The Fanconi anemia gene network is conserved from zebrafish to human

Gene

Volumn 371, Issue 2, 2006, Pages 211-223

  Titus, Tom A ^a   Selvig, Daniel R ^a   Qin, Baifang ^b   Wilson, Catherine ^a   Starks, Amber M ^a   Roe, Bruce A ^b   Postlethwait, John H ^a  

^a UNIVERSITY OF OREGON   (United States)

^b UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

Ciona; Complex trait; Conserved synteny; Danio rerio; DNA repair; Genome integrity; Hydrophobicity; Tetraodo

Indexed keywords

COMPLEMENTARY DNA;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; COMPARATIVE STUDY; DATA BASE; EVOLUTION; EXON; FANCONI ANEMIA; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC CONSERVATION; GENETIC ORGANIZATION; GENOMICS; HUMAN; HYDROPHOBICITY; INTRON; METHODOLOGY; MOLECULAR CLONING; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL; PROTEIN STRUCTURE; PUFFER FISH; SYNTENY; VERTEBRATE; ZEBRA FISH;

AMINO ACID SEQUENCE; ANIMALS; CHROMOSOMES, ARTIFICIAL, BACTERIAL; FANCONI ANEMIA; FANCONI ANEMIA COMPLEMENTATION GROUP D2 PROTEIN; HUMANS; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; ZEBRAFISH;

CIONA; DANIO RERIO; TETRAODON NIGROVIRIDIS; TETRAODONTIDAE; VERTEBRATA;

EID: 33645787286     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.11.038     Document Type: Article

References (51)

1. Amores A., et al. Zebrafish hox clusters and vertebrate genome evolution. Science 282 (1998) 1711-1714
2. Bagby Jr. G.C. Genetic basis of Fanconi anemia. Curr. Opin. Hematol. 10 (2003) 68-76
3. Blom E., van de Vrugt H.J., de Vries Y., de Winter J.P., Arwert F., and Joenje H. Multiple TPR motifs characterize the Fanconi anemia FANCG protein. DNA Repair (Amst) 3 (2004) 77-84
4. D'Andrea A. Fanconi anemia. Curr. Biol. 13 (2003) R546
5. D'Andrea A.D. The Fanconi road to cancer. Genes Dev. 17 (2003) 1933-1936
6. de Winter J.P., et al. The Fanconi anaemia group G gene FANCG is identical with XRCC9. Nat. Genet. 20 (1998) 281-283
7. de Winter J.P., et al. Isolation of a cDNA representing the Fanconi anemia complementation group E gene. Am. J. Hum. Genet. 67 (2000) 1306-1308
8. de Winter J.P., et al. The Fanconi anaemia gene FANCF encodes a novel protein with homology to ROM. Nat. Genet. 24 (2000) 15-16
9. Deutsch M., and Long M. Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res. 27 (1999) 3219-3228
10. Ewing B., and Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
11. Ewing B., Hillier L., Wendl M.C., and Green P. Base-calling of automated sequencer traces using phred: I. Accuracy assessment. Genome Res. 8 (1998) 175-185
12. Force A., Lynch M., Pickett F.B., Amores A., Yan Y.-L., and Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151 (1999) 1531-1545
13. Garcia-Higuera I., et al. Interaction of the Fanconi anemia proteins and BRCA1 in a common pathway. Mol. Cell 7 (2001) 249-262
14. Gibson R.A., et al. Genetic mapping of the FACC gene and linkage analysis in Fanconi anaemia families. J. Med. Genet. 31 (1994) 868-871
15. Grunwald D.J., and Eisen J.S. Headwaters of the zebrafish-emergence of a new model vertebrate. Nat. Rev., Genet. 3 (2002) 717-724
16. Hedges S.B. The origin and evolution of model organisms. Nat. Rev., Genet. 3 (2002) 838-849
17. Higgins D.G., and Sharp P.M. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73 (1988) 237-244
18. Hirsh A.E., and Fraser H.B. Protein dispensability and rate of evolution. Nature 411 (2001) 1046-1049
19. Howlett N.G., et al. Biallelic inactivation of BRCA2 in Fanconi anemia. Science 297 (2002) 606-609
20. Hukriede N.A., et al. Radiation hybrid mapping of the zebrafish genome. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 9745-9750
21. Ianzano L., et al. The genomic organization of the Fanconi anemia group A (FAA) gene. Genomics 41 (1997) 309-314
22. Kruyt F.A., Abou-Zahr F., Mok H., and Youssoufian H. Resistance to mitomycin C requires direct interaction between the Fanconi anemia proteins FANCA and FANCG in the nucleus through an arginine-rich domain. J. Biol. Chem. 274 (1999) 34212-34218
23. Kupfer G.M., Naf D., Suliman A., Pulsipher M., and D'Andrea A.D. The Fanconi anaemia proteins, FAA and FAC, interact to form a nuclear complex. Nat. Genet. 17 (1997) 487-490
24. Kupfer G., et al. A patient-derived mutant form of the Fanconi anemia protein, FANCA, is defective in nuclear accumulation. Exp. Hematol. 27 (1999) 587-593
25. Kyte J., and Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157 (1982) 105-132
26. Leveille F., et al. The Fanconi anemia gene product FANCF is a flexible adaptor protein. J. Biol. Chem. 279 (2004) 39421-39430
27. Levitus M., et al. Heterogeneity in Fanconi anemia: evidence for 2 new genetic subtypes. Blood 103 (2004) 2498-2503
28. Liu T.X., et al. Knockdown of zebrafish Fancd2 causes developmental abnormalities via p53-dependent apoptosis. Dev. Cell 5 (2003) 903-914
29. Lo Ten Foe J.R., et al. Expression cloning of a cDNA for the major Fanconi anaemia gene, FAA. Nat. Genet. 14 (1996) 320-323
30. Meetei A.R., et al. A novel ubiquitin ligase is deficient in Fanconi anemia. Nat. Genet. 35 (2003) 165-170
31. Meetei A.R., et al. X-linked inheritance of Fanconi anemia complementation group B. Nat. Genet. 36 (2004) 1219-1224
32. Meetei A.R., Yan Z., and Wang W. FANCL replaces BRCA1 as the likely ubiquitin ligase responsible for FANCD2 monoubiquitination. Cell Cycle 3 (2004) 179-181
33. Meyer A., and Schartl M. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr. Opin. Cell Biol. 11 (1999) 699-704
34. Montes de Oca R., et al. Regulated interaction of the Fanconi anemia protein, FANCD2, with chromatin. Blood 105 (2005) 1003-1009
35. Morizot D.C., McEntire B.B., Della Coletta L., Kazianis S., Schartl M., and Nairn R.S. Mapping of tyrosine kinase gene family members in a Xiphophorus melanoma model. Mol. Carcinog. 22 (1998) 150-157
36. Naruse K., Tanaka M., Mita K., Shima A., Postlethwait J., and Mitani H. A Medaka Gene Map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res. 14 (2004) 820-828
37. Oates A.C., et al. Gene duplication of zebrafish JAK2 homologs is accompanied by divergent embryonic expression patterns; only jak2a is expressed during erythropoiesis. Dev. Dyn. 215 (1999) 352-370
38. Pang Q., et al. The Fanconi anemia complementation group C gene product: structural evidence of multifunctionality. Blood 98 (2001) 1392-1401
39. Postlethwait J.H., et al. Vertebrate genome evolution and the zebrafish gene map. Nat. Genet. 18 (1998) 345-349
40. Postlethwait J.H., et al. Zebrafish comparative genomics and the origins of vertebrate chromosomes. Genome Res. 10 (2000) 1890-1902
41. Richardson C. RAD51, genomic stability, and tumorigenesis. Cancer Lett. 218 (2005) 127-139
42. Saadatzadeh M.R., Bijangi-Vishehsaraei K., Hong P., Bergmann H., and Haneline L.S. Oxidant hypersensitivity of Fanconi anemia type C-deficient cells is dependent on a redox-regulated apoptotic pathway. J. Biol. Chem. 279 (2004) 16805-16812
43. Scata K.A., and El-Deiry W.S. Zebrafish: swimming towards a role for Fanconi genes in DNA repair. Cancer Biol. 3 (2004)
44. Siddique M.A., Nakanishi K., Taniguchi T., Grompe M., and D'Andrea A.D. Function of the Fanconi anemia pathway in Fanconi anemia complementation group F and D1 cells. Exp. Hematol. 29 (2001) 1448-1455
45. Taniguchi T., Garcia-Higuera I., Andreassen P.R., Gregory R.C., Grompe M., and D'Andrea A.D. S-phase-specific interaction of the Fanconi anemia protein, FANCD2, with BRCA1 and RAD51. Blood 100 (2002) 2414-2420
46. Taylor J., Braasch I., Frickey T., Meyer A., and Van De Peer Y. Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res. 13 (2003) 382-390
47. Timmers C., et al. Positional cloning of a novel Fanconi anemia gene, FANCD2. Mol. Cell. 7 (2001) 241-248
48. Traver D.E.A. Transplantation and in vivo imaging of multilineage engraftment in zebrafish bloodless mutants. Nat. Immunol. 4 (2003) 1238-1246
49. Venkitaraman A.R. Tracing the network connecting BRCA and Fanconi anaemia proteins. Nat. Rev., Cancer 4 (2004) 266-276
50. Wittbrodt J., Meyer A., and Schartl M. More genes in fish?. BioEssays 20 (1998) 511-515
51. Woods I.G., et al. A comparative map of the zebrafish genome. Genome Res. 10 (2000) 1903-1914