메뉴 건너뛰기




Volumn 12, Issue 6, 2006, Pages 1721-1727

Reproducibility of gene expression signature-based predictions in replicate experiments

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOPHOSPHAMIDE; DOXORUBICIN; FLUOROURACIL; PACLITAXEL;

EID: 33645696093     PISSN: 10780432     EISSN: None     Source Type: Journal    
DOI: 10.1158/1078-0432.CCR-05-1539     Document Type: Article
Times cited : (30)

References (24)
  • 1
    • 0036534202 scopus 로고    scopus 로고
    • DNA microarrays in clinical oncology
    • Ramaswamy S, Golub TR. DNA microarrays in clinical oncology. J Clin Oncol 2002;20:1932-41.
    • (2002) J Clin Oncol , vol.20 , pp. 1932-1941
    • Ramaswamy, S.1    Golub, T.R.2
  • 2
    • 0034680102 scopus 로고    scopus 로고
    • Molecular portraits of human breast tumours
    • Perou CM, Sorlie T, Eisen MB, et al. Molecular portraits of human breast tumours. Nature 2000;406:747-52.
    • (2000) Nature , vol.406 , pp. 747-752
    • Perou, C.M.1    Sorlie, T.2    Eisen, M.B.3
  • 3
    • 23844549918 scopus 로고    scopus 로고
    • Different molecular subtypes of breast cancer respond differently to preoperative chemotherapy
    • Rouzier R, Perou CM, Symmans WF, et al. Different molecular subtypes of breast cancer respond differently to preoperative chemotherapy. Clin Cancer Res 2005;11:5678-85.
    • (2005) Clin Cancer Res , vol.11 , pp. 5678-5685
    • Rouzier, R.1    Perou, C.M.2    Symmans, W.F.3
  • 4
    • 0037137519 scopus 로고    scopus 로고
    • A gene-expression signature as a predictor of survival in breast cancer
    • van de Vijver MJ, He YD, van't Veer LJ, et al. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 2002;347:1999-2009.
    • (2002) N Engl J Med , vol.347 , pp. 1999-2009
    • Van De Vijver, M.J.1    He, Y.D.2    Van't Veer, L.J.3
  • 5
    • 2942729848 scopus 로고    scopus 로고
    • Gene expression profiles predict complete pathologic response to neoadjuvant paclitaxel/FAC chemotherapy in breast cancer
    • Ayers M, Symmans WF, Stec J, et al. Gene expression profiles predict complete pathologic response to neoadjuvant paclitaxel/FAC chemotherapy in breast cancer. J Clin Oncol 2004;22:2284-93.
    • (2004) J Clin Oncol , vol.22 , pp. 2284-2293
    • Ayers, M.1    Symmans, W.F.2    Stec, J.3
  • 6
    • 0042125511 scopus 로고    scopus 로고
    • Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer
    • Chang JC, Wooten EC, Tsimelzon A, et al. Gene expression profiling for the prediction of therapeutic response to docetaxel in patients with breast cancer. Lancet 2003;362:362-9.
    • (2003) Lancet , vol.362 , pp. 362-369
    • Chang, J.C.1    Wooten, E.C.2    Tsimelzon, A.3
  • 7
    • 0037672713 scopus 로고    scopus 로고
    • Total RNA yield and microarray gene expression profiles from fine needle aspiration and core needle biopsy samples of breast cancer
    • Symmans WF, Ayers M, Clark EA, et al. Total RNA yield and microarray gene expression profiles from fine needle aspiration and core needle biopsy samples of breast cancer. Cancer 2003;97:2960-71.
    • (2003) Cancer , vol.97 , pp. 2960-2971
    • Symmans, W.F.1    Ayers, M.2    Clark, E.A.3
  • 8
    • 23844519571 scopus 로고    scopus 로고
    • Comparison of the predictive accuracy of DNA array based multigene classifiers across cDNA arrays and Affymetrix GeneChips
    • Stec J, Wang J, Coombes K, et al. Comparison of the predictive accuracy of DNA array based multigene classifiers across cDNA arrays and Affymetrix GeneChips. J Mol Diagn 2005;7:357-67.
    • (2005) J Mol Diagn , vol.7 , pp. 357-367
    • Stec, J.1    Wang, J.2    Coombes, K.3
  • 10
    • 18244384210 scopus 로고    scopus 로고
    • Multiple-laboratory comparison of microarray platforms
    • Irizarry RA, Warren D, Spencer F, et al. Multiple-laboratory comparison of microarray platforms. Nature Methods 2005;2:345-50.
    • (2005) Nature Methods , vol.2 , pp. 345-350
    • Irizarry, R.A.1    Warren, D.2    Spencer, F.3
  • 11
    • 20444369726 scopus 로고    scopus 로고
    • Development of Pharmacogenomic markers to select preoperative chemotherapy for breast cancer
    • Pusztai L, Symmans WF, Hortobagyi GN. Development of Pharmacogenomic markers to select preoperative chemotherapy for breast cancer. Breast Cancer 2005;12:73-85.
    • (2005) Breast Cancer , vol.12 , pp. 73-85
    • Pusztai, L.1    Symmans, W.F.2    Hortobagyi, G.N.3
  • 12
    • 33645690182 scopus 로고    scopus 로고
    • Detecting and correcting misalignment in Affymetrix data
    • The University of Texas M.D. Anderson Cancer Center
    • Baggerly KA. Detecting and correcting misalignment in Affymetrix data. 2002. The University of Texas M.D. Anderson Cancer Center, Department of BiostatisticsTechnical Report UTMDABTR-005-03. Available from: http://www.mdanderson.org/pdf/biostats_utmdabtr00503.pdf.
    • (2002) Department of BiostatisticsTechnical Report UTMDABTR-005-03
    • Baggerly, K.A.1
  • 13
    • 17744413236 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • research0032.1-0032.11
    • Li C, Wong WH. Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol 2001;2:research0032.1-0032.11.
    • (2001) Genome Biol , vol.2
    • Li, C.1    Wong, W.H.2
  • 14
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • Lin L. A concordance correlation coefficient to evaluate reproducibility. Biometrics 1989;45:255-68.
    • (1989) Biometrics , vol.45 , pp. 255-268
    • Lin, L.1
  • 16
    • 10944260135 scopus 로고    scopus 로고
    • Clinical trial designs for microarray predictive marker discovery and assessment
    • Pusztai L, Hess KR. Clinical trial designs for microarray predictive marker discovery and assessment. Ann Oncol 2004;15:1731-7.
    • (2004) Ann Oncol , vol.15 , pp. 1731-1737
    • Pusztai, L.1    Hess, K.R.2
  • 17
    • 0038237368 scopus 로고    scopus 로고
    • Estimating dataset size requirements for classifying DNA microarray data
    • Mukherjee S, Tamayo P, Rogers S, et al. Estimating dataset size requirements for classifying DNA microarray data. J Comput Biol 2003;10:119-42.
    • (2003) J Comput Biol , vol.10 , pp. 119-142
    • Mukherjee, S.1    Tamayo, P.2    Rogers, S.3
  • 18
    • 33645664040 scopus 로고    scopus 로고
    • Affymetrix gene chip profile predicts pathologic complete response to preoperative paclitaxel/FAC chemotherapy in breast cancer
    • Pusztai L, Hess KR, Gold DL, et al. Affymetrix gene chip profile predicts pathologic complete response to preoperative paclitaxel/FAC chemotherapy in breast cancer [abstract #306]. Breast Cancer Res Treat 2005;94:332.
    • (2005) Breast Cancer Res Treat , vol.94 , pp. 332
    • Pusztai, L.1    Hess, K.R.2    Gold, D.L.3
  • 20
    • 18244389201 scopus 로고    scopus 로고
    • Members of the Toxicogenomics Research Consortium: Standardizing global gene expression analysis between laboratories and across platforms
    • Weis GK. Members of the Toxicogenomics Research Consortium: standardizing global gene expression analysis between laboratories and across platforms. Nature Methods 2005;5:351-6.
    • (2005) Nature Methods , vol.5 , pp. 351-356
    • Weis, G.K.1
  • 21
    • 0037024478 scopus 로고    scopus 로고
    • Concordance between local and central laboratory HER2 testing in the breast intergroup trial N9831
    • Roche PC, Suman VJ, Jenkins RB, et al. Concordance between local and central laboratory HER2 testing in the breast intergroup trial N9831. J Natl Cancer Inst 2002;94:855-7.
    • (2002) J Natl Cancer Inst , vol.94 , pp. 855-857
    • Roche, P.C.1    Suman, V.J.2    Jenkins, R.B.3
  • 22
    • 26444478225 scopus 로고    scopus 로고
    • HER2 testing by local central and reference laboratories in the NCCTG N9831 intergroup adjuvant trial
    • abstract 567
    • Perez EA, Suman VJ, Davidson NE, et al. HER2 testing by local central and reference laboratories in the NCCTG N9831 intergroup adjuvant trial. Proc Am Soc Clin Oncol 2004:18 [abstract 567].
    • (2004) Proc Am Soc Clin Oncol , vol.18
    • Perez, E.A.1    Suman, V.J.2    Davidson, N.E.3
  • 23
    • 0033959550 scopus 로고    scopus 로고
    • Reliability of immunohistochemical demonstration of oestrogen receptors in routine practice: Interlaboratory variance in the sensitivity of detection and evaluation of scoring systems
    • Rhodes A, Rhodes A, Jasani B, Barnes DM, Bobrow LG, Miller KD. Reliability of immunohistochemical demonstration of oestrogen receptors in routine practice: interlaboratory variance in the sensitivity of detection and evaluation of scoring systems. J Clin Pathol 2000;53:125-30.
    • (2000) J Clin Pathol , vol.53 , pp. 125-130
    • Rhodes, A.1    Rhodes, A.2    Jasani, B.3    Barnes, D.M.4    Bobrow, L.G.5    Miller, K.D.6
  • 24
    • 2942578063 scopus 로고    scopus 로고
    • A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen
    • Ma XJ, Wang Z, Ryan PD, et al. A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell 2004;5:607-16.
    • (2004) Cancer Cell , vol.5 , pp. 607-616
    • Ma, X.J.1    Wang, Z.2    Ryan, P.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.