-
1
-
-
0029644596
-
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates JR, Eng JK, McCormack AL, Schieltz D: Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal Chem 1995, 67:1426-36.
-
(1995)
Anal Chem
, vol.67
, pp. 1426-1436
-
-
Yates, J.R.1
Eng, J.K.2
McCormack, A.L.3
Schieltz, D.4
-
2
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins DN, Pappin DJ, Creasy DM, Cottrell JS: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20:3551-67.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
3
-
-
6044271269
-
Swiss-Prot: Juggling between evolution and stability
-
Bairoch A, Boeckmann B, Ferro S, Gasteiger E: Swiss-Prot: juggling between evolution and stability. Brief Bioinform 2004, 5:39-55.
-
(2004)
Brief Bioinform
, vol.5
, pp. 39-55
-
-
Bairoch, A.1
Boeckmann, B.2
Ferro, S.3
Gasteiger, E.4
-
4
-
-
0037245984
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL: GenBank. Nucleic Acids Res 2003, 31:23-7.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 23-27
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
5
-
-
0345865009
-
GenBank: Update
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL: GenBank: update. Nucleic Acids Res 2004, 32:D23-6.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
6
-
-
9144233525
-
Database resources of the National Center for Biotechnology Information: Update
-
Wheeler DL, Church DM, Edgar R, Federhen S, Helmberg W, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Suzek TO, Tatusova TA, Wagner L: Database resources of the National Center for Biotechnology Information: update. Nucleic Acids Res 2004, 32:D35-40.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Wheeler, D.L.1
Church, D.M.2
Edgar, R.3
Federhen, S.4
Helmberg, W.5
Madden, T.L.6
Pontius, J.U.7
Schuler, G.D.8
Schriml, L.M.9
Sequeira, E.10
Suzek, T.O.11
Tatusova, T.A.12
Wagner, L.13
-
7
-
-
9144233545
-
The EMBL Nucleotide Sequence Database
-
Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, van den Broek A, Cochrane G, Duggan K, Eberhardt R, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, McHale: The EMBL Nucleotide Sequence Database. Nucleic Acids Res 2004, 32:D27-30.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kulikova, T.1
Aldebert, P.2
Althorpe, N.3
Baker, W.4
Bates, K.5
Browne, P.6
van den Broek, A.7
Cochrane, G.8
Duggan, K.9
Eberhardt, R.10
Faruque, N.11
Garcia-Pastor, M.12
Harte, N.13
Kanz, C.14
Leinonen, R.15
Lin, Q.16
Lombard, V.17
Lopez, R.18
Mancuso, R.19
McHale20
more..
-
8
-
-
0347756649
-
DDBJ in the stream of various biological data
-
Miyazaki S, Sugawara H, Ikeo K, Gojobori T, Tateno Y: DDBJ in the stream of various biological data. Nucleic Acids Res 2004, 32:D31-4.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Miyazaki, S.1
Sugawara, H.2
Ikeo, K.3
Gojobori, T.4
Tateno, Y.5
-
9
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii AL, Keller A, Kolker E, Aebersold R: A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 2003, 75:4646-58.
-
(2003)
Anal Chem
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.L.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
10
-
-
0037108887
-
Empirical statististical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller A, Nesvizhskii AL, Kolker E, Aebersold R: Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 2002, 74:5383-92.
-
(2002)
Anal Chem
, vol.74
, pp. 383-392
-
-
Keller, A.1
Nesvizhskii, A.L.2
Kolker, E.3
Aebersold, R.4
-
11
-
-
0037337307
-
A systematic approach to modeling, capturing, and disseminating proteomics experimental data
-
Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR, Brass A: A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Nat Biotechnol 2003, 21:247-54.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 247-254
-
-
Taylor, C.F.1
Paton, N.W.2
Garwood, K.L.3
Kirby, P.D.4
Stead, D.A.5
Yin, Z.6
Deutsch, E.W.7
Selway, L.8
Walker, J.9
Riba-Garcia, I.10
Mohammed, S.11
Deery, M.J.12
Howard, J.A.13
Dunkley, T.14
Aebersold, R.15
Kell, D.B.16
Lilley, K.S.17
Roepstorff, P.18
Yates, J.R.19
Brass, A.20
more..
-
12
-
-
23944526367
-
PRIDE: The proteomics identifications database
-
Martens L, Hermjakob H, Jones P, Adamski M, Taylor C, States D, Gevaert K, Vandekerckhove J, Apweiler R: PRIDE: the proteomics identifications database. Proteomics 2005, 5:3537-45.
-
(2005)
Proteomics
, vol.5
, pp. 3537-3545
-
-
Martens, L.1
Hermjakob, H.2
Jones, P.3
Adamski, M.4
Taylor, C.5
States, D.6
Gevaert, K.7
Vandekerckhove, J.8
Apweiler, R.9
-
13
-
-
20144381803
-
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
-
Desiere F, Deutsch EW, Nesvizhskii AL, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings D: Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biol 2005, 6:R9.
-
(2005)
Genome Biol
, vol.6
-
-
Desiere, F.1
Deutsch, E.W.2
Nesvizhskii, A.L.3
Mallick, P.4
King, N.L.5
Eng, J.K.6
Aderem, A.7
Boyle, R.8
Brunner, E.9
Donohoe, S.10
Fausto, N.11
Hafen, E.12
Hood, L.13
Katze, M.G.14
Kennedy, K.A.15
Kregenow, F.16
Lee, H.17
Lin, B.18
Martin, D.19
Ranish, J.A.20
Rawlings, D.21
more..
-
14
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
15
-
-
0036523840
-
Proteomic 2DE database for spot selection, automated annotation, and data analysis
-
Malmström L, Malmström J, Marko-Varga G, Westergren-Thorsson G: Proteomic 2DE database for spot selection, automated annotation, and data analysis. J Proteome Res 2002, 1:135-8.
-
(2002)
J Proteome Res
, vol.1
, pp. 135-138
-
-
Malmström, L.1
Malmström, J.2
Marko-Varga, G.3
Westergren-Thorsson, G.4
-
16
-
-
9144228659
-
Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry: Mapping the nuclear proteome of human fibroblasts
-
Malmstrom J, Larsen K, Malmstrom L, Tufvesson E, Parker K, Marchese J, Williamson B, Patterson D, Martin S, Juhasz P, Westergren-Thorsson G, Marko-Varga G: Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry: Mapping the nuclear proteome of human fibroblasts. Electrophoresis 2003, 24:3806-14.
-
(2003)
Electrophoresis
, vol.24
, pp. 3806-3814
-
-
Malmstrom, J.1
Larsen, K.2
Malmstrom, L.3
Tufvesson, E.4
Parker, K.5
Marchese, J.6
Williamson, B.7
Patterson, D.8
Martin, S.9
Juhasz, P.10
Westergren-Thorsson, G.11
Marko-Varga, G.12
-
17
-
-
2642524382
-
Transforming growth factor-beta I specifically induce proteins involved in the myofibroblast contractile apparatus
-
Malmström J, Lindberg H, Lindberg C, Bratt C, Wieslander E, Delander EL, SÃrnstrand B, Burns JS, Mose-Larsen P, Fey S, Marko-Varga G: Transforming growth factor-beta I specifically induce proteins involved in the myofibroblast contractile apparatus. Mol Cell Proteomics 2004, 3:466-77.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 466-477
-
-
Malmström, J.1
Lindberg, H.2
Lindberg, C.3
Bratt, C.4
Wieslander, E.5
Delander, E.L.6
SÃrnstrand, B.7
Burns, J.S.8
Mose-Larsen, P.9
Fey, S.10
Marko-Varga, G.11
-
18
-
-
8344284323
-
A common open representation of mass spectrometry data and its application to proteomics research
-
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW: A common open representation of mass spectrometry data and its application to proteomics research. Nat Biotechnol 2004, 22:1459-1466.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1459-1466
-
-
Pedrioli, P.G.1
Eng, J.K.2
Hubley, R.3
Vogelzang, M.4
Deutsch, E.W.5
Raught, B.6
Pratt, B.7
Nilsson, E.8
Angeletti, R.H.9
Apweiler, R.10
Cheung, K.11
Costello, C.E.12
Hermjakob, H.13
Huang, S.14
Julian, R.K.15
Kapp, E.16
McComb, M.E.17
Oliver, S.G.18
Omenn, G.19
Paton, N.W.20
more..
-
19
-
-
0344737959
-
Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry
-
Li XJ, Zhang H, Ranish JA, Aebersold R: Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry. Anal Chem 2003, 75:6648-57.
-
(2003)
Anal Chem
, vol.75
, pp. 6648-6657
-
-
Li, X.J.1
Zhang, H.2
Ranish, J.A.3
Aebersold, R.4
-
20
-
-
0034789979
-
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
-
Han DK, Eng J, Zhou H, Aebersold R: Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat Biotechnol 2001, 19:946-51.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 946-951
-
-
Han, D.K.1
Eng, J.2
Zhou, H.3
Aebersold, R.4
-
21
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT: Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999, 292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
23
-
-
0033044637
-
Machine learning approaches for the prediction of signal peptides other protein sorting signals
-
Nielsen H, Brunak S, von Heijne G: Machine learning approaches for the prediction of signal peptides and other protein sorting signals. Protein Eng 1999, 12:3-9.
-
(1999)
Protein Eng
, vol.12
, pp. 3-9
-
-
Nielsen, H.1
Brunak, S.2
von Heijne, G.3
-
24
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25:25-9.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
26
-
-
0037396730
-
The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT TrEMBL InterPro
-
Camon E, Magrane M, Barrell D, Binns D, Fleischmann W, Kersey P, Mulder N, Oinn T, Maslen J, Cox A, Apweiler R: The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 2003, 13:662-72.
-
(2003)
Genome Res
, vol.13
, pp. 662-672
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Binns, D.4
Fleischmann, W.5
Kersey, P.6
Mulder, N.7
Oinn, T.8
Maslen, J.9
Cox, A.10
Apweiler, R.11
-
27
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-80.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
84874650557
-
-
MySQL
-
MySQL [http://www.msql.com]
-
-
-
|