메뉴 건너뛰기




Volumn 65, Issue 3, 2006, Pages 417-424

16S rDNA PCR-denaturing gradient gel electrophoresis in determining proportions of coexisting Actinobacillus actinomycetemcomitans strains

Author keywords

16S rRNA gene; Actinobacillus actinomycetemcomitans; Coexistence; Denaturing gradient gel electrophoresis; PCR; Serotype

Indexed keywords

DNA 16S;

EID: 33646361072     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2005.08.016     Document Type: Article
Times cited : (8)

References (33)
  • 1
    • 1942443733 scopus 로고    scopus 로고
    • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons
    • Acinas S.G., Marcelino L.A., Klepac-Ceraj V., and Polz M.F. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol. 186 (2004) 2629-2635
    • (2004) J. Bacteriol. , vol.186 , pp. 2629-2635
    • Acinas, S.G.1    Marcelino, L.A.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 2
    • 0033145265 scopus 로고    scopus 로고
    • Oral ecology and person-to-person transmission of Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis
    • Asikainen S., and Chen C. Oral ecology and person-to-person transmission of Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis. Periodontol. 2000 20 (1999) 65-81
    • (1999) Periodontol. 2000 , vol.20 , pp. 65-81
    • Asikainen, S.1    Chen, C.2
  • 3
    • 0026149553 scopus 로고
    • Distribution of Actinobacillus actinomycetemcomitans serotypes in periodontal health and disease
    • Asikainen S., Lai C.H., Alaluusua S., and Slots J. Distribution of Actinobacillus actinomycetemcomitans serotypes in periodontal health and disease. Oral Microbiol. Immunol. 6 (1991) 115-118
    • (1991) Oral Microbiol. Immunol. , vol.6 , pp. 115-118
    • Asikainen, S.1    Lai, C.H.2    Alaluusua, S.3    Slots, J.4
  • 4
    • 0029278708 scopus 로고
    • Actinobacillus actinomycetemcomitans genotypes in relation to serotypes and periodontal status
    • Asikainen S., Chen C., and Slots J. Actinobacillus actinomycetemcomitans genotypes in relation to serotypes and periodontal status. Oral Microbiol. Immunol. 10 (1995) 65-68
    • (1995) Oral Microbiol. Immunol. , vol.10 , pp. 65-68
    • Asikainen, S.1    Chen, C.2    Slots, J.3
  • 5
    • 3843069912 scopus 로고    scopus 로고
    • Use of 16S ribosomal DNA PCR and denaturing gradient gel electrophoresis for analysis of the microfloras of healing and nonhealing chronic venous leg ulcers
    • Davies C.E., Hill K.E., Wilson M.J., Stephens P., Hill C.M., Harding K.G., and Thomas D.W. Use of 16S ribosomal DNA PCR and denaturing gradient gel electrophoresis for analysis of the microfloras of healing and nonhealing chronic venous leg ulcers. J. Clin. Microbiol. 42 (2004) 3549-3557
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 3549-3557
    • Davies, C.E.1    Hill, K.E.2    Wilson, M.J.3    Stephens, P.4    Hill, C.M.5    Harding, K.G.6    Thomas, D.W.7
  • 6
    • 4244048796 scopus 로고    scopus 로고
    • Actinobacillus actinomycetemcomitans serotype e-biotypes, genetic diversity and distribution in relation to periodontal status
    • Dogan B., Saarela M.H., Jousimies-Somer H., Alaluusua S., and Asikainen S. Actinobacillus actinomycetemcomitans serotype e-biotypes, genetic diversity and distribution in relation to periodontal status. Oral Microbiol. Immunol. 14 (1999) 98-103
    • (1999) Oral Microbiol. Immunol. , vol.14 , pp. 98-103
    • Dogan, B.1    Saarela, M.H.2    Jousimies-Somer, H.3    Alaluusua, S.4    Asikainen, S.5
  • 8
    • 4544322201 scopus 로고    scopus 로고
    • Clonal distribution of natural competence in Actinobacillus actinomycetemcomitans
    • Fujise O., Lakio L., Wang Y., Asikainen S., and Chen C. Clonal distribution of natural competence in Actinobacillus actinomycetemcomitans. Oral Microbiol. Immunol. 19 (2004) 340-342
    • (2004) Oral Microbiol. Immunol. , vol.19 , pp. 340-342
    • Fujise, O.1    Lakio, L.2    Wang, Y.3    Asikainen, S.4    Chen, C.5
  • 9
    • 0035432220 scopus 로고    scopus 로고
    • Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR
    • Ishii K., and Fukui M. Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR. Appl. Environ. Microbiol. 67 (2001) 3753-3755
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3753-3755
    • Ishii, K.1    Fukui, M.2
  • 10
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: the complexity hypothesis
    • Jain R., Rivera M.C., and Lake J.A. Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 3801-3806
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 11
    • 1842457611 scopus 로고    scopus 로고
    • A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis
    • Janse I., Bok J., and Zwart G. A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis. J. Microbiol. Methods 57 (2004) 279-281
    • (2004) J. Microbiol. Methods , vol.57 , pp. 279-281
    • Janse, I.1    Bok, J.2    Zwart, G.3
  • 12
    • 0034877216 scopus 로고    scopus 로고
    • Structural and genetic analyses of O polysaccharide from Actinobacillus actinomycetemcomitans serotype f
    • Kaplan J.B., Perry M.B., MacLean L.L., Furgang D., Wilson M.E., and Fine D.H. Structural and genetic analyses of O polysaccharide from Actinobacillus actinomycetemcomitans serotype f. Infect. Immun. 69 (2001) 5375-5384
    • (2001) Infect. Immun. , vol.69 , pp. 5375-5384
    • Kaplan, J.B.1    Perry, M.B.2    MacLean, L.L.3    Furgang, D.4    Wilson, M.E.5    Fine, D.H.6
  • 13
    • 0036208842 scopus 로고    scopus 로고
    • Population structure and genetic diversity of Actinobacillus actinomycetemcomitans strains isolated from localized juvenile periodontitis patients
    • Kaplan J.B., Schreiner H.C., Furgang D., and Fine D.H. Population structure and genetic diversity of Actinobacillus actinomycetemcomitans strains isolated from localized juvenile periodontitis patients. J. Clin. Microbiol. 40 (2002) 1181-1187
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 1181-1187
    • Kaplan, J.B.1    Schreiner, H.C.2    Furgang, D.3    Fine, D.H.4
  • 15
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., and Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178 (1996) 5636-5643
    • (1996) J. Bacteriol. , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 16
    • 0033989510 scopus 로고    scopus 로고
    • Heterogeneity of Actinobacillus actinomycetemcomitans strains in various human infections and relationships between serotype, genotype, and antimicrobial susceptibility
    • Paju S., Carlson P., Jousimies-Somer H., and Asikainen S. Heterogeneity of Actinobacillus actinomycetemcomitans strains in various human infections and relationships between serotype, genotype, and antimicrobial susceptibility. J. Clin. Microbiol. 38 (2000) 79-84
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 79-84
    • Paju, S.1    Carlson, P.2    Jousimies-Somer, H.3    Asikainen, S.4
  • 17
    • 85005216114 scopus 로고
    • In vitro antimicrobial susceptibility of different serotypes of Actinobacillus actinomycetemcomitans
    • Pajukanta R., Asikainen S., Saarela M., Alaluusua S., and Jousimies-Somer H. In vitro antimicrobial susceptibility of different serotypes of Actinobacillus actinomycetemcomitans. Scand. J. Dent. Res. 101 (1993) 299-303
    • (1993) Scand. J. Dent. Res. , vol.101 , pp. 299-303
    • Pajukanta, R.1    Asikainen, S.2    Saarela, M.3    Alaluusua, S.4    Jousimies-Somer, H.5
  • 18
    • 12544256031 scopus 로고    scopus 로고
    • Monitoring of accelerated naphthalene-biodegradation in a bioaugmented soil slurry
    • Piskonen R., Nyyssönen M., Rajamäki T., and Itävaara M. Monitoring of accelerated naphthalene-biodegradation in a bioaugmented soil slurry. Biodegradation 16 (2005) 127-134
    • (2005) Biodegradation , vol.16 , pp. 127-134
    • Piskonen, R.1    Nyyssönen, M.2    Rajamäki, T.3    Itävaara, M.4
  • 19
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz M.F., and Cavanaugh C.M. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64 (1998) 3724-3730
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 20
    • 0028031452 scopus 로고
    • Population structure of Actinobacillus actinomycetemcomitans: a framework for studies of disease-associated properties
    • Poulsen K., Theilade E., Lally E.T., Demuth D.R., and Kilian M. Population structure of Actinobacillus actinomycetemcomitans: a framework for studies of disease-associated properties. Microbiology 140 Pt 8 (1994) 2049-2060
    • (1994) Microbiology , vol.140 , Issue.PART 8 , pp. 2049-2060
    • Poulsen, K.1    Theilade, E.2    Lally, E.T.3    Demuth, D.R.4    Kilian, M.5
  • 21
    • 0026935456 scopus 로고
    • Frequency and stability of mono- or poly-infection by Actinobacillus actinomycetemcomitans serotypes a, b, c, d or e
    • Saarela M., Asikainen S., Alaluusua S., Pyhälä L., Lai C.H., and Jousimies-Somer H. Frequency and stability of mono- or poly-infection by Actinobacillus actinomycetemcomitans serotypes a, b, c, d or e. Oral Microbiol. Immunol. 7 (1992) 277-279
    • (1992) Oral Microbiol. Immunol. , vol.7 , pp. 277-279
    • Saarela, M.1    Asikainen, S.2    Alaluusua, S.3    Pyhälä, L.4    Lai, C.H.5    Jousimies-Somer, H.6
  • 22
    • 0033124283 scopus 로고    scopus 로고
    • Persistence of oral colonization by the same Actinobacillus actinomycetemcomitans strain(s)
    • Saarela M.H., Dogan B., Alaluusua S., and Asikainen S. Persistence of oral colonization by the same Actinobacillus actinomycetemcomitans strain(s). J. Periodontol. 70 (1999) 504-509
    • (1999) J. Periodontol. , vol.70 , pp. 504-509
    • Saarela, M.H.1    Dogan, B.2    Alaluusua, S.3    Asikainen, S.4
  • 23
    • 0042970166 scopus 로고    scopus 로고
    • Development of the intestinal bacterial composition in hospitalized preterm infants in comparison with breast-fed, full-term infants
    • Schwiertz A., Gruhl B., Löbnitz M., Michel P., Radke M., and Blaut M. Development of the intestinal bacterial composition in hospitalized preterm infants in comparison with breast-fed, full-term infants. Pediatr. Res. 54 (2003) 393-399
    • (2003) Pediatr. Res. , vol.54 , pp. 393-399
    • Schwiertz, A.1    Gruhl, B.2    Löbnitz, M.3    Michel, P.4    Radke, M.5    Blaut, M.6
  • 24
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki M.T., and Giovannoni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62 (1996) 625-630
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 25
    • 0036972364 scopus 로고    scopus 로고
    • Analysis of the intestinal microflora using molecular methods
    • Tannock G.W. Analysis of the intestinal microflora using molecular methods. Eur. J. Clin. Nutr. 56 Suppl. 4 (2002) S44-S49
    • (2002) Eur. J. Clin. Nutr. , vol.56 , Issue.SUPPL. 4
    • Tannock, G.W.1
  • 26
    • 0036566806 scopus 로고    scopus 로고
    • Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'
    • Thompson J.R., Marcelino L.A., and Polz M.F. Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Res. 30 (2002) 2083-2088
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2083-2088
    • Thompson, J.R.1    Marcelino, L.A.2    Polz, M.F.3
  • 27
    • 0032902755 scopus 로고    scopus 로고
    • Two distinct mechanisms cause heterogeneity of 16S rRNA
    • Ueda K., Seki T., Kudo T., Yoshida T., and Kataoka M. Two distinct mechanisms cause heterogeneity of 16S rRNA. J. Bacteriol. 181 (1999) 78-82
    • (1999) J. Bacteriol. , vol.181 , pp. 78-82
    • Ueda, K.1    Seki, T.2    Kudo, T.3    Yoshida, T.4    Kataoka, M.5
  • 29
    • 0029972052 scopus 로고    scopus 로고
    • The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species
    • Wang G.C., and Wang Y. The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species. Microbiology 142 Pt 5 (1996) 1107-1114
    • (1996) Microbiology , vol.142 , Issue.PART 5 , pp. 1107-1114
    • Wang, G.C.1    Wang, Y.2
  • 30
    • 0036282335 scopus 로고    scopus 로고
    • Natural transformation and DNA uptake signal sequences in Actinobacillus actinomycetemcomitans
    • Wang Y., Goodman S.D., Redfield R.J., and Chen C. Natural transformation and DNA uptake signal sequences in Actinobacillus actinomycetemcomitans. J. Bacteriol. 184 (2002) 3442-3449
    • (2002) J. Bacteriol. , vol.184 , pp. 3442-3449
    • Wang, Y.1    Goodman, S.D.2    Redfield, R.J.3    Chen, C.4
  • 31
  • 32
    • 0032835111 scopus 로고    scopus 로고
    • Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon
    • Yap W.H., Zhang Z., and Wang Y. Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. J. Bacteriol. 181 (1999) 5201-5209
    • (1999) J. Bacteriol. , vol.181 , pp. 5201-5209
    • Yap, W.H.1    Zhang, Z.2    Wang, Y.3
  • 33
    • 0020620385 scopus 로고
    • Serology of oral Actinobacillus actinomycetemcomitans and serotype distribution in human periodontal disease
    • Zambon J.J., Slots J., and Genco R.J. Serology of oral Actinobacillus actinomycetemcomitans and serotype distribution in human periodontal disease. Infect. Immun. 41 (1983) 19-27
    • (1983) Infect. Immun. , vol.41 , pp. 19-27
    • Zambon, J.J.1    Slots, J.2    Genco, R.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.