Identification of new central nervous system specific mouse microRNAs

FEBS Letters

Volumn 580, Issue 9, 2006, Pages 2195-2200

  Wheeler, Guy ^a   Ntounia Fousara, Sofia ^a   Granda, Begona ^a   Rathjen, Tina ^a   Dalmay, Tamas ^a  

^a UNIVERSITY OF EAST ANGLIA   (United Kingdom)

Author keywords

Asymmetrical miRNA expression; In situ hybridisation; MicroRNA; Mouse brain; RNAi

Indexed keywords

MICRORNA;

ARTICLE; BRAIN; BRAIN TISSUE; CENTRAL NERVOUS SYSTEM; EMBRYO DEVELOPMENT; GENE EXPRESSION; GENE IDENTIFICATION; GENE LIBRARY; HAND; LIMB BUD; MOLECULAR CLONING; PRIORITY JOURNAL; SPINAL CORD;

ANIMALS; BRAIN; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE SILENCING; LIMB BUD; MICE; MICRORNAS; ORGAN SPECIFICITY; SPINAL CORD;

METAZOA;

EID: 33645968725     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2006.03.019     Document Type: Article

References (26)

1. Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116 (2004) 281-297
2. Hutvagner G., McLachlan J., Pasquinelli A.E., Balint E., Tuschl T., and Zamore P.D. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293 (2001) 834-838
3. Schwarz D.S., Hutvagner G., Du T., Xu Z., Aronin N., and Zamore P.D. Asymmetry in the assembly of the RNAi enzyme complex. Cell 115 (2003) 199-208
4. Olsen P.H., and Ambros V. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev. Biol. 216 (1999) 671-680
5. Yekta S., Shih I.H., and Bartel D.P. MicroRNA-directed cleavage of HOXB8 mRNA. Science 304 (2004) 594-596
6. Griffiths-Jones S. The microRNA registry. Nucleic Acids Res. 32 (2004) D109-D111
7. Lagos-Quintana M., Rauhut R., Lendeckel W., and Tuschl T. Identification of novel genes coding for small expressed RNAs. Science 294 (2001) 853-858
8. Mourelatos Z., Dostie J., Paushkin S., Sharma A., Charroux B., Abel L., Rappsilber J., Mann M., and Dreyfuss G. miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev. 16 (2002) 720-728
9. Lagos-Quintana M., Rauhut R., Yalcin A., Meyer J., Lendeckel W., and Tuschl T. Identification of tissue-specific microRNAs from mouse. Curr. Biol. 12 (2002) 735-739
10. Lagos-Quintana M., Rauhut R., Meyer J., Borkhardt A., and Tuschl T. New microRNAs from mouse and human. RNA 9 (2003) 175-179
11. Houbaviy H.B., Murray M.F., and Sharp P.A. Embryonic stem cell-specific MicroRNAs. Dev. Cell 5 (2003) 351-358
12. Michael M.Z., O' Connor S.M., van Holst Pellekaan N.G., Young G.P., and James R.J. Reduced accumulation of specific microRNAs in colorectal neoplasia. Mol. Cancer Res. 1 (2003) 882-891
13. Dostie J., Mourelatos Z., Yang M., Sharma A., and Dreyfuss G. Numerous microRNPs in neuronal cells containing novel microRNAs. RNA 9 (2003) 180-186
14. Krichevsky A.M., King K.S., Donahue C.P., Khrapko K., and Kosik K.S. A microRNA array reveals extensive regulation of microRNAs during brain development. RNA 9 (2003) 1274-1281
15. Kim J., Krichevsky A., Grad Y., Hayes G.D., Kosik K.S., Church G.M., and Ruvkun G. Identification of many microRNAs that copurify with polyribosomes in mammalian neurons. Proc. Natl. Acad. Sci. USA 10 (2004) 360-365
16. Elbashir S.M., Lendeckel W., and Tuschl T. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev. 15 (2001) 188-200
17. Mathews D.H., Sabina J., Zuker M., and Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288 (1999) 911-940
18. Wienholds E., Kloosterman W.P., Miska E., Alvarez-Saavedra E., Berezikov E., de Bruijn E., Horvitz H.R., Kauppinen S., and Plasterk R.H. MicroRNA expression in zebrafish embryonic development. Science 309 (2005) 310-311
19. Valoczi A., Hornyik C., Varga N., Burgyan J., Kauppinen S., and Havelda Z. Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes. Nucleic Acids Res. 32 (2004) e175
20. Sewer A., Paul N., Landgraf P., Aravin A., Pfeffer S., Brownstein M.J., Tuschl T., van Nimwegen E., and Zavolan M. Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics 6 (2005) 267
21. Altuvia Y., Landgraf P., Lithwick G., Elefant N., Pfeffer S., Aravin A., Brownstein M.J., Tuschl T., and Margalit H. Clustering and conservation patterns of human microRNAs. Nucleic Acids Res. 33 (2005) 2697-2706
22. Bentwich I., Avniel A., Karov Y., Aharonov R., Gilad S., Barad O., Barzilai A., Einat P., Einav U., Meiri E., Sharon E., Spector Y., and Bentwich Z. Identification of hundreds of conserved and non-conserved human microRNAs. Nat. Genet. 37 (2005) 766-770
23. Kloosterman W.P., Wienholds E., de Bruijn E., Kauppinen S., and Plasterk R.H. In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes. Nat. Methods 3 (2006) 27-29
24. Lu C., Tej S.S., Luo S., Haudenschild C.D., Meyers B.C., and Green P.J. Elucidation of the small RNA component of the transcriptome. Science 309 (2005) 1567-1569
25. Sempere L.F., Freemantle S., Pitha-Rowe I., Moss E., Dmitrovsky E., and Ambros V. Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation. Genome Biol. 5 (2004) R13
26. Chang S., Johnston Jr. R.J., Frokjaer-Jensen C., Lockery S., and Hobert O. MicroRNAs act sequentially and asymmetrically to control chemosensory laterality in the nematode. Nature 430 (2004) 785-789