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Volumn 7, Issue , 2006, Pages

Classification of protein quaternary structure by functional domain composition

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID COMPOSITIONS; CROSS-VALIDATION TESTS; FUNCTIONAL DOMAINS; HIGH-THROUGHPUT METHOD; NEAREST NEIGHBOR ALGORITHM; OLIGOMERIC PROTEINS; PROTEIN QUATERNARY STRUCTURE; QUATERNARY STRUCTURE;

EID: 33646180187     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-187     Document Type: Article
Times cited : (29)

References (38)
  • 1
    • 0000986242 scopus 로고
    • Quaternary structure of proteins
    • Edited by: Neurath H and Hill RL. New York, Academic Press
    • Klotz IM, Darnall DW, Langerman NR: Quaternary structure of proteins. In The Proteins Volume I. Edited by: Neurath H and Hill RL. New York, Academic Press; 1975:293-411.
    • (1975) The Proteins , vol.1 , pp. 293-411
    • Klotz, I.M.1    Darnall, D.W.2    Langerman, N.R.3
  • 3
    • 0346252360 scopus 로고    scopus 로고
    • Classification of protein quaternary structure with support vector machine
    • Zhang SW, Pan Q, Zhang HC, Zhang YL, Wang HY: Classification of protein quaternary structure with support vector machine. Bioinformatics 2003, 19:2390-2396.
    • (2003) Bioinformatics , vol.19 , pp. 2390-2396
    • Zhang, S.W.1    Pan, Q.2    Zhang, H.C.3    Zhang, Y.L.4    Wang, H.Y.5
  • 5
    • 0030900731 scopus 로고    scopus 로고
    • Stoichiometry and assembly of a recombinant GABAA receptor subtype
    • Tretter V, Ehya N, Fuchs K, Sieghart W: Stoichiometry and assembly of a recombinant GABAA receptor subtype. J Neurosci 1997, 17:2728-2737.
    • (1997) J Neurosci , vol.17 , pp. 2728-2737
    • Tretter, V.1    Ehya, N.2    Fuchs, K.3    Sieghart, W.4
  • 6
    • 0031874403 scopus 로고    scopus 로고
    • Determination of protein-protein interactions by matrix-assisted laser desorption/ionization mass spectrometry
    • Farmer TB, Caprioli RM: Determination of protein-protein interactions by matrix-assisted laser desorption/ionization mass spectrometry. J Mass Spectrom 1998, 33:697-704.
    • (1998) J Mass Spectrom , vol.33 , pp. 697-704
    • Farmer, T.B.1    Caprioli, R.M.2
  • 7
    • 0002101049 scopus 로고
    • Assembly of multi-subunit structures
    • (ed RH Pain) New York, Oxford University Press
    • Price NC: Assembly of multi-subunit structures. In Mechanisms of protein folding (ed RH Pain) New York, Oxford University Press; 1994:160-193.
    • (1994) Mechanisms of Protein Folding , pp. 160-193
    • Price, N.C.1
  • 9
    • 0141815538 scopus 로고    scopus 로고
    • Predicting protein quaternary structure by pseudo amino acid composition
    • Chou KC, Cai YD: Predicting protein quaternary structure by pseudo amino acid composition. Proteins 2003, 53:282-289.
    • (2003) Proteins , vol.53 , pp. 282-289
    • Chou, K.C.1    Cai, Y.D.2
  • 10
    • 0015859467 scopus 로고
    • Principles that govern the folding of protein chains
    • Anfinsen CB: Principles that govern the folding of protein chains. Science 1973, 181:223-230.
    • (1973) Science , vol.181 , pp. 223-230
    • Anfinsen, C.B.1
  • 11
    • 67349189383 scopus 로고
    • The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain
    • Anfinsen CB, Haber E, Sela M, White FHJ: The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain. Proc Natl Acad Sci U S A 1961, 47:1309-1314.
    • (1961) Proc Natl Acad Sci U S A , vol.47 , pp. 1309-1314
    • Anfinsen, C.B.1    Haber, E.2    Sela, M.3    White, F.H.J.4
  • 12
    • 0034954937 scopus 로고    scopus 로고
    • Prediction of quaternary structure from primary structure
    • Garian R: Prediction of quaternary structure from primary structure. Bioinformatics 2001, 17:55 1-556.
    • (2001) Bioinformatics , vol.17 , Issue.55 , pp. 551-556
    • Garian, R.1
  • 13
    • 4043098299 scopus 로고    scopus 로고
    • Accurate classification of homodimeric vs other homooligomeric proteins using a new measure of information discrepancy
    • Song J, Tang H: Accurate classification of homodimeric vs other homooligomeric proteins using a new measure of information discrepancy. J Chem Inf Comput Sci 2004, 44:1324-1327.
    • (2004) J Chem Inf Comput Sci , vol.44 , pp. 1324-1327
    • Song, J.1    Tang, H.2
  • 14
    • 0035224503 scopus 로고    scopus 로고
    • Protein-protein interaction map inference using interacting domain profile pairs
    • Wojcik J, Schachter V: Protein-protein interaction map inference using interacting domain profile pairs. Bioinformatics 2001, 17 Suppl 1:S296-305.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Wojcik, J.1    Schachter, V.2
  • 15
    • 0642343787 scopus 로고    scopus 로고
    • Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair
    • Kim WK, Park J, Suh JK: Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair. Genome Inform Ser Workshop Genome Inform 2002, 13:42-50.
    • (2002) Genome Inform Ser Workshop Genome Inform , vol.13 , pp. 42-50
    • Kim, W.K.1    Park, J.2    Suh, J.K.3
  • 16
    • 3843117638 scopus 로고    scopus 로고
    • Predicting protein structural class by functional domain composition
    • Chou KC, Cai YD: Predicting protein structural class by functional domain composition. Biochem Biophys Res Commun 2004, 321:1007-1009.
    • (2004) Biochem Biophys Res Commun , vol.321 , pp. 1007-1009
    • Chou, K.C.1    Cai, Y.D.2
  • 17
    • 3042621436 scopus 로고    scopus 로고
    • Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition
    • Cai YD, Doig AJ: Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition. Bioinformatics 2004, 20:1292-1300.
    • (2004) Bioinformatics , vol.20 , pp. 1292-1300
    • Cai, Y.D.1    Doig, A.J.2
  • 18
    • 33646165344 scopus 로고    scopus 로고
    • A novel domain-based method for predicting the functional classes of proteins
    • Yu XJ, Lin JC, Shi TL, Li YX: A novel domain-based method for predicting the functional classes of proteins. Chinese Sci Bull 2004, 49:2379-2384.
    • (2004) Chinese Sci Bull , vol.49 , pp. 2379-2384
    • Yu, X.J.1    Lin, J.C.2    Shi, T.L.3    Li, Y.X.4
  • 20
    • 0038705861 scopus 로고    scopus 로고
    • Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition
    • Cai YD, Chou KC: Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition. Biochem Biophys Res Commun 2003, 305:407-411.
    • (2003) Biochem Biophys Res Commun , vol.305 , pp. 407-411
    • Cai, Y.D.1    Chou, K.C.2
  • 21
  • 22
    • 0003607151 scopus 로고
    • Multivariate analysis
    • London, Academic Press
    • Mardia KV, Kent JT, Bibby JM: Multivariate analysis. London, Academic Press; 1979.
    • (1979)
    • Mardia, K.V.1    Kent, J.T.2    Bibby, J.M.3
  • 23
    • 0035400226 scopus 로고    scopus 로고
    • Some insights into protein structural class prediction
    • Zhou GP, Assa-Munt N: Some insights into protein structural class prediction. Proteins 2001, 44:57-59.
    • (2001) Proteins , vol.44 , pp. 57-59
    • Zhou, G.P.1    Assa-Munt, N.2
  • 24
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-Damino acid composition space
    • Chou KC: A novel approach to predicting protein structural classes in a (20-1)-Damino acid composition space. Proteins 1995, 21:319-344.
    • (1995) Proteins , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 25
    • 0029076524 scopus 로고
    • A sequence-coupled vector-projection model for predicting the specificity of GaINAc-transferase
    • Chou KC: A sequence-coupled vector-projection model for predicting the specificity of GaINAc-transferase. Protein Sci 1995, 4:1365-1383.
    • (1995) Protein Sci , vol.4 , pp. 1365-1383
    • Chou, K.C.1
  • 26
    • 0028239038 scopus 로고
    • Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies
    • Nakashima H, Nishikawa K: Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies. J Mol Biol 1994, 238:54-61.
    • (1994) J Mol Biol , vol.238 , pp. 54-61
    • Nakashima, H.1    Nishikawa, K.2
  • 27
    • 0034843744 scopus 로고    scopus 로고
    • Support vector machine approach for protein subcellular localization prediction
    • Hua S, Sun Z: Support vector machine approach for protein subcellular localization prediction. Bioinformatics 2001, 17:721-728.
    • (2001) Bioinformatics , vol.17 , pp. 721-728
    • Hua, S.1    Sun, Z.2
  • 28
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • Chou KC, Cai YD: Using functional domain composition and support vector machines for prediction of protein subcellular location. J Biol Chem 2002, 277:45765-45769.
    • (2002) J Biol Chem , vol.277 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 31
    • 0035072551 scopus 로고    scopus 로고
    • Clustering of highly homologous sequences to reduce the size of large protein databases
    • Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 2001, 17:282-283.
    • (2001) Bioinformatics , vol.17 , pp. 282-283
    • Li, W.1    Jaroszewski, L.2    Godzik, A.3
  • 32
    • 0043180474 scopus 로고    scopus 로고
    • PISCES: A protein sequence culling server
    • Wang G, Dunbrack RLJ: PISCES: a protein sequence culling server. Bioinformatics 2003, 19:1589-1591.
    • (2003) Bioinformatics , vol.19 , pp. 1589-1591
    • Wang, G.1    Dunbrack, R.L.J.2
  • 34
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer EL, Eddy SR, Durbin R: Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins 1997, 28:405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.1    Eddy, S.R.2    Durbin, R.3
  • 36
  • 38
    • 2442671554 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins in a hybridization space
    • Cai YD, Chou KC: Predicting subcellular localization of proteins in a hybridization space. Bioinformatics 2004, 20:1151-1156.
    • (2004) Bioinformatics , vol.20 , pp. 1151-1156
    • Cai, Y.D.1    Chou, K.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.