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33646147541
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note
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The electron density in this region is rather large, indicating that there are more water molecules (about 3 to 4). It also has high I/SigmaI values, indicating that these locations are specific.
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26
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0029033981
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While 2 has been reported to bind irreversibly to the proteasome (Fenteany, G.; Standaert, R. F.; Lane, W. S.; Choi, S.; Corey, E. J.; Schreiber, S. L. Science 1995, 268, 726), data on a closely related synthetic analogue PS-519 indicate that the binding, while covalent, is reversible, with full recovery of blood 20S proteasome activity to basal levels within 24 h post administration
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28
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0036280356
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In studies of β-lactone inhibitors of serine proteases, it has been suggested that the initial acyl-enzyme intermediate formation may be largely driven by relief of the high strain energy of the β-lactone ring and that the putative tetrahedral intermediate may not be stabilized by an oxyanion hole, i.e., may not be enzymatically driven (Kim, D.; Park, J.; Chung, S. J.; Park, J. D.; Park, N.; Han, J. H. Bioorg. Med. Chem. 2002, 10, 2553). Reformation of the β-lactone ring would require overcoming a high energy barrier. Although this might be enzymatically catalyzed, once reformed, it would be expected to once again react quickly with the ThrOγ nucleophile.
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0032561773
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A similar mechanism has been proposed for the inhibition of serine proteases. See Li, Z.; Bulychev, A.; Kotra, L. P.; Massova, I.; Mobashery, S. J. Am. Chem. Soc. 1998, 120, 13003.
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30
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33646162131
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note
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6 which may be partially attributed to enhanced membrane permeability.
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31
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33646162605
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note
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Because 2 does not bind to β1 and β2 in the crystal structure, our discussions are focused on β5.
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32
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33646143952
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note
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A structural superposition of a yeast wild-type core particle and bovine liver core particle shows a near perfect fit, validating structural comparisons of yeast and mammalian proteasome structures.
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34
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0031059866
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Processing of x-ray diffraction data collected in oscillation mode
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Carter, C. W., Jr., Sweet, R. M., Eds.; Methods in Enzymology; Academic Press: New York
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