-
2
-
-
0029144073
-
Hydrostatic and osmotic pressure as tools to study macromolecular recognition
-
Robinson C.R., Sligar S.G. Hydrostatic and osmotic pressure as tools to study macromolecular recognition. Methods Enzymol. 259:1995;395-427.
-
(1995)
Methods Enzymol.
, vol.259
, pp. 395-427
-
-
Robinson, C.R.1
Sligar, S.G.2
-
3
-
-
0031714901
-
Protein structure and dynamics at high pressure
-
Heremans K., Smeller L. Protein structure and dynamics at high pressure. Biochim. Biophys. Acta. 1386:1998;353-370.
-
(1998)
Biochim. Biophys. Acta
, vol.1386
, pp. 353-370
-
-
Heremans, K.1
Smeller, L.2
-
4
-
-
0035478292
-
Pressure provides new insights into protein folding, dynamics and structure
-
Silva J.L., Foguel D., Royer C.A. Pressure provides new insights into protein folding, dynamics and structure. Trends Biochem. Sci. 26:2001;612-618.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 612-618
-
-
Silva, J.L.1
Foguel, D.2
Royer, C.A.3
-
5
-
-
0017429069
-
Areas, volumes packing and protein structure
-
Richards F.M. Areas, volumes packing and protein structure. Annu. Rev. Biophys. Bioeng. 6:1977;151-176.
-
(1977)
Annu. Rev. Biophys. Bioeng.
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
6
-
-
0021195067
-
Amino acid, peptide and protein volume in solution
-
Zamyatnin A.A. Amino acid, peptide and protein volume in solution. Annu. Rev. Biophys. Bioeng. 13:1984;145-165.
-
(1984)
Annu. Rev. Biophys. Bioeng.
, vol.13
, pp. 145-165
-
-
Zamyatnin, A.A.1
-
7
-
-
0031790423
-
Thermodynamic analysis of biomolecules: A volumetric approach
-
Chalikian T.V., Breslauer K.J. Thermodynamic analysis of biomolecules: a volumetric approach. Curr. Opin. Struct. Biol. 8:1998;657-664.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 657-664
-
-
Chalikian, T.V.1
Breslauer, K.J.2
-
8
-
-
0030034601
-
Compressibility as a means to detect and characterize globular protein states
-
Chalikian T.V., Breslauer K.J. Compressibility as a means to detect and characterize globular protein states. Proc. Natl. Acad. Sci. USA. 93:1996;1012-1014.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1012-1014
-
-
Chalikian, T.V.1
Breslauer, K.J.2
-
10
-
-
0000725483
-
Thermodynamic fluctuations in protein molecules
-
Cooper A. Thermodynamic fluctuations in protein molecules. Proc. Natl. Acad. Sci. USA. 73:1976;2740-2741.
-
(1976)
Proc. Natl. Acad. Sci. USA
, vol.73
, pp. 2740-2741
-
-
Cooper, A.1
-
11
-
-
0021726687
-
Protein fluctuations and the thermodynamic uncertainty principle
-
Cooper A. Protein fluctuations and the thermodynamic uncertainty principle. Prog. Biophys. Molec. Biol. 44:1984;181-214.
-
(1984)
Prog. Biophys. Molec. Biol.
, vol.44
, pp. 181-214
-
-
Cooper, A.1
-
12
-
-
0033934245
-
Pressure-induced local unfolding of the Ras binding domain of RalGDS
-
Inoue K., Yamada H., Akasaka K., et al. Pressure-induced local unfolding of the Ras binding domain of RalGDS. Nature Struct. Biol. 7:2000;547-550.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 547-550
-
-
Inoue, K.1
Yamada, H.2
Akasaka, K.3
-
13
-
-
0035856546
-
Two folded conformers of ubiquitin revealed by high-pressure NMR
-
Kitahara R., Yamada R., Akasaka K. Two folded conformers of ubiquitin revealed by high-pressure NMR. Biochemistry. 40:2001;13556-13563.
-
(2001)
Biochemistry
, vol.40
, pp. 13556-13563
-
-
Kitahara, R.1
Yamada, R.2
Akasaka, K.3
-
14
-
-
0034602677
-
Denaturant-induced movement of the transition state of protein folding revealed by high-pressure stopped-flow measurements
-
Pappenberger G., Saudan C., Becker M., Merbach A.E., Kiefhaber T. Denaturant-induced movement of the transition state of protein folding revealed by high-pressure stopped-flow measurements. Proc. Natl. Acad. Sci. USA. 97:2000;17-22.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 17-22
-
-
Pappenberger, G.1
Saudan, C.2
Becker, M.3
Merbach, A.E.4
Kiefhaber, T.5
-
15
-
-
0035912726
-
Partial molar volume, surface area and hydration changes for equilibrium unfolding and formation of aggregation transition state: High-pressure and cosolute studies on recombinant human IFN-gamma
-
Webb J.N., Webb S.D., Cleland J.L., Carpenter J.F., Randolph T.W. Partial molar volume, surface area and hydration changes for equilibrium unfolding and formation of aggregation transition state: high-pressure and cosolute studies on recombinant human IFN-gamma. Proc. Natl. Acad. Sci. USA. 98:2001;7259-7264.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7259-7264
-
-
Webb, J.N.1
Webb, S.D.2
Cleland, J.L.3
Carpenter, J.F.4
Randolph, T.W.5
-
16
-
-
0036303731
-
Water contributes actively to the rapid crossing of a protein unfolding barrier
-
Jacob M.H., Saudan C., Holtermann G., et al. Water contributes actively to the rapid crossing of a protein unfolding barrier. J. Mol. Biol. 318:2002;837-845.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 837-845
-
-
Jacob, M.H.1
Saudan, C.2
Holtermann, G.3
-
17
-
-
0025855018
-
Ultrasonic velocimetry of biological compounds
-
Sarvazyan A.P. Ultrasonic velocimetry of biological compounds. Annu. Rev. Biophys. Biophys. Chem. 20:1991;321-342.
-
(1991)
Annu. Rev. Biophys. Biophys. Chem.
, vol.20
, pp. 321-342
-
-
Sarvazyan, A.P.1
-
20
-
-
0030298077
-
On volume changes accompanying conformational transitions of biopolymers
-
Chalikian T.V., Breslauer K.J. On volume changes accompanying conformational transitions of biopolymers. Biopolymers. 39:1996;619-626.
-
(1996)
Biopolymers
, vol.39
, pp. 619-626
-
-
Chalikian, T.V.1
Breslauer, K.J.2
-
21
-
-
0002050426
-
Conformational transitions of proteins in water and in aqueous mixtures
-
S.N. Timasheff, & G.D. Fasman. New York: Marcel Dekker, Inc
-
Brandts J.F. Conformational transitions of proteins in water and in aqueous mixtures. Timasheff S.N., Fasman G.D. Structure and Stability of Biological Macromolecules. 1969;213-290 Marcel Dekker, Inc, New York.
-
(1969)
Structure and Stability of Biological Macromolecules
, pp. 213-290
-
-
Brandts, J.F.1
-
22
-
-
0001529341
-
Protein hydration and unfolding-insights from experimental partial specific volumes and unfolded protein models
-
Murphy L.R., Matubayasi N., Payne V.A., Levy R.M. Protein hydration and unfolding-insights from experimental partial specific volumes and unfolded protein models. Fold. Des. 3:1998;105-118.
-
(1998)
Fold. Des.
, vol.3
, pp. 105-118
-
-
Murphy, L.R.1
Matubayasi, N.2
Payne, V.A.3
Levy, R.M.4
-
23
-
-
0037171140
-
Revisiting volume changes in pressure-induced protein unfolding
-
Royer C.A. Revisiting volume changes in pressure-induced protein unfolding. Biochim. Biophys. Acta. 1595:2002;201-209.
-
(2002)
Biochim. Biophys. Acta
, vol.1595
, pp. 201-209
-
-
Royer, C.A.1
-
24
-
-
9444282012
-
Aqueous solutions of nonpolar gases
-
Pierotti R.A. Aqueous solutions of nonpolar gases. J. Phys. Chem. 69:1965;281-288.
-
(1965)
J. Phys. Chem.
, vol.69
, pp. 281-288
-
-
Pierotti, R.A.1
-
25
-
-
33747754400
-
A scaled particle theory of aqueous and nonaqueous solutions
-
Pierotti R.A. A scaled particle theory of aqueous and nonaqueous solutions. Chem. Rev. 76:1976;717-726.
-
(1976)
Chem. Rev.
, vol.76
, pp. 717-726
-
-
Pierotti, R.A.1
-
26
-
-
0001445637
-
Partial molar volumes of molecules of arbitrary shape and the effect of hydrogen bonding with water
-
Kharakoz D.P. Partial molar volumes of molecules of arbitrary shape and the effect of hydrogen bonding with water. J. Solution Chem. 21:1992;569-595.
-
(1992)
J. Solution Chem.
, vol.21
, pp. 569-595
-
-
Kharakoz, D.P.1
-
27
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly M.J. Solvent-accessible surfaces of proteins and nucleic acids. Science. 221:1983;709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.J.1
-
28
-
-
0000538815
-
Analytical molecular surface calculation
-
Connolly M.J. Analytical molecular surface calculation. J. Appl. Cryst. 16:1983;548-558.
-
(1983)
J. Appl. Cryst.
, vol.16
, pp. 548-558
-
-
Connolly, M.J.1
-
29
-
-
0008047756
-
Hydration of globular proteins as derived from the volume and compressibility measurements: Cross correlating thermodynamic and structural data
-
Chalikian T.V., Totrov M., Abagyan R., Breslauer K.J. Hydration of globular proteins as derived from the volume and compressibility measurements: cross correlating thermodynamic and structural data. J. Mol. Biol. 260:1996;588-603.
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 588-603
-
-
Chalikian, T.V.1
Totrov, M.2
Abagyan, R.3
Breslauer, K.J.4
-
30
-
-
0000681226
-
Relation between van der Waals and partial molar volumes of organic molecules in water
-
Edward J.T., Farrell P.G. Relation between van der Waals and partial molar volumes of organic molecules in water. Can. J. Chem. 53:1975;2965-2970.
-
(1975)
Can. J. Chem.
, vol.53
, pp. 2965-2970
-
-
Edward, J.T.1
Farrell, P.G.2
-
32
-
-
0029157429
-
Compact intermediate states in protein folding
-
Fink A.L. Compact intermediate states in protein folding. Annu. Rev. Biophys. Biomol. Struct. 24:1995;495-522.
-
(1995)
Annu. Rev. Biophys. Biomol. Struct.
, vol.24
, pp. 495-522
-
-
Fink, A.L.1
-
33
-
-
0030032461
-
The denatured state (the other half of the folding equation) and its role in protein stability
-
Shortle D. The denatured state (the other half of the folding equation) and its role in protein stability. FASEB J. 10:1996;27-34.
-
(1996)
FASEB J.
, vol.10
, pp. 27-34
-
-
Shortle, D.1
-
34
-
-
0034581327
-
Role of the molten globule state in protein folding
-
Arai M., Kuwajima K. Role of the molten globule state in protein folding. Adv. Protein Chem. 53:2000;209-282.
-
(2000)
Adv. Protein Chem.
, vol.53
, pp. 209-282
-
-
Arai, M.1
Kuwajima, K.2
-
35
-
-
0035919635
-
Persistence of native-like topology in a denatured protein in 8 M urea
-
Shortle D., Ackerman M.S. Persistence of native-like topology in a denatured protein in 8 M urea. Science. 293:2001;487-489.
-
(2001)
Science
, vol.293
, pp. 487-489
-
-
Shortle, D.1
Ackerman, M.S.2
-
36
-
-
18244364614
-
Long-range interactions within a nonnative protein
-
Klein-Seetharaman J., Oikawa M., Grimshaw S.B., et al. Long-range interactions within a nonnative protein. Science. 295:2002;1719-1722.
-
(2002)
Science
, vol.295
, pp. 1719-1722
-
-
Klein-Seetharaman, J.1
Oikawa, M.2
Grimshaw, S.B.3
-
38
-
-
0008863560
-
Some factors in the interpretation of protein denaturation
-
Kauzmann W. Some factors in the interpretation of protein denaturation. Adv. Protein Chem. 14:1959;1-63.
-
(1959)
Adv. Protein Chem.
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
39
-
-
0035924822
-
Structural thermodynamics of hydration
-
Chalikian T.V. Structural thermodynamics of hydration. J. Phys. Chem. B. 105:2001;12566-12578.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 12566-12578
-
-
Chalikian, T.V.1
-
40
-
-
0029124248
-
Molten globule and protein folding
-
Ptitsyn O.B. Molten globule and protein folding. Adv. Protein Chem. 47:1995;83-229.
-
(1995)
Adv. Protein Chem.
, vol.47
, pp. 83-229
-
-
Ptitsyn, O.B.1
-
41
-
-
0026018045
-
Isoenthalpic and isoentropic temperatures and the thermodynamics of protein denaturation
-
Lee B. Isoenthalpic and isoentropic temperatures and the thermodynamics of protein denaturation. Proc. Natl. Acad. Sci. USA. 88:1991;5154-5158.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 5154-5158
-
-
Lee, B.1
-
42
-
-
0029011017
-
Volumetric characterizations of thenative, molten globule and unfolded states of cytochrome c at acidic pH
-
Chalikian T.V., Gindikin V.S., Breslauer K.J. Volumetric characterizations of thenative, molten globule and unfolded states of cytochrome c at acidic pH. J. Mol. Biol. 250:1995;291-306.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 291-306
-
-
Chalikian, T.V.1
Gindikin, V.S.2
Breslauer, K.J.3
-
43
-
-
0030059691
-
Spectroscopic and volumetric investigation of cytochrome c unfolding at alkaline pH: Characterization of the base induced unfolded state at 25°C
-
Chalikian T.V., Gindikin V.S., Breslauer K.J. Spectroscopic and volumetric investigation of cytochrome c unfolding at alkaline pH: Characterization of the base induced unfolded state at 25°C. FASEB J. 10:1996;164-170.
-
(1996)
FASEB J.
, vol.10
, pp. 164-170
-
-
Chalikian, T.V.1
Gindikin, V.S.2
Breslauer, K.J.3
-
44
-
-
0343247668
-
The native and the heat-induced denatured states of α-chymotrypsinogen A: A thermodynamic and spectroscopic study
-
Chalikian T.V., Völker J., Anafi D., Breslauer K.J. The native and the heat-induced denatured states of α-chymotrypsinogen A: A thermodynamic and spectroscopic study. J. Mol. Biol. 274:1997;237-252.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 237-252
-
-
Chalikian, T.V.1
Völker, J.2
Anafi, D.3
Breslauer, K.J.4
-
45
-
-
0034625325
-
Volumetric and spectroscopic characterizations of the native and acid-induced denatured states of staphylococcal nuclease
-
Filfil R., Chalikian T.V. Volumetric and spectroscopic characterizations of the native and acid-induced denatured states of staphylococcal nuclease. J. Mol. Biol. 299:2000;829-844.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 829-844
-
-
Filfil, R.1
Chalikian, T.V.2
-
46
-
-
0035824880
-
Characterization of pH-induced transitions of β-lactoglobulin: Ultrasonic, densimetric and spectroscopic studies
-
Taulier N., Chalikian T.V. Characterization of pH-induced transitions of β-lactoglobulin: ultrasonic, densimetric and spectroscopic studies. J. Mol. Biol. 314:2001;873-889.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 873-889
-
-
Taulier, N.1
Chalikian, T.V.2
-
47
-
-
0031709390
-
Hydration of diglycyl tripeptides with non-polar side chains: A volumetric study
-
Chalikian T.V., Gindikin V.S., Breslauer K.J. Hydration of diglycyl tripeptides with non-polar side chains: a volumetric study. Biophys. Chem. 75:1998;57-71.
-
(1998)
Biophys. Chem.
, vol.75
, pp. 57-71
-
-
Chalikian, T.V.1
Gindikin, V.S.2
Breslauer, K.J.3
-
48
-
-
0000493265
-
The role of water in protein-ligand interactions: Volumetric characterizations of the binding of 2′-CMP and 3′-CMP to ribonuclease A
-
Dubins D.N., Filfil R. Jr., Macgregor R.B., Chalikian T.V. The role of water in protein-ligand interactions: volumetric characterizations of the binding of 2′-CMP and 3′-CMP to ribonuclease A. J. Phys. Chem. B. 104:2000;390-401.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 390-401
-
-
Dubins, D.N.1
Filfil R., Jr.2
Macgregor, R.B.3
Chalikian, T.V.4
-
49
-
-
0037470558
-
The thermodynamics of protein-protein recognition as characterized by a combination of volumetric and calorimetric techniques: The binding of turkey ovomucoid third domain to α-chymotrypsin
-
R. Filfil, T.V. Chalikian, The thermodynamics of protein-protein recognition as characterized by a combination of volumetric and calorimetric techniques: The binding of turkey ovomucoid third domain to α-chymotrypsin, J. Mol. Biol. (2003) 1271-1288.
-
(2003)
J. Mol. Biol.
, pp. 1271-1288
-
-
Filfil, R.1
Chalikian, T.V.2
-
50
-
-
0032841423
-
The hydration of nucleic acid duplexes as assessed by a combination of volumetric and structural techniques
-
Chalikian T.V., Völker J., Srinivasan A.R., Olson W.K., Breslauer K.J. The hydration of nucleic acid duplexes as assessed by a combination of volumetric and structural techniques. Biopolymers. 50:1999;459-471.
-
(1999)
Biopolymers
, vol.50
, pp. 459-471
-
-
Chalikian, T.V.1
Völker, J.2
Srinivasan, A.R.3
Olson, W.K.4
Breslauer, K.J.5
-
51
-
-
0000137680
-
Volumetric properties of nucleic acids
-
Chalikian T.V., Breslauer K.J. Volumetric properties of nucleic acids. Biopolymers. 48:1998;264-280.
-
(1998)
Biopolymers
, vol.48
, pp. 264-280
-
-
Chalikian, T.V.1
Breslauer, K.J.2
|