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Volumn 46, Issue 3-4, 2004, Pages 72-80

Preliminary characterization of microbial communities in High Altitude Wetlands of Northwestern Argentina by determining terminal restriction fragment length polymorphisms

Author keywords

Bacterial biodiversity; High altitude wetland; Microbial community; T RFLP

Indexed keywords

RNA 16S; ARCHAEAL DNA; ARCHAEAL RNA; BACTERIAL DNA; BACTERIAL RNA; FRESH WATER; RIBOSOME DNA;

EID: 33645830274     PISSN: 01874640     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (7)

References (41)
  • 1
    • 0029663960 scopus 로고    scopus 로고
    • Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization
    • Alfreider J. P., R. Amann, B. Sattler, F. O. Glockner, A. Wille & R. Psenner. 1996. Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization. Appl. Environ. Microbiol. 62:2138-2144.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 2138-2144
    • Alfreider, J.P.1    Amann, R.2    Sattler, B.3    Glockner, F.O.4    Wille, A.5    Psenner, R.6
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig & K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0033831747 scopus 로고    scopus 로고
    • Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage
    • Bond, P. L., S. P. Smriga & J. F. Banfield. 2000. Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage. Appl Environ Microbiol. 66:3842-3849.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3842-3849
    • Bond, P.L.1    Smriga, S.P.2    Banfield, J.F.3
  • 5
    • 0031800168 scopus 로고    scopus 로고
    • Reduction of soluble iron and reductive dissolution of ferric iron-containing minerals by moderately thermophilic iron-oxidizing bacteria
    • Bridge, T. A. M., & D. B. Johnson. 1998. Reduction of soluble iron and reductive dissolution of ferric iron-containing minerals by moderately thermophilic iron-oxidizing bacteria. Appl. Environ. Microbiol. 64:2181-2186
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 2181-2186
    • Bridge, T.A.M.1    Johnson, D.B.2
  • 6
    • 0031882598 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities
    • Clement, B. G., L. E. Kehl, K. L. DeBord & C. L. Kitts. 1998. Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. J. Microbiol. Methods 31:135-142.
    • (1998) J. Microbiol. Methods , vol.31 , pp. 135-142
    • Clement, B.G.1    Kehl, L.E.2    DeBord, K.L.3    Kitts, C.L.4
  • 7
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly, V., F. A. Rainey, & E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 8
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
    • Glöckner, F. O., B. M. Fuchs & R. Amann. 1999. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721-3726.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3721-3726
    • Glöckner, F.O.1    Fuchs, B.M.2    Amann, R.3
  • 9
    • 0342940789 scopus 로고    scopus 로고
    • Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater
    • Gonzalez, J.M. & M. A. Moran. 1997. Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater. Appl Environ Microbiol. 63: 4237-4242.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4237-4242
    • Gonzalez, J.M.1    Moran, M.A.2
  • 10
    • 0032731671 scopus 로고    scopus 로고
    • Natural communities of Achromatium oxaliferum comprise genetically, morphologically, and ecologically distinct subpopulations
    • Gray N. D., R. Howarth, A. Rowan, R. W, Pickup, J. G. Jones & I. M. Head. 1999. Natural communities of Achromatium oxaliferum comprise genetically, morphologically, and ecologically distinct subpopulations. Appl Environ Microbiol. 65:5089-5099.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5089-5099
    • Gray, N.D.1    Howarth, R.2    Rowan, A.3    Pickup, R.W.4    Jones, J.G.5    Head, I.M.6
  • 11
    • 0027867928 scopus 로고
    • Limnetic macroscopic organic aggregates (lake snow): Occurrence, characteristics, and microbial dynamics in lake
    • Grossart, H. P. & M. Simon. 1993. Limnetic macroscopic organic aggregates (lake snow): occurrence, characteristics, and microbial dynamics in lake Constance. Limnol. Oceanogr. 38:532-546.
    • (1993) Constance. Limnol. Oceanogr , vol.38 , pp. 532-546
    • Grossart, H.P.1    Simon, M.2
  • 12
    • 0029780735 scopus 로고    scopus 로고
    • The phylogenetic position and ultrastructure of the uncultured bacterium Achromatium oxaliferum
    • Head, I. M., N. D. Gray, K. J. Clarke, R. W. Pickup & J. G. Jones. 1996. The phylogenetic position and ultrastructure of the uncultured bacterium Achromatium oxaliferum. Microbiology 142:2341-2354.
    • (1996) Microbiology , vol.142 , pp. 2341-2354
    • Head, I.M.1    Gray, N.D.2    Clarke, K.J.3    Pickup, R.W.4    Jones, J.G.5
  • 13
    • 34547944510 scopus 로고    scopus 로고
    • Deleted in proof
    • Deleted in proof.
  • 15
    • 0029157576 scopus 로고
    • The genus Methylophaga, a new line of descent within phylogenetic branch gamma of Proteobacteria
    • Janvier, M. & P. A. Grimont. 1995. The genus Methylophaga, a new line of descent within phylogenetic branch gamma of Proteobacteria. Res Microbiol. 146:543-550.
    • (1995) Res Microbiol , vol.146 , pp. 543-550
    • Janvier, M.1    Grimont, P.A.2
  • 16
    • 0030716777 scopus 로고    scopus 로고
    • Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes
    • Kalmbach, S., W. Manz, & U. Szewzyk. 1997. Isolation of new bacterial species from drinking water biofilms and proof of their in situ dominance with highly specific 16S rRNA probes. Appl. Environ. Microbiol. 63:4164-4170.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4164-4170
    • Kalmbach, S.1    Manz, W.2    Szewzyk, U.3
  • 17
    • 0035319323 scopus 로고    scopus 로고
    • 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM
    • Kaplan, C.W., J. C. Astaire, M. E. Sanders, B. S. Reddy & C. L. Kitts. 2001. 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 67:1935-1939.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 1935-1939
    • Kaplan, C.W.1    Astaire, J.C.2    Sanders, M.E.3    Reddy, B.S.4    Kitts, C.L.5
  • 19
    • 0035040382 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
    • Kitts, C.L. 2001. Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics. Curr. Issues Intest. Microbiol. 2:17-25.
    • (2001) Curr. Issues Intest. Microbiol , vol.2 , pp. 17-25
    • Kitts, C.L.1
  • 20
  • 21
    • 1542327668 scopus 로고    scopus 로고
    • Trends between gene content and genome size in prokaryotic species with larger genomes
    • Konstantinidis, K. T. & J. M. Tiedje. 2004. Trends between gene content and genome size in prokaryotic species with larger genomes. Proc. Natl. Acad. Sci. U S A 101:3160-3165.
    • (2004) Proc. Natl. Acad. Sci. U S A , vol.101 , pp. 3160-3165
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 22
    • 0033868844 scopus 로고    scopus 로고
    • Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae
    • Leser, T. D., R. H. Lindecrona, T. K. Jensen, B. B. Jensen & K. Møller 2000. Changes in bacterial community structure in the colon of pigs fed different experimental diets and after infection with Brachyspira hyodysenteriae. Appl. Environ. Microbiol. 66:3290-3296.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3290-3296
    • Leser, T.D.1    Lindecrona, R.H.2    Jensen, T.K.3    Jensen, B.B.4    Møller, K.5
  • 23
    • 0032882298 scopus 로고    scopus 로고
    • Microbial Diversity in Sediments Collected from the Deepest Cold-Seep Area, the Japan Trench
    • Li, L., C. Kato & K. Horikoshi. 1999 Microbial Diversity in Sediments Collected from the Deepest Cold-Seep Area, the Japan Trench. Mar. Biotechnol. 1:391-400.
    • (1999) Mar. Biotechnol , vol.1 , pp. 391-400
    • Li, L.1    Kato, C.2    Horikoshi, K.3
  • 24
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W., T. L. Marsh, H. Cheng & L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4516-4522
    • Liu, W.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 25
    • 0343503030 scopus 로고    scopus 로고
    • Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
    • Lüdemann, H., I. Arth, & W. Liesack. 2000. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl. Environ. Microbiol. 66:754-762.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 754-762
    • Lüdemann, H.1    Arth, I.2    Liesack, W.3
  • 27
    • 0027313070 scopus 로고
    • In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes
    • Manz, W., U. Szewzyk, P. Ericsson, R. Amann, K. H. Schleifer & T. Stenstrom. 1993. In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes. Appl. Environ. Microbiol. 59:2293-2298.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 2293-2298
    • Manz, W.1    Szewzyk, U.2    Ericsson, P.3    Amann, R.4    Schleifer, K.H.5    Stenstrom, T.6
  • 28
    • 0033868092 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
    • Marsh, T. L., P. Saxman, J. Cole & J. Tiedje. 2000. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl Environ Microbiol. 66:3616-3620.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3616-3620
    • Marsh, T.L.1    Saxman, P.2    Cole, J.3    Tiedje, J.4
  • 29
    • 0031860407 scopus 로고    scopus 로고
    • Beginning a molecular analysis of the eukaryal community in activated sludge
    • Marsh, T. L., W. T. Liu, L. J. Forney, & H. Cheng. 1998. Beginning a molecular analysis of the eukaryal community in activated sludge. Water Sci. Technol. 37:455-460.
    • (1998) Water Sci. Technol , vol.37 , pp. 455-460
    • Marsh, T.L.1    Liu, W.T.2    Forney, L.J.3    Cheng, H.4
  • 30
    • 34547954487 scopus 로고    scopus 로고
    • Mascitti, V. & S. Caziani. 1997 La retracción de la Laguna de los Pozuelos (Argentina) y los cambios asociados en la comunidad de aves acuáticas. In: Desarrollo Sostenible de Ecosistemas de Montaña: Manejo de áreas frágiles en los Andes, M. Liberman and C. Baied (Eds.) UNU-PL-480-321-330.
    • Mascitti, V. & S. Caziani. 1997 La retracción de la Laguna de los Pozuelos (Argentina) y los cambios asociados en la comunidad de aves acuáticas. In: Desarrollo Sostenible de Ecosistemas de Montaña: Manejo de áreas frágiles en los Andes, M. Liberman and C. Baied (Eds.) UNU-PL-480-321-330.
  • 31
    • 0035014152 scopus 로고    scopus 로고
    • Habitat changes in Laguna de Pozuelos, Jujuy, Argentina: Implications for South American Flamingo populations
    • Mascitti, V. 2001. Habitat changes in Laguna de Pozuelos, Jujuy, Argentina: Implications for South American Flamingo populations. Waterbirds 24:16-21.
    • (2001) Waterbirds , vol.24 , pp. 16-21
    • Mascitti, V.1
  • 32
    • 0027996969 scopus 로고
    • The impact of the PCR plateau phase on quantitative PCR
    • Morrison, C. & F. Gannon. (1994). The impact of the PCR plateau phase on quantitative PCR. Biochim. Biophys. Acta 1219: 493-498.
    • (1994) Biochim. Biophys. Acta , vol.1219 , pp. 493-498
    • Morrison, C.1    Gannon, F.2
  • 33
    • 0034547801 scopus 로고    scopus 로고
    • An evaluation of terminal-restriction fragment length polymorphism (TRFLP) analysis for the study of microbial community structure and dynamics
    • Osborn, A. M., E. R. B. Moore & K. N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (TRFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
    • (2000) Environ. Microbiol , vol.2 , pp. 39-50
    • Osborn, A.M.1    Moore, E.R.B.2    Timmis, K.N.3
  • 34
    • 0034071156 scopus 로고    scopus 로고
    • Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis
    • Scala, D. J., & L. J. Kerkhof. 2000. Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 66:1980-1986.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1980-1986
    • Scala, D.J.1    Kerkhof, L.J.2
  • 36
    • 0030741576 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria in activated sludge
    • Snaidr, J., R. Amann, I. Huber, W. Ludwig & K. H. Schleifer. 1997. Phylogenetic analysis and in situ identification of bacteria in activated sludge Appl. Environ. Microbiol. 63:2884-2896.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2884-2896
    • Snaidr, J.1    Amann, R.2    Huber, I.3    Ludwig, W.4    Schleifer, K.H.5
  • 37
    • 0027299353 scopus 로고
    • Probing activated sludge with oligonucleotides specific for proteobacteria: Inadequacy of culture-dependent methods for describing microbial community structure
    • Wagner, M., R. Amann, H. Lemmer & K. H. Schleifer. 1993. Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure. Appl. Environ. Microbiol. 59:1520-1525.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 1520-1525
    • Wagner, M.1    Amann, R.2    Lemmer, H.3    Schleifer, K.H.4
  • 38
    • 0025443548 scopus 로고
    • 16S rRNA sequences reveal uncultured inhabitants of a well studied thermal community
    • Ward, D. M., R. Weller, & M. M. Bateson. 1990. 16S rRNA sequences reveal uncultured inhabitants of a well studied thermal community. FEMS Microbiol. Rev. 6:105-115.
    • (1990) FEMS Microbiol. Rev , vol.6 , pp. 105-115
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 39
    • 1042267966 scopus 로고    scopus 로고
    • Methanotrophic diversity in high arctic wetlands on the islands of Svalbard (Norway)-denaturing gradient gel electrophoresis analysis of soil DNA and enrichment cultures
    • Wartiainen, I, A. G. Hestnes & M. M. Svenning. 2003. Methanotrophic diversity in high arctic wetlands on the islands of Svalbard (Norway)-denaturing gradient gel electrophoresis analysis of soil DNA and enrichment cultures. Can. J. Microbiol. 49:602-612.
    • (2003) Can. J. Microbiol , vol.49 , pp. 602-612
    • Wartiainen, I.1    Hestnes, A.G.2    Svenning, M.M.3
  • 40
    • 0031816030 scopus 로고    scopus 로고
    • Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes
    • Whitford, M. F., R. J. Forster, C. E. Beard, J. Gong & R. M. Teather. 1997. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes Anaerobe 4:153-163.
    • (1997) Anaerobe , vol.4 , pp. 153-163
    • Whitford, M.F.1    Forster, R.J.2    Beard, C.E.3    Gong, J.4    Teather, R.M.5
  • 41
    • 0036802415 scopus 로고    scopus 로고
    • Perchlorate reduction by a novel chemolithoautotrophic, hydrogen-oxidizing bacterium
    • Zhang, H., M. A. Bruns & B. E. Logan. 2002. Perchlorate reduction by a novel chemolithoautotrophic, hydrogen-oxidizing bacterium. Environ Microbiol. 4:570-576.
    • (2002) Environ Microbiol , vol.4 , pp. 570-576
    • Zhang, H.1    Bruns, M.A.2    Logan, B.E.3


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