian network inference for generating causal networks from observational biological data
    • Yu, J., Smith, A., Wang, A.P., Hartemink, A.J. & Jarvis, E.D. (2004), 'Advances to Bayesian network inference for generating causal networks from observational biological data', Bioinformatics 20, 3594-3603.
    • (2004) Bioinformatics , vol.20 , pp. 3594-3603
    • Yu, J.1    Smith, A.2    Wang, A.P.3    Hartemink, A.J.4    Jarvis, E.D.5
  • 33
    • 0030729488 scopus 로고    scopus 로고
    • The cysteine-peptidase bleomycin hydrolase is a member of the galactose regulon in yeast
    • Zheng, W., Xu, H.E. & Johnston, S.A. (1997), 'The cysteine-peptidase bleomycin hydrolase is a member of the galactose regulon in yeast' J. Biol. Chem. 272 (48) 30350-30355.
    • (1997) J. Biol. Chem. , vol.272 , Issue.48 , pp. 30350-30355
    • Zheng, W.1    Xu, H.E.2    Johnston, S.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.