Initial guesses generation for fluorescence intensity distribution analysis

European Biophysics Journal

Volumn 35, Issue 5, 2006, Pages 410-423

  Skakun, Victor V ^a   Novikov, Eugene G ^b   Apanasovich, Vladimir V ^c   Tanke, Hans J ^a   Deelder, André M ^a   Mayboroda, Oleg A ^a  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

^b INSTITUT CURIE   (France)

^c BELARUSIAN STATE UNIVERSITY   (Belarus)

Author keywords

Data analysis; Fluorescence correlation spectroscopy; Fluorescence cumulants analysis; Fluorescence fluctuation spectroscopy; Fluorescence intensity distribution analysis; Method of moments; Photon counting histogram

Indexed keywords

ALGORITHM; ANALYTIC METHOD; ARTICLE; DATA ANALYSIS; FLUORESCENCE; FLUORESCENCE INTENSITY DISTRIBUTION ANALYSIS; HISTOGRAM; INFORMATION PROCESSING; MATHEMATICAL ANALYSIS; SIMULATION; SPECTROSCOPY;

ALGORITHMS; BIOPOLYMERS; CELL PHYSIOLOGICAL PHENOMENA; CELL PHYSIOLOGY; COMPUTER SIMULATION; DATA INTERPRETATION, STATISTICAL; MODELS, BIOLOGICAL; MODELS, STATISTICAL; SPECTROMETRY, FLUORESCENCE;

EID: 33646445882     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00249-006-0048-8     Document Type: Article

References (29)

1. Chen Y, Müller JD, So PT, Gratton E (1999) The photon counting histogram in fluorescence fluctuation spectroscopy. Biophys J 77:553-567
2. Chen Y, Müller JD, Tetin SY, Tyner JD, Gratton E (2000) Probing ligand protein binding equilibria with fluorescence fluctuation spectroscopy. Biophys J 79:1074-1084
3. Chen Y, Müller JD, Ruan Q, Gratton E (2002) Molecular brightness characterization of EGFP in vivo by fluorescence fluctuation spectroscopy. Biophys J 82:133-144
4. Deelder AM, van Dam GJ, Kornelis D, Fillie YE, van Zeyl RJ (1996) Schistosoma: analysis of monoclonal antibodies reactive with the circulating antigens CAA and CCA. Parasitology 112(Pt 1):21-35
5. Demas JN (1983) Exited state lifetime measurements. Academic Press, New York
6. Elson EL, Magde D (1974) Fluorescence correlation spectroscopy. I. Conceptual basis and theory. Biopolymers 13:1-27
7. Evotec Biosystems AG (1998) International Patent Application PCT/EP97/05619 and International Publication No. WO 98/ 16814
8. Hess ST, Huang S, Heikal AA, Webb WW (2002) Biological and chemical applications of fluorescence correlation spectroscopy: a review. Biochemistry 41:697-705
9. Johnson LM, Faunt LM (1992) Parameter estimation by least-squares methods. Methods Enzymol 210:1-37
10. Kask P, Palo K, Ullmann D, Gall K (1999) Fluorescence-intensity distribution analysis and its application in biomolecular detection technology. Proc Natl Acad Sci USA 96:13756-13761
11. Kask P, Palo K, Fay N, Brand L, Mets Ü, Ullmann D, Jungmann J, Pschorr J, Gall K (2000) Two-dimensional fluorescence intensity distribution analysis: theory and applications. Biophys J 78:1703-1713
12. Kask P, Eggeling C, Palo K, Ullmann D, Gall K (2002) Fluorescence intensity distribution analysis (FIDA) and related fluorescence fluctuation techniques: theory and practice. In: Kraayenhof R, Visser AJWG, Gerritsen HC (eds) Fluorescent spectroscopy, imaging and probes. New tools in chemical, physical and life sciences. Springer-Verlag, Berlin Heidelberg, pp 153-181
13. Koppel DE (1974) Statistical accuracy in fluorescence correlation spectroscopy. Phys Rev A 10(N6):1938-1945
14. Korn GA, Korn TM (1968) Mathematical handbook for scientists and engineers. Definitions, theorems and formulas for reference and review. Second, enlarged and revised edition. McGraw-Hill Book Company, New York
15. Lau HT (1995) A numerical library in C for scientists and engineers. CRC Press Inc., Boca Raton
16. Magde D, Elson EL, Webb WW (1972) Thermodynamic fluctuations in a reacting system: measurement by fluorescence correlation spectroscopy. Phys Rev Lett 29:704-708
17. Magde D, Elson EL, Webb WW (1974) Fluorescence correlation spectroscopy. II. An experimental realization. Biopolymers 13:29-61
18. Marquardt DW (1963) Algorithm for least squares estimation of nonlinear parameters. J Soc Ind Appl Math 11:431-441
19. Meseth U, Wohland T, Rigler R, Vogel H (1999) Resolution of fluorescence correlation measurements. Biophys J 76:1619-1631
20. Müller JD (2004) Cumulant analysis in fluctuation spectroscopy. Biophys J 86:3981-3992
21. Müller JD, Chen Y, Gratton E (2000) Resolving heterogeneity on the single molecular level with the photon counting histogram. Biophys J 78:474-486
22. Palo K, Mets Ü, Jager S, Kask P, Gall K (2000) Fluorescence intensity multiple distribution analysis: concurrent determination of diffusion times and molecular brightness. Biophys J 79:2858-2866
23. Palo K, Brandt L, Eggeling C, Jager S, Kask P, Gall K (2002) Fluorescence intensity and lifetime distribution analysis: toward higher accuracy in fluorescence fluctuation spectroscopy. Biophys J 83:605-618
24. Press WH, Teukolsky SA, Vetterling WT, Flannery BP (1992) Numerical recipes in C. The art of scientific computing. 2nd edn. Cambridge University Press, Cambridge
25. Qian H (1990) On the statistics of fluorescence correlation spectroscopy. Biophys Chem 38:49-57
26. Qian H, Elson EL (1990a) On the analysis of high order moments of fluorescence fluctuations. Biophys J 57:375-380
27. Qian H, Elson EL (1990b) Distribution of molecular aggregation by analysis of fluctuation moments. Proc Natl Acad Sci USA 87:5479-5483
28. Remoortere A, Hokke CH, van Dam GJ, van Dam I, Deelder AM, van den Eijnden DH (2000) Various stages of schistosoma express Lewis(x), LacdiNAc, GalNAcbeta1-4 (Fucalpha1-3)GlcNAc and GalNAcbeta1-4(Fucalpha1-2Fucalpha1-3) GlcNAc carbohydrate epitopes: detection with monoclonal antibodies that are characterized by enzymatically synthesized neoglyco-proteins. Glycobiology 10:601-609
29. Rigler R, Mets Ü, Widengren J, Kask P (1993) Fluorescence correlation spectroscopy with high count rates and low background: analysis of translational diffusion. Eur Biophys J 22:169-175