DDBJ in the stream of various biological data

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Miyazaki, S ^a   Sugawara, H ^a   Ikeo, K ^a   Gojobori, T ^a   Tateno, Y ^a  

^a NATIONAL INSTITUTE OF GENETICS   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

ACCESS TO INFORMATION; ARTICLE; ASCIDIACEA; COMPUTER PROGRAM; DNA DATA BANK OF JAPAN; DNA SEQUENCE; GENE EXPRESSION; GENETIC DATABASE; HUMAN; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; NONHUMAN; ONLINE SYSTEM; PRIORITY JOURNAL; RICE; SEQUENCE HOMOLOGY;

ANIMALS; DATABASES, NUCLEIC ACID; HUMANS; INFORMATION STORAGE AND RETRIEVAL; INTERNET; JAPAN; SOFTWARE;

ASCIDIA; ASCIDIACEA;

EID: 0347756649     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (17)

1. Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
3. Zhang,J. and Madden,T.L. (1997) PowerBLAST: a new network BLAST application for interactive or automated sequence analysis and annotation. Genome Res., 7, 649-656.
4. Yamamoto,H., Tamura,T., Isono,K., Gojobori,T., Sugawara,H., Nishikawa,K., Saitou,N., Imanishi,T., Fukami-Kobayashi,K., Ikeo,K. et al. (1996) SAKURA: A new data submission system of DDBJ to meet users' needs in the age of mass production of DNA sequences. In Akutsu,T., Asai,K., Hagiya,M., Kuhara,S., Miyano,S. and Nakai,K. (eds), The Proceedings of the Seventh Workshop on Genome Informatics. Universal Academy Press, Tokyo, pp. 204-205.
5. Tateno,Y., Fukami-Kobayashi,K., Miyazaki,S., Sugawara,H. and Gojobori,T. (1998) DNA Data Bank of Japan at work on genome sequence data. Nucleic Acids Res., 26, 16-20.
6. Miyazaki,S., Sugawara,H., Gojobori,T. and Tateno,Y. (2003) DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Res., 31, 13-16.
7. Hattori,M., Fujiyama,A., Taylor,T.D., Watanabe,H., Yada,T., Park,H.-S., Toyoda,A., Ishii,K., Totoki,Y., Chol,D.-K. et al. (2000) The DNA sequence of human chromosome 21. Nature, 405, 311-319.
8. Dunham,I., Shimizu,N., Roe,B.A., Chissoe,S. Hunt,A.R., Collins,J.E., Bruskiewich,R., Beare,D.M., Clamp,M., Smink,L.J. et al. (1999) The DNA sequence of human chromosome 22. Nature, 402, 489-495.
9. Lander,E.S., Linton,L.M., Birren,B., Nusbaum,C., Zody,M.C., Baldwin,J., Devon,K., Dewar,K., Doyle,M., FitzHugh,W. et al. the International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
10. The MHC Sequencing Consortium (1999) Complete sequencing and gene map of a human major histocompatibility complex. Nature, 401, 921-923.
11. Satoh,N., Satou,Y., Davidson,B. and Levine,M. (2003) Ciona intestinalis: an emerging model for whole-genome analyses. Trends Genet., 19, 776-781.
12. Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T., Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y. et al. (2002) The genome sequence and structure of rice chromosome 1. Nature, 420, 312-316.
13. Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H. et al. Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN (2003) Collection, mapping and annotation of over 28 000 cDNA clones from japonica rice. Science, 301, 376-379.
14. Sugawara,H. and Miyazaki,S. (2003) Biological SOAP servers and web services provided by the public sequence data bank. Nucleic Acids Res., 31, 3836-3839.
15. Lipman,D.J. and Pearson,W.R. (1985) Rapid and sensitive protein similarity searches. Science, 227, 1435-1441.
16. Editorial (2002) Microarray standards at last. Nature, 419, 323.
17. Ikeo,K., Ishi-i,J., Tamura,T., Gojobori,T. and Tateno,Y. (2004) CIBEX: Center for Information Biology Gene Expression Database. Biologies, in press.