-
1
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
Uversky, V. N. (2002) Natively unfolded proteins: A point where biology waits for physics, Protein Sci. 11, 739-756.
-
(2002)
Protein Sci.
, vol.11
, pp. 739-756
-
-
Uversky, V.N.1
-
2
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson, H. J., and Wright, P. E. (2005) Intrinsically unstructured proteins and their functions, Nat. Rev. Mol. Cell. Biol. 6, 197-208.
-
(2005)
Nat. Rev. Mol. Cell. Biol.
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
3
-
-
13844255387
-
Natively unfolded proteins
-
Fink, A. L. (2005) Natively unfolded proteins, Curr. Opin. Struct. Biol. 15, 35-41.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 35-41
-
-
Fink, A.L.1
-
4
-
-
0034581536
-
Quantitative dissection of transcriptional control system: N-Dependent antitermination complex of phage λ as regulatory paradigm
-
van Gilst, M. R., and von Hippel, P. H. (2000) Quantitative dissection of transcriptional control system: N-Dependent antitermination complex of phage λ as regulatory paradigm, Methods Enzymol. 323, 1-31.
-
(2000)
Methods Enzymol.
, vol.323
, pp. 1-31
-
-
Van Gilst, M.R.1
Von Hippel, P.H.2
-
5
-
-
0031614914
-
Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage λ N protein
-
Mogridge, J., Legault, P., Li, J., van Oene, M. D., Kay, L. E., and Greenblatt, J. (1998) Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage λ N protein, Mol. Cell 1, 265-275.
-
(1998)
Mol. Cell
, vol.1
, pp. 265-275
-
-
Mogridge, J.1
Legault, P.2
Li, J.3
Van Oene, M.D.4
Kay, L.E.5
Greenblatt, J.6
-
6
-
-
0035943613
-
The structure of the coliphage HK022 Nun protein-λ-phage boxB RNA complex. Implications for the mechanism of transcription termination
-
Faber, C., Scharpf, M., Becker, T., Sticht, H., and Rosch, P. (2001) The structure of the coliphage HK022 Nun protein-λ-phage boxB RNA complex. Implications for the mechanism of transcription termination, J. Biol. Chem. 276, 32064-32070.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 32064-32070
-
-
Faber, C.1
Scharpf, M.2
Becker, T.3
Sticht, H.4
Rosch, P.5
-
7
-
-
0028306105
-
Structure of the equine infectious anemia virus Tat protein
-
Willbold, D., Rosin-Arbesfeld, R., Sticht, H., Frank, R., and Rosch, P. (1994) Structure of the equine infectious anemia virus Tat protein, Science 264, 1584-1587.
-
(1994)
Science
, vol.264
, pp. 1584-1587
-
-
Willbold, D.1
Rosin-Arbesfeld, R.2
Sticht, H.3
Frank, R.4
Rosch, P.5
-
8
-
-
0028902911
-
Structural studies of HIV-1 Tat protein
-
Bayer, P., Kraft, M., Ejchart, A., Westendorp, M., Frank, R., and Rosch, P. (1995) Structural studies of HIV-1 Tat protein, J. Mol. Biol. 247, 529-535.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 529-535
-
-
Bayer, P.1
Kraft, M.2
Ejchart, A.3
Westendorp, M.4
Frank, R.5
Rosch, P.6
-
9
-
-
0348087031
-
HIV Tat, its targets and the control of viral gene expression
-
Brigati, C., Giacca, M., Noonan, D. M., and Albini, A. (2003) HIV Tat, its targets and the control of viral gene expression, FEMS Microbiol. Lett. 220, 57-65.
-
(2003)
FEMS Microbiol. Lett.
, vol.220
, pp. 57-65
-
-
Brigati, C.1
Giacca, M.2
Noonan, D.M.3
Albini, A.4
-
10
-
-
0023988798
-
NusA protein is necessary and sufficient in vitro for phage λ N gene product to suppress a rho-independent terminator placed downstream of nutL
-
Whalen, W., Ghosh, B., and Das, A. (1988) NusA protein is necessary and sufficient in vitro for phage λ N gene product to suppress a rho-independent terminator placed downstream of nutL, Proc. Natl. Acad. Sci. U.S.A. 85, 2494-2498.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 2494-2498
-
-
Whalen, W.1
Ghosh, B.2
Das, A.3
-
11
-
-
0025601783
-
Action of an RNA site at a distance: Role of the nut genetic signal in transcription antitermination by phage-λ N gene product
-
Whalen, W. A., and Das, A. (1990) Action of an RNA site at a distance: Role of the nut genetic signal in transcription antitermination by phage-λ N gene product, New Biol. 2, 975-991.
-
(1990)
New Biol.
, vol.2
, pp. 975-991
-
-
Whalen, W.A.1
Das, A.2
-
12
-
-
0026703203
-
Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage λ
-
Mason, S. W., Li, J., and Greenblatt, J. (1992) Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage λ, J. Biol. Chem. 267, 19418-19426.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 19418-19426
-
-
Mason, S.W.1
Li, J.2
Greenblatt, J.3
-
13
-
-
0028064962
-
Control of transcription processivity in phage λ: Nus factors strengthen the termination-resistant state of RNA polymerase induced by N antiterminator
-
DeVito, J., and Das, A. (1994) Control of transcription processivity in phage λ: Nus factors strengthen the termination-resistant state of RNA polymerase induced by N antiterminator, Proc. Natl. Acad. Sci. U.S.A. 91, 8660-8664.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 8660-8664
-
-
DeVito, J.1
Das, A.2
-
14
-
-
0025666852
-
Transcription-dependent competition for a host factor: The function and optimal sequence of the phage λ boxA transcription antitermination signal
-
Friedman, D. I., Olson, E. R., Johnson, L. L., Alessi, D., and Craven, M. G. (1990) Transcription-dependent competition for a host factor: The function and optimal sequence of the phage λ boxA transcription antitermination signal, Genes Dev. 4, 2210-2222.
-
(1990)
Genes Dev.
, vol.4
, pp. 2210-2222
-
-
Friedman, D.I.1
Olson, E.R.2
Johnson, L.L.3
Alessi, D.4
Craven, M.G.5
-
15
-
-
0027296170
-
Transcriptional antitermination
-
Greenblatt, J., Nodwell, J. R., and Mason, S. W. (1993) Transcriptional antitermination, Nature 364, 401-406.
-
(1993)
Nature
, vol.364
, pp. 401-406
-
-
Greenblatt, J.1
Nodwell, J.R.2
Mason, S.W.3
-
16
-
-
0028880310
-
A protein-RNA interaction network facilitates the template-independent cooperative assembly on RNA polymerase of a stable antitermination complex containing the λ N protein
-
Mogridge, J., Mah, T. F., and Greenblatt, J. (1995) A protein-RNA interaction network facilitates the template-independent cooperative assembly on RNA polymerase of a stable antitermination complex containing the λ N protein, Genes Dev. 9, 2831-2845.
-
(1995)
Genes Dev.
, vol.9
, pp. 2831-2845
-
-
Mogridge, J.1
Mah, T.F.2
Greenblatt, J.3
-
17
-
-
0021709321
-
Interactions of bacteriophage and host macromolecules in the growth of bacteriophage λ
-
Friedman, D. I., Olson, E. R., Georgopoulos, C., Tilly, K., Herskowitz, I., and Banuett, F. (1984) Interactions of bacteriophage and host macromolecules in the growth of bacteriophage λ, Microbiol. Rev. 48, 299-325.
-
(1984)
Microbiol. Rev.
, vol.48
, pp. 299-325
-
-
Friedman, D.I.1
Olson, E.R.2
Georgopoulos, C.3
Tilly, K.4
Herskowitz, I.5
Banuett, F.6
-
18
-
-
0032459209
-
Structure and mechanism in transcriptional antitermination by the bacteriophage λ N protein
-
Greenblatt, J., Mah, T. F., Legault, P., Mogridge, J., Li J., and Kay, L. E. (1998). Structure and mechanism in transcriptional antitermination by the bacteriophage λ N protein, Cold Spring Harbor Symp. Quant. Biol. 63, 327-336.
-
(1998)
Cold Spring Harbor Symp. Quant. Biol.
, vol.63
, pp. 327-336
-
-
Greenblatt, J.1
Mah, T.F.2
Legault, P.3
Mogridge, J.4
Li, J.5
Kay, L.E.6
-
19
-
-
0029048796
-
Structural variety of arginine-rich RNA-binding peptides
-
Tan, R., and Frankel, A. D. (1995) Structural variety of arginine-rich RNA-binding peptides, Proc. Natl. Acad. Sci. U.S.A. 92, 5282-5286.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 5282-5286
-
-
Tan, R.1
Frankel, A.D.2
-
20
-
-
0031024660
-
Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE)
-
Cilley, C. D., and Williamson, J. R. (1997) Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE), RNA 3, 57-67.
-
(1997)
RNA
, vol.3
, pp. 57-67
-
-
Cilley, C.D.1
Williamson, J.R.2
-
21
-
-
0030710554
-
Assembly of the N-dependent antitermination complex of phage λ: NusA and RNA bind independently to different unfolded domains of the N protein
-
van Gilst, M. R., and von Hippel, P. H. (1997) Assembly of the N-dependent antitermination complex of phage λ: NusA and RNA bind independently to different unfolded domains of the N protein, J. Mol. Biol. 274, 160-173.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 160-173
-
-
Van Gilst, M.R.1
Von Hippel, P.H.2
-
22
-
-
0032540286
-
NMR structure of the bacteriophage λ N peptide/boxB RNA complex: Recognition of a GNRA fold by an arginine-rich motif
-
Legault, P., Li, J., Mogridge, J., Kay, L. E., and Greenblatt, J. (1998) NMR structure of the bacteriophage λ N peptide/boxB RNA complex: Recognition of a GNRA fold by an arginine-rich motif, Cell 93, 289-299.
-
(1998)
Cell
, vol.93
, pp. 289-299
-
-
Legault, P.1
Li, J.2
Mogridge, J.3
Kay, L.E.4
Greenblatt, J.5
-
23
-
-
0000641399
-
Antitermination in bacteriophage λ. The structure of the N36 peptide-boxB RNA complex
-
Scharpf, M., Sticht, H., Schweimer, K., Boehm, M., Hoffmann, S., and Rosch, P. (2000) Antitermination in bacteriophage λ. The structure of the N36 peptide-boxB RNA complex, Eur. J. Biochem. 267, 2397-2408.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 2397-2408
-
-
Scharpf, M.1
Sticht, H.2
Schweimer, K.3
Boehm, M.4
Hoffmann, S.5
Rosch, P.6
-
24
-
-
0141730393
-
Context and conformation dictate function of a transcription antitermination switch
-
Xia, T., Frankel, A., Takahashi, T. T., Ren, J., and Roberts, R. W. (2003) Context and conformation dictate function of a transcription antitermination switch, Nat. Struct. Biol. 10, 812-819.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 812-819
-
-
Xia, T.1
Frankel, A.2
Takahashi, T.T.3
Ren, J.4
Roberts, R.W.5
-
25
-
-
0032747748
-
Functional importance of regions in Escherichia coli elongation factor NusA that interact with RNA polymerase, the bacteriophage λ N protein and RNA
-
Mah, T. F., Li, J., Davidson, A. R., and Greenblatt, J. (1999) Functional importance of regions in Escherichia coli elongation factor NusA that interact with RNA polymerase, the bacteriophage λ N protein and RNA, Mol. Microbiol. 34, 523-537.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 523-537
-
-
Mah, T.F.1
Li, J.2
Davidson, A.R.3
Greenblatt, J.4
-
26
-
-
23644454655
-
The E. coli NusA carboxy-terminal domains are structurally similar and show specific RNAP- and λ N interaction
-
Eisenmann, A., Schwarz, S., Prasch, S., Schweimer, K., and Rosch, P. (2005) The E. coli NusA carboxy-terminal domains are structurally similar and show specific RNAP- and λ N interaction, Protein Sci. 14, 2018-2029.
-
(2005)
Protein Sci.
, vol.14
, pp. 2018-2029
-
-
Eisenmann, A.1
Schwarz, S.2
Prasch, S.3
Schweimer, K.4
Rosch, P.5
-
27
-
-
4644245147
-
Structural basis for the interaction of Escherichia coli NusA with protein N of phage λ
-
Bonin, I., Muhlberger, R., Bourenkov, G. P., Huber, R., Bacher, A., Richter, G., and Wahl, M. C. (2004) Structural basis for the interaction of Escherichia coli NusA with protein N of phage λ, Proc. Natl. Acad. Sci. U.S.A. 101, 13762-13767.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 13762-13767
-
-
Bonin, I.1
Muhlberger, R.2
Bourenkov, G.P.3
Huber, R.4
Bacher, A.5
Richter, G.6
Wahl, M.C.7
-
28
-
-
13344260000
-
Interaction between the phage HK022 Nun protein and the nut RNA of phage λ
-
Chattopadhyay, S., Hung, S. C., Stuart, A. C., Palmer, A. G., III, Garcia-Mena, J., Das, A., and Gottesman, M. E. (1995) Interaction between the phage HK022 Nun protein and the nut RNA of phage λ, Proc. Natl. Acad. Sci. U.S.A. 92, 12131-12135.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 12131-12135
-
-
Chattopadhyay, S.1
Hung, S.C.2
Stuart, A.C.3
Palmer III, A.G.4
Garcia-Mena, J.5
Das, A.6
Gottesman, M.E.7
-
29
-
-
0026095918
-
Assembly of transcription elongation complexes containing the N protein of phage λ and the Escherichia coli elongation factors NusA, NusB, NusG, and S10
-
Mason, S. W., and Greenblatt, J. (1991). Assembly of transcription elongation complexes containing the N protein of phage λ and the Escherichia coli elongation factors NusA, NusB, NusG, and S10, Genes Dev. 5, 1504-1512.
-
(1991)
Genes Dev.
, vol.5
, pp. 1504-1512
-
-
Mason, S.W.1
Greenblatt, J.2
-
30
-
-
0023651362
-
An antitermination protein engages the elongating transcription apparatus at a promoter-proximal recognition site
-
Barik, S., Ghosh, B., Whalen, W., Lazinski, D., and Das, A. (1987) An antitermination protein engages the elongating transcription apparatus at a promoter-proximal recognition site, Cell 50, 885-899.
-
(1987)
Cell
, vol.50
, pp. 885-899
-
-
Barik, S.1
Ghosh, B.2
Whalen, W.3
Lazinski, D.4
Das, A.5
-
32
-
-
0034992645
-
A method for efficient isotopic labeling of recombinant proteins
-
Marley, J., Lu, M., and Bracken, C. (2001) A method for efficient isotopic labeling of recombinant proteins, J. Biomol. NMR 20, 71-75.
-
(2001)
J. Biomol. NMR
, vol.20
, pp. 71-75
-
-
Marley, J.1
Lu, M.2
Bracken, C.3
-
33
-
-
12044252858
-
Methodological advances in protein NMR
-
Bax, A., and Grzesiek, S. (1993) Methodological advances in protein NMR, Acc. Chem. Res. 26, 131-138.
-
(1993)
Acc. Chem. Res.
, vol.26
, pp. 131-138
-
-
Bax, A.1
Grzesiek, S.2
-
34
-
-
0028389502
-
A general enhancement scheme in heteronuclear multidimensional NMR employing pulsed field gradients
-
Schleucher, J., Schwendinger, M., Sattler, M., Schmidt, P., Schedletzky, O., Glaser, S. J., Sorensen, O. W., and Griesinger, C. (1994) A general enhancement scheme in heteronuclear multidimensional NMR employing pulsed field gradients, J. Biomol. NMR 4, 301-306.
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 301-306
-
-
Schleucher, J.1
Schwendinger, M.2
Sattler, M.3
Schmidt, P.4
Schedletzky, O.5
Glaser, S.J.6
Sorensen, O.W.7
Griesinger, C.8
-
35
-
-
9844252882
-
NMR-based discovery of lead inhibitors that block DNA binding of the human papillomavirus E2 protein
-
Hajduk, P. J., Dinges, J., Miknis, G. F., Merlock, M., Middleton, T., Kempf, D. J., Egan, D. A., Walter, K. A., Robins, T. S., Shuker, S. B., Holzman, T. F., and Fesik, S. W. (1997) NMR-based discovery of lead inhibitors that block DNA binding of the human papillomavirus E2 protein, J. Med. Chem. 40, 3144-3150.
-
(1997)
J. Med. Chem.
, vol.40
, pp. 3144-3150
-
-
Hajduk, P.J.1
Dinges, J.2
Miknis, G.F.3
Merlock, M.4
Middleton, T.5
Kempf, D.J.6
Egan, D.A.7
Walter, K.A.8
Robins, T.S.9
Shuker, S.B.10
Holzman, T.F.11
Fesik, S.W.12
-
36
-
-
0028673594
-
Chemical shifts as a tool for structure determination
-
Wishart, D. S., and Sykes, B. D. (1994) Chemical shifts as a tool for structure determination, Methods Enzymol. 239, 363-392.
-
(1994)
Methods Enzymol.
, vol.239
, pp. 363-392
-
-
Wishart, D.S.1
Sykes, B.D.2
-
37
-
-
0032570318
-
The C-terminal half of the anti-σ factor FlgM contains a dynamic equilibrium solution structure favoring helical conformations
-
Daughdrill, G. W., Hanely, L. J., and Dahlquist, F. W. (1998) The C-terminal half of the anti-σ factor FlgM contains a dynamic equilibrium solution structure favoring helical conformations, Biochemistry 37, 1076-1082.
-
(1998)
Biochemistry
, vol.37
, pp. 1076-1082
-
-
Daughdrill, G.W.1
Hanely, L.J.2
Dahlquist, F.W.3
-
38
-
-
0021764802
-
Polypeptide secondary structure determination by nuclear magnetic resonance observation of short proton-proton distances
-
Wuthrich, K., Billeter, M., and Braun, W. (1984) Polypeptide secondary structure determination by nuclear magnetic resonance observation of short proton-proton distances, J. Mol. Biol. 180, 715-740.
-
(1984)
J. Mol. Biol.
, vol.180
, pp. 715-740
-
-
Wuthrich, K.1
Billeter, M.2
Braun, W.3
-
39
-
-
0023041807
-
Nuclear magnetic resonance identification of "half-turn" and 3(10)-helix secondary structure in rabbit liver metallothionein-2
-
Wagner, G., Neuhaus, D., Worgotter, E., Vasak, M., Kagi, J. H., and Wuthrich, K. (1986) Nuclear magnetic resonance identification of "half-turn" and 3(10)-helix secondary structure in rabbit liver metallothionein-2, J. Mol. Biol. 187, 131-135.
-
(1986)
J. Mol. Biol.
, vol.187
, pp. 131-135
-
-
Wagner, G.1
Neuhaus, D.2
Worgotter, E.3
Vasak, M.4
Kagi, J.H.5
Wuthrich, K.6
-
41
-
-
25444481051
-
Low energy CD of RNA hairpin unveils a loop conformation required for λN antitermination activity
-
Johnson, N. P., Baase, W. A., and von Hippel, P. H. (2005) Low energy CD of RNA hairpin unveils a loop conformation required for λN antitermination activity, J. Biol. Chem. 280, 32177-32183.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 32177-32183
-
-
Johnson, N.P.1
Baase, W.A.2
Von Hippel, P.H.3
-
42
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., and Wuthrich, K. (1996) MOLMOL: A program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-5, 29-32.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
|