메뉴 건너뛰기




Volumn 12, Issue 3, 2005, Pages 211-214

HTself: Self-self based statistical test for low replication microarray studies

Author keywords

Differential gene expression; Homotypical; Low cost; Microarray; Self self; Statistical test; Web server

Indexed keywords

ARTICLE; BIOINFORMATICS; DNA DETERMINATION; DNA MICROARRAY; DNA REPLICATION; GENE EXPRESSION; GENE REPLICATION; STATISTICAL ANALYSIS;

EID: 33645841299     PISSN: 13402838     EISSN: 13402838     Source Type: Journal    
DOI: 10.1093/dnares/dsi007     Document Type: Article
Times cited : (40)

References (18)
  • 1
    • 1542613788 scopus 로고    scopus 로고
    • Confirming microarray data - Is it really necessary?
    • Rockett, J. C. and Hellmann, G. M. 2004, Confirming microarray data - is it really necessary? Genomics, 83, 541-549.
    • (2004) Genomics , vol.83 , pp. 541-549
    • Rockett, J.C.1    Hellmann, G.M.2
  • 2
    • 0036574916 scopus 로고    scopus 로고
    • Statistical issues with microarrays: Processing and analysis
    • Nadon, R. and Shoemaker, J. 2002, Statistical issues with microarrays: processing and analysis, Trends Genet., 18, 265-271.
    • (2002) Trends Genet. , vol.18 , pp. 265-271
    • Nadon, R.1    Shoemaker, J.2
  • 3
    • 0037494667 scopus 로고    scopus 로고
    • Gene selection in microarray data: The elephant, the blind men and our algorithms
    • Stolovitzky, G. 2003, Gene selection in microarray data: the elephant, the blind men and our algorithms, Curr. Opin. Struct. Biol., 13, 370-376.
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 370-376
    • Stolovitzky, G.1
  • 4
    • 0037276175 scopus 로고    scopus 로고
    • Statistical tests for differential expression in cDNA microarray experiments
    • Cui, X. and Churchill, G. A. 2003, Statistical tests for differential expression in cDNA microarray experiments, Genome Biol., 4, R210.
    • (2003) Genome Biol. , vol.4
    • Cui, X.1    Churchill, G.A.2
  • 5
    • 0037167899 scopus 로고    scopus 로고
    • Within the fold: Assessing differential expression measures and reproducibility in microarray assays
    • Yang, I. V., Chen, E., Hasseman, J. P., et al. 2002, Within the fold: assessing differential expression measures and reproducibility in microarray assays, Genome Biol., 3, R62.
    • (2002) Genome Biol. , vol.3
    • Yang, I.V.1    Chen, E.2    Hasseman, J.P.3
  • 6
    • 0037195138 scopus 로고    scopus 로고
    • Quantitative noise analysis for gene expression microarray experiments
    • Tu, Y., Stolovitzky, G., and Klein, U. 2002, Quantitative noise analysis for gene expression microarray experiments, Proc. Natl Acad. Sci. USA, 99, 14031-14036.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 14031-14036
    • Tu, Y.1    Stolovitzky, G.2    Klein, U.3
  • 7
    • 0037195198 scopus 로고    scopus 로고
    • Improved analytical methods for microarray-based genome-composition analysis
    • Kim, C. C., Joyce, E. A., Chan, K., and Falkow, S. 2002, Improved analytical methods for microarray-based genome-composition analysis, Genome Biol., 11, R65.
    • (2002) Genome Biol. , vol.11
    • Kim, C.C.1    Joyce, E.A.2    Chan, K.3    Falkow, S.4
  • 8
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V. G., Tibshirani, R., and Chu, G. 2001, Significance analysis of microarrays applied to the ionizing radiation response, Proc. Natl Acad. Sci. USA, 98, 5116-5121.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 9
    • 0036856209 scopus 로고    scopus 로고
    • Nonparametric methods for identifying differentially expressed genes in microarray data
    • Troyanskaya, O. G., Garber, M. E., Brown, P. O., Botstein, D., and Altman, R. B. 2002, Nonparametric methods for identifying differentially expressed genes in microarray data, Bioinformatics, 18, 1454-1461.
    • (2002) Bioinformatics , vol.18 , pp. 1454-1461
    • Troyanskaya, O.G.1    Garber, M.E.2    Brown, P.O.3    Botstein, D.4    Altman, R.B.5
  • 10
    • 0038053155 scopus 로고    scopus 로고
    • Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments
    • Zhao, Y. and Pan, W. 2003, Modified nonparametric approaches to detecting differentially expressed genes in replicated microarray experiments, Bioinformatics, 19, 1046-1054.
    • (2003) Bioinformatics , vol.19 , pp. 1046-1054
    • Zhao, Y.1    Pan, W.2
  • 11
    • 20944440178 scopus 로고    scopus 로고
    • Transcription profiling of signal transduction-related genes in sugarcane tissues
    • Papini-Terzi, F. S., Rocha, F. R., Vêncio, R. Z. N., et al. 2005, Transcription profiling of signal transduction-related genes in sugarcane tissues, DNA Res., 12, 27-38.
    • (2005) DNA Res. , vol.12 , pp. 27-38
    • Papini-Terzi, F.S.1    Rocha, F.R.2    Vêncio, R.Z.N.3
  • 12
    • 3843141577 scopus 로고    scopus 로고
    • DNA microarray-based genome comparison of a pathogenic and a non-pathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence
    • Koide, T., Zaini, P. A., Moreira, L. M, et al. 2004, DNA microarray-based genome comparison of a pathogenic and a non-pathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence, J. Bacteriol., 186, 5442-5449.
    • (2004) J. Bacteriol. , vol.186 , pp. 5442-5449
    • Koide, T.1    Zaini, P.A.2    Moreira, L.M.3
  • 14
    • 18244373203 scopus 로고    scopus 로고
    • Detection and normalization of biases present in spotted cDNA microarray data: A composite method addressing dye, intensity-dependent, spatially-dependent, and print-order biases
    • Uchida, S., Nishida, Y., Satou, K., Muta, S., Tashiro, K., and Kuhara, S. 2005, Detection and normalization of biases present in spotted cDNA microarray data: a composite method addressing dye, intensity-dependent, spatially-dependent, and print-order biases, DNA Res., 12, 1-7.
    • (2005) DNA Res. , vol.12 , pp. 1-7
    • Uchida, S.1    Nishida, Y.2    Satou, K.3    Muta, S.4    Tashiro, K.5    Kuhara, S.6
  • 15
    • 12344334489 scopus 로고    scopus 로고
    • DNMAD: Web-based diagnosis and normalization for microarray data
    • Vaquerizas, J. M., Dopazo, J., and Diaz-Uriarte, R. 2004, DNMAD: web-based diagnosis and normalization for microarray data, Bioinformatics, 20, 3656-3658.
    • (2004) Bioinformatics , vol.20 , pp. 3656-3658
    • Vaquerizas, J.M.1    Dopazo, J.2    Diaz-Uriarte, R.3
  • 16
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit, S., Yang, Y. H., Callow, M. J., and Speed, T. P. 2002, Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments, Statistica Sinica, 12, 111-139.
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3    Speed, T.P.4
  • 18
    • 20244377699 scopus 로고    scopus 로고
    • Whole-genome expression profiling of Xylella fastidiosa in response to growth on glucose
    • Pashalidis, S., Moreira, L. M., Zaini, P. A., et al. 2004, Whole-genome expression profiling of Xylella fastidiosa in response to growth on glucose, OMICS, 9, 77-90.
    • (2004) OMICS , vol.9 , pp. 77-90
    • Pashalidis, S.1    Moreira, L.M.2    Zaini, P.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.