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Volumn 147, Issue 2, 2006, Pages 163-176

Impact of intestinal colonization and invasion on the Entamoeba histolytica transcriptome

Author keywords

Computational biology; E. histolytica; Entamoeba parasitology; Gene expression profiling; Oligonucleotide array sequence analysis; Protozoan metabolism

Indexed keywords

CALCIUM BINDING PROTEIN; CYSTEINE PROTEINASE; DNA; GUANOSINE TRIPHOSPHATASE ACTIVATING PROTEIN; LECTIN; MESSENGER RNA; PROTOZOAL PROTEIN; RHO GUANINE NUCLEOTIDE BINDING PROTEIN; TRANSCRIPTOME; TRIACYLGLYCEROL LIPASE;

EID: 33646529123     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2006.02.007     Document Type: Article
Times cited : (155)

References (43)
  • 1
    • 0029068423 scopus 로고
    • Direct evidence for secondary loss of mitochondria in Entamoeba histolytica
    • Clark C.G., and Roger A.J. Direct evidence for secondary loss of mitochondria in Entamoeba histolytica. Proc Natl Acad Sci U S A 92 (1995) 6518-6521
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 6518-6521
    • Clark, C.G.1    Roger, A.J.2
  • 2
    • 0033710968 scopus 로고    scopus 로고
    • Early lateral transfer of genes encoding malic enzyme, acetyl-CoA synthetase and alcohol dehydrogenases from anaerobic prokaryotes to Entamoeba histolytica
    • Field J., Rosenthal B., and Samuelson J. Early lateral transfer of genes encoding malic enzyme, acetyl-CoA synthetase and alcohol dehydrogenases from anaerobic prokaryotes to Entamoeba histolytica. Mol Microbiol 38 (2000) 446-455
    • (2000) Mol Microbiol , vol.38 , pp. 446-455
    • Field, J.1    Rosenthal, B.2    Samuelson, J.3
  • 3
    • 14544294428 scopus 로고    scopus 로고
    • The genome of the protist parasite Entamoeba histolytica
    • Loftus B., Anderson I., Davies R., Alsmark U.C., Samuelson J., et al. The genome of the protist parasite Entamoeba histolytica. Nature 433 (2005) 865-868
    • (2005) Nature , vol.433 , pp. 865-868
    • Loftus, B.1    Anderson, I.2    Davies, R.3    Alsmark, U.C.4    Samuelson, J.5
  • 4
    • 0037460789 scopus 로고    scopus 로고
    • Amoebiasis
    • Stanley Jr. S.L. Amoebiasis. Lancet 361 (2003) 1025-1034
    • (2003) Lancet , vol.361 , pp. 1025-1034
    • Stanley Jr., S.L.1
  • 5
    • 0036405392 scopus 로고    scopus 로고
    • The bittersweet interface of parasite and host: lectin-carbohydrate interactions during human invasion by the parasite Entamoeba histolytica
    • Petri Jr. W.A., Haque R., and Mann B.J. The bittersweet interface of parasite and host: lectin-carbohydrate interactions during human invasion by the parasite Entamoeba histolytica. Annu Rev Microbiol 56 (2002) 39-64
    • (2002) Annu Rev Microbiol , vol.56 , pp. 39-64
    • Petri Jr., W.A.1    Haque, R.2    Mann, B.J.3
  • 6
    • 0017846267 scopus 로고
    • A new medium for axenic cultivation of Entamoeba histolytica and other Entamoeba
    • Diamond L.S., Harlow D.R., and Cunnick C. A new medium for axenic cultivation of Entamoeba histolytica and other Entamoeba. Trans R Soc Trop Med Hyg 72 (1978) 431-432
    • (1978) Trans R Soc Trop Med Hyg , vol.72 , pp. 431-432
    • Diamond, L.S.1    Harlow, D.R.2    Cunnick, C.3
  • 7
    • 0037108362 scopus 로고    scopus 로고
    • The mouse model of amebic colitis reveals mouse strain susceptibility to infection and exacerbation of disease by CD4+ T cells
    • Houpt E.R., Glembocki D.J., Obrig T.G., Moskaluk C.A., Lockhart L.A., et al. The mouse model of amebic colitis reveals mouse strain susceptibility to infection and exacerbation of disease by CD4+ T cells. J Immunol 169 (2002) 4496-4503
    • (2002) J Immunol , vol.169 , pp. 4496-4503
    • Houpt, E.R.1    Glembocki, D.J.2    Obrig, T.G.3    Moskaluk, C.A.4    Lockhart, L.A.5
  • 8
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
    • Brazma A., Hingamp P., Quackenbush J., Sherlock G., Spellman P., et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29 (2001) 365-371
    • (2001) Nat Genet , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3    Sherlock, G.4    Spellman, P.5
  • 9
    • 33646511351 scopus 로고    scopus 로고
    • Wu Z, Irizarry R, Gentleman R, Murillo F, Spencer F. A model based background adjustment for oligonucleotide expression arrays. Technical report, 2003, John Hopkins University, Department of Biostatistics Working Papers, Baltimore, MD, 2004.
  • 10
    • 0036278859 scopus 로고    scopus 로고
    • Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream
    • Ginzinger D.G. Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. Exp Hematol 30 (2002) 503-512
    • (2002) Exp Hematol , vol.30 , pp. 503-512
    • Ginzinger, D.G.1
  • 11
    • 0037129827 scopus 로고    scopus 로고
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002;3 [RESEARCH0034].
  • 12
    • 0038482128 scopus 로고    scopus 로고
    • The intestinal protozoan parasite Entamoeba histolytica contains 20 cysteine protease genes, of which only a small subset is expressed during in vitro cultivation
    • Bruchhaus I., Loftus B.J., Hall N., and Tannich E. The intestinal protozoan parasite Entamoeba histolytica contains 20 cysteine protease genes, of which only a small subset is expressed during in vitro cultivation. Eukaryot Cell 2 (2003) 501-509
    • (2003) Eukaryot Cell , vol.2 , pp. 501-509
    • Bruchhaus, I.1    Loftus, B.J.2    Hall, N.3    Tannich, E.4
  • 13
    • 0142180049 scopus 로고    scopus 로고
    • Identification and characterization of two isoenzymes of methionine gamma-lyase from Entamoeba histolytica: a key enzyme of sulfur-amino acid degradation in an anaerobic parasitic protist that lacks forward and reverse trans-sulfuration pathways
    • Tokoro M., Asai T., Kobayashi S., Takeuchi T., and Nozaki T. Identification and characterization of two isoenzymes of methionine gamma-lyase from Entamoeba histolytica: a key enzyme of sulfur-amino acid degradation in an anaerobic parasitic protist that lacks forward and reverse trans-sulfuration pathways. J Biol Chem 278 (2003) 42717-42727
    • (2003) J Biol Chem , vol.278 , pp. 42717-42727
    • Tokoro, M.1    Asai, T.2    Kobayashi, S.3    Takeuchi, T.4    Nozaki, T.5
  • 14
    • 26844478710 scopus 로고    scopus 로고
    • Sulfur-containing amino acid metabolism in parasitic protozoa
    • Baker J., Muller R., and Rollinson D. (Eds), Academic Press
    • Nozaki T., Ali V., and Tokoro M. Sulfur-containing amino acid metabolism in parasitic protozoa. In: Baker J., Muller R., and Rollinson D. (Eds). Advances in Parasitology (2005), Academic Press 1-100
    • (2005) Advances in Parasitology , pp. 1-100
    • Nozaki, T.1    Ali, V.2    Tokoro, M.3
  • 15
    • 0037329339 scopus 로고    scopus 로고
    • Iron-dependent hydrogenases of Entamoeba histolytica and Giardia lamblia: activity of the recombinant entamoebic enzyme and evidence for lateral gene transfer
    • Nixon J.E., Field J., McArthur A.G., Sogin M.L., Yarlett N., et al. Iron-dependent hydrogenases of Entamoeba histolytica and Giardia lamblia: activity of the recombinant entamoebic enzyme and evidence for lateral gene transfer. Biol Bull 204 (2003) 1-9
    • (2003) Biol Bull , vol.204 , pp. 1-9
    • Nixon, J.E.1    Field, J.2    McArthur, A.G.3    Sogin, M.L.4    Yarlett, N.5
  • 16
    • 0031007112 scopus 로고    scopus 로고
    • Evidence for the bacterial origin of genes encoding fermentation enzymes of the amitochondriate protozoan parasite Entamoeba histolytica
    • Rosenthal B., Mai Z., Caplivski D., Ghosh S., de la Vega H., et al. Evidence for the bacterial origin of genes encoding fermentation enzymes of the amitochondriate protozoan parasite Entamoeba histolytica. J Bacteriol 179 (1997) 3736-3745
    • (1997) J Bacteriol , vol.179 , pp. 3736-3745
    • Rosenthal, B.1    Mai, Z.2    Caplivski, D.3    Ghosh, S.4    de la Vega, H.5
  • 17
    • 0036090957 scopus 로고    scopus 로고
    • Differential gene expression in Entamoeba histolytica isolated from amoebic liver abscess
    • Bruchhaus I., Roeder T., Lotter H., Schwerdtfeger M., and Tannich E. Differential gene expression in Entamoeba histolytica isolated from amoebic liver abscess. Mol Microbiol 44 (2002) 1063-1072
    • (2002) Mol Microbiol , vol.44 , pp. 1063-1072
    • Bruchhaus, I.1    Roeder, T.2    Lotter, H.3    Schwerdtfeger, M.4    Tannich, E.5
  • 18
    • 1942490139 scopus 로고    scopus 로고
    • An intestinal parasitic protist, Entamoeba histolytica, possesses a non-redundant nitrogen fixation-like system for iron-sulfur cluster assembly under anaerobic conditions
    • Ali V., Shigeta Y., Tokumoto U., Takahashi Y., and Nozaki T. An intestinal parasitic protist, Entamoeba histolytica, possesses a non-redundant nitrogen fixation-like system for iron-sulfur cluster assembly under anaerobic conditions. J Biol Chem 279 (2004) 16863-16874
    • (2004) J Biol Chem , vol.279 , pp. 16863-16874
    • Ali, V.1    Shigeta, Y.2    Tokumoto, U.3    Takahashi, Y.4    Nozaki, T.5
  • 19
    • 14644406240 scopus 로고    scopus 로고
    • Transcriptional regulation of a hybrid cluster (prismane) protein
    • Filenko N.A., Browning D.F., and Cole J.A. Transcriptional regulation of a hybrid cluster (prismane) protein. Biochem Soc Trans 33 (2005) 195-197
    • (2005) Biochem Soc Trans , vol.33 , pp. 195-197
    • Filenko, N.A.1    Browning, D.F.2    Cole, J.A.3
  • 20
    • 0001187799 scopus 로고    scopus 로고
    • The hybrid-cluster protein ('prismane protein') from Escherichia coli. Characterization of the hybrid-cluster protein, redox properties of the [2Fe-2S] and [4Fe-2S-2O] clusters and identification of an associated NADH oxidoreductase containing FAD and [2Fe-2S]
    • van den Berg W.A., Hagen W.R., and van Dongen W.M. The hybrid-cluster protein ('prismane protein') from Escherichia coli. Characterization of the hybrid-cluster protein, redox properties of the [2Fe-2S] and [4Fe-2S-2O] clusters and identification of an associated NADH oxidoreductase containing FAD and [2Fe-2S]. Eur J Biochem 267 (2000) 666-676
    • (2000) Eur J Biochem , vol.267 , pp. 666-676
    • van den Berg, W.A.1    Hagen, W.R.2    van Dongen, W.M.3
  • 22
    • 0031465651 scopus 로고    scopus 로고
    • Involvement of superoxide dismutase and pyruvate:ferredoxin oxidoreductase in mechanisms of metronidazole resistance in Entamoeba histolytica
    • Samarawickrema N.A., Brown D.M., Upcroft J.A., Thammapalerd N., and Upcroft P. Involvement of superoxide dismutase and pyruvate:ferredoxin oxidoreductase in mechanisms of metronidazole resistance in Entamoeba histolytica. J Antimicrob Chemother 40 (1997) 833-840
    • (1997) J Antimicrob Chemother , vol.40 , pp. 833-840
    • Samarawickrema, N.A.1    Brown, D.M.2    Upcroft, J.A.3    Thammapalerd, N.4    Upcroft, P.5
  • 23
    • 0032707971 scopus 로고    scopus 로고
    • Molecular basis of defence against oxidative stress in Entamoeba histolytica and Giardia lamblia
    • Tekwani B.L., and Mehlotra R.K. Molecular basis of defence against oxidative stress in Entamoeba histolytica and Giardia lamblia. Microbes Infect 1 (1999) 385-394
    • (1999) Microbes Infect , vol.1 , pp. 385-394
    • Tekwani, B.L.1    Mehlotra, R.K.2
  • 24
    • 0028054245 scopus 로고
    • Induction of the iron-containing superoxide dismutase in Entamoeba histolytica by a superoxide anion-generating system or by iron chelation
    • Bruchhaus I., and Tannich E. Induction of the iron-containing superoxide dismutase in Entamoeba histolytica by a superoxide anion-generating system or by iron chelation. Mol Biochem Parasitol 67 (1994) 281-288
    • (1994) Mol Biochem Parasitol , vol.67 , pp. 281-288
    • Bruchhaus, I.1    Tannich, E.2
  • 25
    • 17144430973 scopus 로고    scopus 로고
    • Glycolysis in Entamoeba histolytica. Biochemical characterization of recombinant glycolytic enzymes and flux control analysis
    • Saavedra E., Encalada R., Pineda E., Jasso-Chavez R., and Moreno-Sanchez R. Glycolysis in Entamoeba histolytica. Biochemical characterization of recombinant glycolytic enzymes and flux control analysis. FEBS J 272 (2005) 1767-1783
    • (2005) FEBS J , vol.272 , pp. 1767-1783
    • Saavedra, E.1    Encalada, R.2    Pineda, E.3    Jasso-Chavez, R.4    Moreno-Sanchez, R.5
  • 26
    • 0032007547 scopus 로고    scopus 로고
    • Cloning and expression of the gene for the active PPi-dependent phosphofructokinase of Entamoeba histolytica
    • Deng Z., Huang M., Singh K., Albach R.A., Latshaw S.P., et al. Cloning and expression of the gene for the active PPi-dependent phosphofructokinase of Entamoeba histolytica. Biochem J 329 (1998) 659-664
    • (1998) Biochem J , vol.329 , pp. 659-664
    • Deng, Z.1    Huang, M.2    Singh, K.3    Albach, R.A.4    Latshaw, S.P.5
  • 27
    • 0035827580 scopus 로고    scopus 로고
    • The two phosphofructokinase gene products of Entamoeba histolytica
    • Chi A.S., Deng Z., Albach R.A., and Kemp R.G. The two phosphofructokinase gene products of Entamoeba histolytica. J Biol Chem 276 (2001) 19974-19981
    • (2001) J Biol Chem , vol.276 , pp. 19974-19981
    • Chi, A.S.1    Deng, Z.2    Albach, R.A.3    Kemp, R.G.4
  • 29
    • 0029100281 scopus 로고
    • Amino acid consumption by the parasitic, amoeboid protists Entamoeba histolytica and E. invadens
    • Zuo X., and Coombs G.H. Amino acid consumption by the parasitic, amoeboid protists Entamoeba histolytica and E. invadens. FEMS Microbiol Lett 130 (1995) 253-258
    • (1995) FEMS Microbiol Lett , vol.130 , pp. 253-258
    • Zuo, X.1    Coombs, G.H.2
  • 30
    • 20444486114 scopus 로고    scopus 로고
    • Entamoeba histolytica: observations on metabolism based on the genome sequence
    • Anderson I.J., and Loftus B.J. Entamoeba histolytica: observations on metabolism based on the genome sequence. Exp Parasitol 110 (2005) 173-177
    • (2005) Exp Parasitol , vol.110 , pp. 173-177
    • Anderson, I.J.1    Loftus, B.J.2
  • 31
    • 0035847057 scopus 로고    scopus 로고
    • Identification of two Entamoeba histolytica sequence-specific URE4 enhancer-binding proteins with homology to the RNA-binding motif RRM
    • Schaenman J.M., Gilchrist C.A., Mann B.J., and Petri Jr. W.A. Identification of two Entamoeba histolytica sequence-specific URE4 enhancer-binding proteins with homology to the RNA-binding motif RRM. J Biol Chem 276 (2001) 1602-1609
    • (2001) J Biol Chem , vol.276 , pp. 1602-1609
    • Schaenman, J.M.1    Gilchrist, C.A.2    Mann, B.J.3    Petri Jr., W.A.4
  • 32
    • 10644279777 scopus 로고    scopus 로고
    • Genome-wide analysis of pre-mRNA splicing: intron features govern the requirement for the second-step factor. Prp17 in Saccharomyces cerevisiae and Schizosaccharomyces pombe
    • Sapra A.K., Arava Y., Khandelia P., and Vijayraghavan U. Genome-wide analysis of pre-mRNA splicing: intron features govern the requirement for the second-step factor. Prp17 in Saccharomyces cerevisiae and Schizosaccharomyces pombe. J Biol Chem 279 (2004) 52437-52446
    • (2004) J Biol Chem , vol.279 , pp. 52437-52446
    • Sapra, A.K.1    Arava, Y.2    Khandelia, P.3    Vijayraghavan, U.4
  • 33
    • 18044385384 scopus 로고    scopus 로고
    • Identification and gene expression analysis of a large family of transmembrane kinases related to the Gal/GalNAc lectin in Entamoeba histolytica
    • Beck D.L., Boettner D.R., Dragulev B., Ready K., Nozaki T., et al. Identification and gene expression analysis of a large family of transmembrane kinases related to the Gal/GalNAc lectin in Entamoeba histolytica. Eukaryot Cell 4 (2005) 722-732
    • (2005) Eukaryot Cell , vol.4 , pp. 722-732
    • Beck, D.L.1    Boettner, D.R.2    Dragulev, B.3    Ready, K.4    Nozaki, T.5
  • 34
    • 0030610666 scopus 로고    scopus 로고
    • Involvement of p21racA, phosphoinositide 3-kinase, and vacuolar ATPase in phagocytosis of bacteria and erythrocytes by Entamoeba histolytica: suggestive evidence for coincidental evolution of amebic invasiveness
    • Ghosh S.K., and Samuelson J. Involvement of p21racA, phosphoinositide 3-kinase, and vacuolar ATPase in phagocytosis of bacteria and erythrocytes by Entamoeba histolytica: suggestive evidence for coincidental evolution of amebic invasiveness. Infect Immun 65 (1997) 4243-4249
    • (1997) Infect Immun , vol.65 , pp. 4243-4249
    • Ghosh, S.K.1    Samuelson, J.2
  • 35
    • 10944246478 scopus 로고    scopus 로고
    • Dynamics of endocytic traffic of Entamoeba histolytica revealed by confocal microscopy and flow cytometry
    • Meza I., and Clarke M. Dynamics of endocytic traffic of Entamoeba histolytica revealed by confocal microscopy and flow cytometry. Cell Motil Cytoskeleton 59 (2004) 215-226
    • (2004) Cell Motil Cytoskeleton , vol.59 , pp. 215-226
    • Meza, I.1    Clarke, M.2
  • 36
    • 4444262526 scopus 로고    scopus 로고
    • Calcium binding protein 1 of the protozoan parasite Entamoeba histolytica interacts with actin and is involved in cytoskeleton dynamics
    • Sahoo N., Labruyere E., Bhattacharya S., Sen P., Guillen N., et al. Calcium binding protein 1 of the protozoan parasite Entamoeba histolytica interacts with actin and is involved in cytoskeleton dynamics. J Cell Sci 117 (2004) 3625-3634
    • (2004) J Cell Sci , vol.117 , pp. 3625-3634
    • Sahoo, N.1    Labruyere, E.2    Bhattacharya, S.3    Sen, P.4    Guillen, N.5
  • 37
    • 0034624230 scopus 로고    scopus 로고
    • Two novel calcium-binding proteins from cytoplasmic granules of the protozoan parasite Entamoeba histolytica
    • Nickel R., Jacobs T., Urban B., Scholze H., Bruhn H., et al. Two novel calcium-binding proteins from cytoplasmic granules of the protozoan parasite Entamoeba histolytica. FEBS Lett 486 (2000) 112-116
    • (2000) FEBS Lett , vol.486 , pp. 112-116
    • Nickel, R.1    Jacobs, T.2    Urban, B.3    Scholze, H.4    Bruhn, H.5
  • 38
    • 0030088109 scopus 로고    scopus 로고
    • Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes
    • Reuber T.L., and Ausubel F.M. Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Plant Cell 8 (1996) 241-249
    • (1996) Plant Cell , vol.8 , pp. 241-249
    • Reuber, T.L.1    Ausubel, F.M.2
  • 39
    • 28044442523 scopus 로고    scopus 로고
    • Identification of a family of BspA like surface proteins of Entamoeba histolytica with novel leucine rich repeats
    • Davis P.H., Zhang Z., Chen M., Zhang X., Chakraborty S., et al. Identification of a family of BspA like surface proteins of Entamoeba histolytica with novel leucine rich repeats. Mol Biochem Parasitol (2005)
    • (2005) Mol Biochem Parasitol
    • Davis, P.H.1    Zhang, Z.2    Chen, M.3    Zhang, X.4    Chakraborty, S.5
  • 40
    • 0032583190 scopus 로고    scopus 로고
    • Molecular cloning and characterization of the genes encoding two isoforms of cysteine synthase in the enteric protozoan parasite Entamoeba histolytica
    • Nozaki T., Asai T., Kobayashi S., Ikegami F., Noji M., et al. Molecular cloning and characterization of the genes encoding two isoforms of cysteine synthase in the enteric protozoan parasite Entamoeba histolytica. Mol Biochem Parasitol 97 (1998) 33-44
    • (1998) Mol Biochem Parasitol , vol.97 , pp. 33-44
    • Nozaki, T.1    Asai, T.2    Kobayashi, S.3    Ikegami, F.4    Noji, M.5
  • 41
    • 0032798894 scopus 로고    scopus 로고
    • Entamoeba histolytica: a novel cysteine protease and an adhesin form the 112 kDa surface protein
    • Garcia-Rivera G., et al. Entamoeba histolytica: a novel cysteine protease and an adhesin form the 112 kDa surface protein. Mol Microbiol 33 3 (1999) 556-568
    • (1999) Mol Microbiol , vol.33 , Issue.3 , pp. 556-568
    • Garcia-Rivera, G.1
  • 42
    • 0032897756 scopus 로고    scopus 로고
    • The TATA-box binding protein of Entamoeba histolytica: cloning of the gene and location of the protein by immunofluorescence and confocal microscopy
    • Luna-Arias J.P., et al. The TATA-box binding protein of Entamoeba histolytica: cloning of the gene and location of the protein by immunofluorescence and confocal microscopy. Microbiology 145 Part 1 (1999) 33-40
    • (1999) Microbiology , vol.145 , Issue.PART 1 , pp. 33-40
    • Luna-Arias, J.P.1
  • 43
    • 0346457089 scopus 로고    scopus 로고
    • Molecular cloning and characterization of a protein farnesyltransferase from the enteric protozoan parasite Entamoeba histolytica
    • Kumagai M., et al. Molecular cloning and characterization of a protein farnesyltransferase from the enteric protozoan parasite Entamoeba histolytica. J Biol Chem 279 3 (2004) 2316-2323
    • (2004) J Biol Chem , vol.279 , Issue.3 , pp. 2316-2323
    • Kumagai, M.1


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