Gene expression profile analysis in astaxanthin-induced Haematococcus pluvialis using a cDNA microarray

Planta

Volumn 223, Issue 6, 2006, Pages 1231-1242

  Eom, Hyunsuk ^a   Lee, Choul Gyun ^a   Jin, EonSeon ^b  

^a Inha University   (South Korea)

^b Hanyang University   (South Korea)

Author keywords

Astaxanthin; DNA microarray; Haematococcus pluvialis; Real time PCR; Transcript profiling

Indexed keywords

ALGAL PROTEIN; ASTAXANTHIN; CAROTENOID; CHLOROPHYLL; NITROGEN; XANTHOPHYLL;

ARTICLE; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETICS; GREEN ALGA; METABOLISM; METHODOLOGY; PHOTOSYNTHESIS; RADIATION EXPOSURE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VALIDATION STUDY;

ALGAE, GREEN; ALGAL PROTEINS; CAROTENOIDS; CHLOROPHYLL; GENE EXPRESSION PROFILING; NITROGEN; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOTOSYNTHESIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; XANTHOPHYLLS;

CHLAMYDOMONADALES; CHLOROPHYTA; HAEMATOCOCCUS PLUVIALIS;

EID: 33646422774     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-005-0171-2     Document Type: Article

References (53)

1. Bartley GE, Scolnik PA (1995) Pigments for photoprotection, visual attraction, and human health. Plant Cell 7:1027-1038
2. Blanco-Portales R, Medina-Escobar N, Lopez-Raez JA,Gonzalez-Reyes JA, Villalba JM, Moyano E, Caballero JL, Munoz-Blanco J (2002) Cloning, expression and immunolocalization pattern of a cinnamyl alcohol dehydrogenase from strawberry. J Exp Botany 53:1723-1734
3. Boussiba S (2000) Carotenogenesis in the green alga Haematococcus pluvialis: cellular physiology and stress response. Physiol Plant 108:111-117
4. Boussiba S, Vonshak A (1991) Astaxanthin accumulation in the green alga Haematococcus pluvialis. Plant Cell Physiol 32:1077-1082
5. Breitenbach J, Fernandez-Gonzalez B, Vioque A, Sandmann G (1998) A higher-plant type f-carotene desaturase in the cyanobacterium Synechocystis PCC6803. Plant Mol Biol 36:725-732
6. Dietmaier W, Fabry S, Huber H, Schmitt R (1995) Analysis of a family of ypt genes and their products from Chlamydomonas reinhardtii. Gene 158:41-50
7. Dietz KJ, Horling F, Konig J, Baier M (2002) The function of the chloroplast 2-cysteine peroxiredoxin in peroxide detoxification and its regulation. J Exp Bot 53:1321-1329
8. Droop MR (1954) Conditions governing haematochrome formation and loss in the alga Haematocuccus pluvialis Flotow. Arch Mikrobiol 20(4):391-397
9. Eom HS, Park S, Lee C-G, Jin ES (2005) Gene expression profiling of an eukaryotic microalga, Haematococcus pluvialis. J Microbiol Biotech 15:1060-1066
10. Escoubas J, Lomas M, LaRoche J, Falkowski PG (1995) Light intensity regulation of cab gene transcription is signaled by the redox state of the plastoquinone pool. Proc Natl Acad Sci USA 92:10237-10241
11. Fabregas J, Dominguez A, Garcia Alvarez D, Lamela T, Otero A (1998) Induction of astaxanthin accumulation by nitrogen and magnesium deficiencies in Haematococcus pluvialis. Biotechnol Lett 20:623-626
12. Frugoli JA, Zhong HH, Nuccio ML, McCourt P, McPeek MA, Thomas TL, McClung CR(1996) Catalase is encoded by a multigene family in Arabidopsis thaliana (L.) Heynh. Plant Physiol 112:327-336
13. Fryer MJ, Ball L, Oxborough K, Karpinski S, Mullineaux PM, Baker NR (2003) Control of ascorbate peroxidase expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organization of Arabidopsis leaves. Plant J 33:691-705
14. Guerin M, Huntley ME, Olaizola M (2003) Haematococcus astaxanthin: applications for human health and nutrition. Trends Biotechnol 5:210-216
15. Grünewald K, Hagen C, Braun W (1997) Secondary carotenoid accumulation in flagellates of the green alga Haematococcus lacustris. Eur J Phycol 32:387-392
16. Grünewald K, Eckert M, Hirschberg J, Hagen C (2000) Phytoene desaturase is localized exclusively in the chloroplast and up-regulated at the mRNA level during accumulation of secondary carotenoids in Haematococcus pluvialis (Volvocales, chlorophyceae). Plant Physiol 122:1261-1268
17. Grünewald K, Hirschberg J, Hagen C (2001) Ketocarotenoid biosynthesis outside of plastids in the unicellular green alga Haematococcus pluvialis. J Biol Chem 276(8):6023-6029
18. Gygi SP, Rochon Y, Franza BR, Aebersold R (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19:1720-1730
19. Harker M, Tsavalos AJ, Young AJ (1996) Factors responsible for astaxanthin formation in the chlorophyte Haematococcus pluvialis. Bioresour Technol 55:207-214
20. Heddad M, Adamska I (2000) Light stress-regulated two-helix proteins in Arabidopsis thaliana related to the chlorophyll a/b-binding gene family. Proc Natl Acad Sci USA 97:3741-3746
21. Jin ES, Polle JWE, Melis A (2001) Involvement of zeaxanthin and of the Cbr protein in the repair of photosystem-II from photoinhibition in the green alga Dunaliella salina. Biochem Biophys Acta 1506:244-259
22. Jin ES, Yokthongwattana K, Polle JE, Melis A (2003) Role of the reversible xanthophyll cycle in the photosystem II damage and repair cycle in Dunaliella salina. Plant Physiol 132:352-364
23. Joel AK, Yajun Wu, Hur-Song C, Tong Z, Xun W, Jeff FH (2002) Transcriptome, changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol 130:2129-2141
24. Jung HG, Ni W (1998) Lignification of plant cell walls: impact of genetic manipulation. Proc Natl Acad Sci USA 95:12742-12743
25. Kobayashi M (2000) In vivo antioxidant role of astaxanthin under oxidative stress in the green alga Haematococcus pluvialis. Appl Microbiol Biotechnol 54(4):550-555
26. Kobayashi M (2003) Astaxanthin biosynthesis enhanced by reactive oxygen species in the green alga Haematococcus pluvialis. Biotech Biopro Eng 8:322-330
27. Kobayashi M, Kakizono T, Nishio N, Nagai S, Kurimura Y, Tsuji Y (1997a) Antioxidant role of astaxanthin in the green alga Haematococcus pluvialis. Appl Microbiol Biotechnol 48:351-356
28. Kobayashi M, Kurimura Y, Tsuji Y (1997b) Light-independent, astaxanthin production by the green microalga Haematococcus pluvialis under salt stress. Biotechnol Lett 19:507-509
29. Krishna RG, Wold F (1993) Post-translational modification of proteins. Adv Enzymol Relat Areas Mol Biol 67:265-298
30. Lapierre C, Pollet B, Petit-Conil M, Toval G, Romero J, Pilate G, Leple JC, Boerjan W, Ferret VV, De Nadai V, Jouanin L (1999) Structural alterations of lignins in transgenic poplars with depressed cinnamyl alcohol dehydrogenase or caffeic acid O-methyltransferase activity have an opposite impact on the efficiency of industrial kraft pulping. Plant Physiol 119(1):153-164
31. Larroy C, Pares X, Biosca JA (2002) Characterization of a Saccharomyces cerevisiae NADP(H)-dependent alcohol dehydrogenase (ADHVII), a member of the cinnamylalcohol dehydrogenase family. Eur J Biochem 269:5738-5745
32. Linden H (1999) Carotenoid hydroxylase from Haematococcus pluvialis: cDNA sequence, regulation and functional complementation. Biochim Biophys Acta 1446:203-212
33. -ΔΔC(T) method. Methods 25:402-408
34. Lotan T, Hirschberg J (1995) Cloning and expression in Escherichia coli of the gene encoding β-4-C-oxygenase, that converts β-carotene to the ketocarotenoid canthaxanthin in Haematococcus pluvialis. FEBS Lett 364:125-128
35. McClung CR (1997) Regulation of catalases in Arabidopsis. Free Radic Biol Med 23:489-496
36. Olaizola M (2003) Commercial development of microalgal biotechnology: from the test tube to the marketplace. Biomol Eng 20:459-466
37. Pfeffer SR (2001) Rab GTPases: specifying and deciphering organelle identity and function. Trends Cell Biol 11:487-491
38. Rishi AS, Nelson ND, Goyal A (2001) Improvement of Populus through genetic engineering. Indian J Plant Physiol 6:119-126
39. Schena M, Shalon D, Davis RW, Brown PO, (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470
40. Schroeder WA, Johnson EA (1995) Singlet oxygen and peroxyl radicals regulate carotenoid biosynthesis in Phaffia rhodozyma. J Biol Chem 270(31):18374-18379
41. Shikanai T, Endo T, Hashimoto T, Yamada Y, Asada K, Yokota A (1998) Directed disruption of the tobacco ndhB gene impairs cyclic electron flow around photosystem I. Proc Natl Acad Sci USA 95(16):9705-9709
42. Shalon D, Smith SJ, Brown PO, (1996) A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 6:639-645
43. Smith BM, Morrissey PJ, Guenther JE, Nemson JA, Harrison MA, Allen JF, Melis A (1990) Response of the photosynthetic apparatus in Dunaliella salina (green algae) to irradiance stress. Plant Physiol 93:1433-1440
44. Steinbrenner J, Linden H (2001) Regulation of two carotenoid biosynthesis genes coding for phytoene synthase and carotenoid hydroxylase during stress-induced astaxanthin formation in the green alga Haematococcus pluvialis. Plant Physiol 125:810-817
45. Steinbrenner J, Linden H (2003) Light induction of carotenoid biosynthesis genes in the green alga Haematococcus pluvialis: regulation by photosynthetic redox control. Plant Mol Biol 52:343-356
46. Sun Z, Cunningham FX, Gantt E (1998) Differential expression of two isopentenyl pyrophosphate isomerases and enhanced carotenoid accumulation in a unicellular chlorophyte. Proc Natl Acad Sci USA 95:11482-11488
47. Tanaka A, Melis A (1997) Irradiance-dependent changes in the size and composition of the chlorophyll a-b light-harvesting complex in the green alga Dunaliella salina. Plant Cell Physiol 38:17-24
48. Wang SB, Hu Q, Sommerfeld M, Chen F (2003) An optimized protocol for isolation of soluble proteins from microalgae for two-dimensional gel electrophoresis analysis. J Appl Phycol 15:485-496
49. Wang SB, Chen F, Sommerfeld M (2004a) Proteomic analysis of molecular response to oxidative stress by the green alga Haematococcus pluvialis (Chlorophyceae). Planta 220:17-29
50. Wang SB, Hu Q, Sommerfeld M, Chen F (2004b) Cell wall proteomics of the green alga Haematococcus pluvialis (Chlorophyceae). Proteomics 4:692-708
51. Wilkin JM, Soetaert K, Stelandre M, Buyssens P, Castillo G, Demoulin V, Bottu G, Laneelle MA, Daffe M, De Bruyn J (1999) Overexpression, purification and characterization of Mycobacterium bovis BCG alcohol dehydrogenase. Eur J Biochem 262:299-307
52. Woo HA, Kang SW, Kim HK, Yang KS, Chae HZ, Rhee SG (2003) Reversible oxidation of the active site cysteine of peroxiredoxins to cysteine sulfinic acid. Immunoblot detection with antibodies specific for the hyperoxidized cysteine-containing sequence. J Biol Chem 278(48):47361-47364
53. Zhong HH, McClung CR (1996) The arcadian clock gates expression of two Arabidopsis catalase genes to distinct and opposite circadian phases. Mol Gen Genet 251:196-203