The molecular epidemiology of human immunodeficiency virus type 1 in six cities in Britain and Ireland

Virology

Volumn 235, Issue 1, 1997, Pages 166-177

  Brown, A J Leigh ^a   Lobidel, D ^a   Wade, C M ^a   Rebus, S ^a   Phillips, A N ^b   Brettle, R P ^c   France, A J ^d   Leen, C S ^c   McMenamin, J ^e   McMillan, A ^f   Maw, R D ^g   Mulcahy, F ^h   Robertson, J R ⁱ   Sankar, K N ^j   Scott, G ^f   Wyld, R ^c   Peutherer, J F ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b ROYAL FREE HOSPITAL   (United Kingdom)

^c CITY HOSPITAL   (United Kingdom)

^d King's Cross Hospital   (United Kingdom)

^e RUCHILL HOSPITAL   (United Kingdom)

^f ROYAL INFIRMARY OF EDINBURGH   (United Kingdom)

^g ROYAL VICTORIA HOSPITAL   (United Kingdom)

^h ST JAMES S HOSPITAL   (Ireland)

ⁱ Muirhouse Medical Group   (United Kingdom)

^j NEWCASTLE GENERAL HOSPITAL   (United Kingdom)

more..

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

ARTICLE; BIODIVERSITY; GEOGRAPHIC DISTRIBUTION; HOMOSEXUALITY; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; HUMAN TISSUE; INCIDENCE; INFECTION RISK; MAJOR CLINICAL STUDY; MALE; MOLECULAR DYNAMICS; PRIORITY JOURNAL; SEXUAL INTERCOURSE; UNITED KINGDOM;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 17344391186     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8656     Document Type: Article

References (45)

1. Albert J., Wahlberg J., Leitner T., Escanilla D., Uhlen M. Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes. J. Virol. 68:1994;5918-5924.
2. Arnold C., Balfe P., Clewley J. P. Sequence distances between env genes of HIV-1 from individuals infected from the same source: Implications for the investigation of possible transmission events. Virology. 211:1995;198-203.
3. Balfe P., Simmonds P., Ludlam C. A., Bishop J. O., Leigh Brown A. J. Concurrent evolution of human immunodeficiency virus type 1 in patients infected from the same source: Rate of sequence change and low frequency of inactivating mutations. J. Virol. 64:1990;6221-6233.
4. Chant K., Lowe D., Rubin G., Manning W., O'Donoughue R., Lyle D., Levy M., Morey S., Kaldor J., Garsia R., Penny R., Marriott D., Cunningham A., Tracy G. D. Patient-to-patient transmission of HIV in private surgical consulting rooms. Lancet. 342:1993;1548-1549.
5. Dietrich U., Grez M., von Briesen H., Panhans B., Geissendorfer M., Kuhnel H., Maniar J., Mahambre G., Becker W. B., Mecker M. L. B., Rubsamen Waigmann H. HIV-1 strains from India are highly divergent from prototypic African and US/European strains, but are linked to a South African isolate. AIDS. 7:1993;23-27.
6. Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791.
7. Felsenstein J. PHYLIP-phylogeny inference package (version 3.2). Cladistics. 5:1989;164-166.
8. Grez M., Dietrich U., Balfe P., von Briesen H., Maniar J. K., Mahambre G., Delwart E. L., Mullins J. I., Rubsamen Waigmann H. Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses. J. Virol. 68:1994;2161-2168.
9. Higgins D. G. Sequence ordinations: A multivariate analysis approach to analysing large sequence datasets. CABIOS. 8:1992;15-22.
10. Higgins D. G., Sharp P. M. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 73:1988;237-244.
11. Hillis D. M., Huelsenbeck J. P., Cunningham C. W. Application and accuracy of molecular phylogenies. Science. 264:1994;671-677.
12. Hillis D. M., Huelsenbeck J. P. Support for dental HIV transmission. Nature. 369:1994;24-25.
13. Holmes E. C., Zhang L. Q., Simmonds P., Rogers A. S., Leigh Brown A. J. Molecular investigation of Human Immunodeficiency Virus (HIV) infection in a patient of an HIV-infected surgeon. J. Infect. Dis. 167:1993;1411-1414.
14. Holmes E. C., Zhang L. Q., Robertson P., Cleland A., Harvey E., Simmonds P., Leigh Brown A. J. The molecular epidemiology of HIV-1 in Edinburgh, Scotland. J. Infect. Dis. 171:1995;45-53.
15. Jaffe H. W., McCurdy J. M., Kalish M. L., Liberti T., Metellus G., Bowman B. H., Neasman A. R., Witte J. J. Lack of transmission of human immunodeficiency virus in the practice of a dentist with AIDS. Ann. Intern. Med. 121:1994;855-859.
16. Kalish M. L., Luo C. C., Raktham S., Wasi C., Baldwin A., Schochetman G., Mastro T. D., Young N., Vanichseni S., Rubsamen Waigmann H., von Briesen H., Mullins J. I., Delwart E., Herring B., Esparza J., Heyward W. L., Osmanov S. The evolving molecular epidemiology of HIV-1 envelope subtypes in injecting drug users in Bangkok, Thailand: implications for HIV vaccine trials. AIDS. 9:1995;851-857.
17. Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order in Hominoidea. J. Mol. Evol. 4:1989;406-425.
18. Kleim J.-P., Ackerman A., Brackman H. H., Gahr M., Schneweis K. E. Epidemiologically closely related viruses from hemophilia B patients display high homology in two hypervariable regions of the HIV-1env. AIDS Res. Hum. Retroviruses. 7:1991;417-421.
19. Kuiken C. L., Zwart G., Baan E., Coutinho R. A., van den Hoek J. A. R., Goudsmit J. Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic. Proc. Natl. Acad. Sci. USA. 90:1993;9061-9065.
20. Kuiken C. L., Cornelissen M. T., Zorgdrager F., Hartman S., Gibbs A. J., Goudsmit J. Consistent risk group-associated differences in human immunodeficiency virus type 1 vpr, vpu and V3 sequences despite independent evolution. J. Gen. Virol. 77:1996;783-792.
21. Kuiken C. L., Goudsmit J. Silent mutation pattern in V3 sequences distinguishes virus according to risk group in Europe. AIDS Res. Hum. Retroviruses. 10:1994;319-320.
22. Kunanusont C., Foy H. M., Kreiss J. K., Rerks-Ngarm S., Phanuphak P., Raktham S., Pau C. P., Young N. L. HIV-1 subtypes and male-to-female transmission in Thailand. Lancet. 345:1995;1078-1083.
23. Kusumi K., Conway B., Cunningham S., Berson A., Evans C., Iversen A. K., Colvin D., Gallo M. V., Coutre S., Shaper E. G., Faulkner D. V., DeRonde A., Volkman S., Williams C., Hirsch M. S., Mullins J. I. Human immunodeficiency virus type 1 envelope gene structure and diversity in vivo and after cocultivation in vitro. J. Virol. 66:1992;875-885.
24. Leigh Brown A., Monaghan P. Evolution of the structural proteins of human immunodeficiency virus: selective constraints on nucleotide substitution. AIDS Res. Hum. Retroviruses. 4:1988;399-407.
25. A. J. Leigh Brown, P. Simmonds, 1995, HIV: a practical approach; Volume 1, Virology and Immunology, 161, 188, Oxford University Press, Oxford.
26. Leitner T., Escanilla D., Franzen C., Uhlen M., Albert J. Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis. Proc. Natl. Acad. Sci. USA. 93:1996;10864-10869.
27. McCutchan F. E., Hegerich P. A., Brennan T. P., Phanuphak P., Singharaj P., Jugsudee A., Berman P. W., Gray A. M., Fowler A. K., Burke D. S. Genetic variants of HIV-1 in Thailand. AIDS Res. Hum. Retroviruses. 8:1992;1887-1895.
28. Meyerhans A., Cheynier R., Albert J., Seth M., Kwok S., Sninsky J., Morfeldt Manson L., Asjo B., Wain-Hobson S. Temporal fluctuations in HIV quasispecies in vivo are not reflected by sequential HIV isolations. Cell. 58:1989;901-910.
29. G. Myers, B. Korber, B. H. Hahn, K. T. Jeang, J. W. Mellors, F. E. McCutchan, L. E. Henderson, G. N. Pavlakis, 1995, Human retroviruses and AIDS 1995, Los Alamos National Laboratory.
30. Ou C. Y., Ciesielski C. A., Myers G., Bandea C. I., Luo C. C., Korber B. T., Mullins J. I., Schochetman G., Berkelman R. L., Economou A. N., Witte J. J., Furman L. J., Satten G. A., MacInnes K. A., Curran J. W., Jaffe H. W. Molecular epidemiology of HIV transmission in a dental practice. Science. 256:1992;1165-1171.
31. Ou C. Y., Takebe Y., Weniger B. G., Luo C. C., Kalish M. L., Auwanit W., Yamazaki S., Gayle H. D., Young N. I., Schochetman G. Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand. Lancet. 341:1993;1171-1174.
32. Pfutzner A., Dietrich U., von Eichel U., von Briesen H., Brede H. D., Maniar J. K., Rubsamen Waigmann H. HIV-1 and HIV-2 infections in a high risk population in Bombay, India: evidence for the spread of HIV-2 and presence of a divergent HIV-1 subtype. J. Acquir. Immune. Defic. Syndr. 5:1992;972-977.
33. Robertson J. R., Bucknall A. B. V., Welsby P. D., Roberts J. J. K., Inglis J. M., Peutherer J. F., Brettle R. P. Epidemic of AIDS related virus (HTLV-III/LAV) among intravenous drug abusers. Br. Med. J. 292:1986;527-529.
34. Rogers A. S., Froggatt J. W. III, Townsend T., Gordon T., Leigh Brown A. J., Holmes E. C., Zhang L. Q., Moses H. III. An investigation of potential HIV transmission to the patients of an HIV-infected surgeon. J. Am. Med. Assoc. 269:1993;1795-1801.
35. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
36. Simmonds P., Balfe P., Peutherer J. F., Ludlam C. A., Bishop J. O., Leigh Brown A. J. Human immunodeficiency virus-infected individuals contain provirus in small numbers of peripheral mononuclear cells and at low copy numbers. J. Virol. 64:1990;864-872.
37. Smith S. W., Overbeek R., Woese C. R., Gilbert W., Gillevet P. M. The genetic data environment and expandable GUI for multiple sequence analysis. Comput. Appl. Biosci. 10:1994;671-675.
38. Staden R. Staden package update. Genome News. 13:1993;12-13.
39. Taylor A., Goldberg D., Emslie J., Wrench J., Gruer L., Camerson S., Black J., Davis B., McGregor J., Follett E., Harvey J., Basson J., McGavigan J. Outbreak of HIV infection in a Scottish prison. Br. Med. J. 310:1995;289-292.
40. van Haastrecht H. J. A., van den Hoek J. A. R., Mientjes G. H., Coutinho R. A. Did the introduction of HIV among homosexual men precede the introduction among injecting drug users in the Netherlands. AIDS. 6:1991;131-132.
41. Weniger B. G., Limpakarnjanarat K., Ungchusak K., Thanprasertsuk S., Choopanya K., Vanichseni S., Uneklabh T., Thongcharoen P., Wasi C. AIDS 1991 - A year in review. AIDS 5. 1992;Current Science, London. p. S71-S85.
42. Weniger B. G., Takebe Y., Ou C. Y., Yamazaki S. The molecular epidemiology of HIV in Asia. AIDS. 8:1994;S13-S28.
43. Yirrell D., Robertson P., Cameron S., Goldberg D., Leigh Brown A. J. Molecular epidemiology of an HIV-1 outbreak in a Scottish prison. Br. Med. J. 314:1997;1446-1450.
44. Zhang L. Q., MacKenzie P., Cleland A., Holmes E. C., Leigh Brown A. J., Simmonds P. Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection. J. Virol. 67:1993;3345-3356.
45. Zhu T., Mo H., Wang N., Nam D. S., Cao Y., Koup R. A., Ho D. D. Genotypic and phenotypic characterization of HIV-1 in patients with primary infection. Science. 261:1993;1179-1181.