Probing the transition state ensemble of a protein folding reaction by pressure-dependent nmr relaxation dispersion

Journal of the American Chemical Society

Volumn 128, Issue 15, 2006, Pages 5262-5269

  Korzhnev, Dmitry M ^a,b   Bezsonova, Irina ^b   Evanics, Ferenc ^b   Taulier, Nicolas ^b   Zhou, Zheng ^c   Bai, Yawen ^c   Chalikian, Tigran V ^b   Prosser, R Scott ^b   Kay, Lewis E ^a,b  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPRESSIBILITY; ENTROPY; FREE ENERGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHASE EQUILIBRIA; WATER;

RELAXATION DISPERSION; TRANSITION STATE ENSEMBLE (TSE); VOLUMETRIC PARAMETERS;

PROTEINS;

ADENINE; APOCYTOCHROME B; APOPROTEIN; CYTOCHROME B; GUANINE; MUTANT PROTEIN; UNCLASSIFIED DRUG; WATER;

ARTICLE; CALCULATION; COMPRESSION; ENERGY; HYDRATION; ISOTHERM; KINETICS; NITROGEN NUCLEAR MAGNETIC RESONANCE; PARAMETER; PRESSURE; PROTEIN FOLDING; PROTEIN UNFOLDING; REACTION ANALYSIS; REACTION TIME; VOLUMETRY;

CYTOCHROMES B; KINETICS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PRESSURE; PROTEIN FOLDING;

EID: 33645907393     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0601540     Document Type: Article

References (37)

1. Dinner, A. R.; Sali, A.; Smith, L. J.; Dobson, C. M.; Karplus, M. Trends Biochem. Sci. 2000, 25, 331-339.
2. Shortle, D. Curr. Opin. Struct. Biol. 1996, 6, 24-30.
3. Feng, H.; Zhou, Z.; Bai, Y. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 5026-5031.
4. Fersht, A. Structure and Mechanism in Protein Science; W. H. Freeman and Company: New York, 1999.
5. Dyson, H. J.; Wright, P. E. Chem. Rev. 2004, 104, 3607-3622.
6. Dyson, H. J.; Wright, P. E. Methods Enzymol. 2005, 394, 299-321.
7. Bai, Y.; Sosnick, T. R.; Mayne, L.; Englander, S. W. Science 1995, 269, 192-197.
8. Matouschek, A.; Kellis, J. T., Jr.; Serrano, L.; Fersht, A. R. Nature 1989, 340, 122-126.
9. Vendruscolo, M.; Paci, E.; Dobson, C. M.; Karplus, M. Nature 2001, 409, 641-645.
10. Seemann, H.; Winter, R.; Royer, C. A. J. Mol. Biol. 2001, 307, 1091-1102.
11. Fuentes, E. J.; Wand, A. J. Biochemistry 1998, 37, 9877-9883.
12. Prehoda, K. E.; Mooberry, E. S.; Markley, J. L. Biochemistry 1998, 37, 5785-5790.
13. Pappenberger, G.; Saudan, C.; Becker, M.; Merbach, A. E.; Kiefhaber, T. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 17-22.
14. Akasaka, K.; Li, H. Biochemistry 2001, 40, 8665-8671.
15. Akasaka, K. Biochemistry 2003, 42, 10875-10885.
16. Taulier, N.; Chalikian, T. V. Biochim. Biophys. Acta 2002, 1595, 48-70.
17. Chalikian, T. V. Annu. Rev. Biophys. Biomol. Struct. 2003, 32, 207-235.
18. Taulier, N.; Chalikian, T. V. J. Mol. Biol. 2001, 314, 873-889.
19. Palmer, A. G.; Kroenke, C. D.; Loria, J. P. Methods Enzymol. 2001, 339, 204-238.
20. Korzhnev, D. M.; Salvatella, X.; Vendruscolo, M.; Di Nardo, A. A.; Davidson, A. R.; Dobson, C. M.; Kay, L. E. Nature 2004, 430, 586-590.
21. Choy, W. Y.; Zhou, Z.; Bai, Y.; Kay, L. E. J. Am. Chem. Soc. 2005, 127, 5066-5072.
22. Chu, R.; Takei, J.; Knowlton, J. R.; Andrykovitch, M.; Pei, W.; Kajava, A. V.; Steinbach, P. J.; Ji, X.; Bai, Y. J. Mol. Biol. 2002, 525, 253-262.
23. Chu, R.; Pei, W.; Takei, J.; Bai, Y. Biochemistry 2002, 41, 7998-8003.
24. Tollinger, M.; Skrynnikov, N. R.; Mulder, F. A. A.; Forman-Kay, J. D.; Kay, L. E. J. Am. Chem. Soc. 2001, 123, 11341-11352.
25. Orekhov, V. Y.; Ibraghimov, I. V.; Billeter, M. J. Biomol. NMR 2001, 20, 49-60.
26. Korzhnev, D. M.; Ibraghimov, I. V.; Billeter, M.; Orekhov, V. Y. J. Biomol. NMR 2001, 21, 263-268.
27. Korzhnev, D. M.; Kloiber, K.; Kay, L. E. J. Am. Chem. Soc. 2004, 126, 7320-7329.
28. Press, W. H.; Flannery, B. P.; Teukolsky, S. A.; Vetterling, W. T. Numerical Recipes in C; Cambridge University Press: Cambridge, 1988.
29. Hagen, S. J.; Hofrichter, J.; Szabo, A.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 11615-11617.
30. Kupke, D. W. In Physical Principles and Techniques of Protein Chemistry; Loch, S. J., Ed.; Academic Press: New York, 1973; pp 1-75.
31. Tamura, Y.; Gekko, K. Biochemistry 1995, 34, 1878-1884.
32. Kamiyama, T.; Gekko, K. Chem. Lett. 1997, 1063-1064.
33. Chalikian, T. V.; Filfil, R. Biophys. Chem. 2003, 104, 489-499.
34. Chalikian, T. V.; Gindikin, V. S.; Breslauer, K. J. J. Mol. Biol. 1995, 250, 291-306.
35. Weber, G.; Drickamer, H. G. Q. Rev. Biophys. 1983, 16, 89-112.
36. Feng, H.; Vu, N. D.; Zhou, Z.; Bai, Y. Biochemistry 2004, 43, 14325-14331.
37. Shea, J, E.; Onuchic, J. N.; Brooks, C. L., III. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 16064-16068.