Functional genomics of abiotic stress tolerance in cereals

Briefings in Functional Genomics and Proteomics

Volumn 4, Issue 4, 2006, Pages 343-354

  Langridge, Peter ^a   Paltridge, Nicholas ^a   Fincher, Geoff ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Abiotic stress; Cereals; Cold; Drought; Salinity

Indexed keywords

GENE PRODUCT; MINERAL; SODIUM CHLORIDE; WATER;

AGRICULTURAL PROCEDURES; BARLEY; CEREAL; CROP PRODUCTION; DROUGHT STRESS; FUNCTIONAL GENOMICS; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; GERMPLASM; LAND USE; LANDRACE; MINERAL DEFICIENCY; MOLECULAR MECHANICS; NONHUMAN; PLANT DEFENSE; PLANT DEVELOPMENT; PLANT GENETICS; PLANT GROWTH; PLANT METABOLISM; PLANT STRESS; PLANT YIELD; REVIEW; SALT TOLERANCE; SIGNAL TRANSDUCTION; SODIUM DEFICIENCY; TEMPERATURE; WATER AVAILABILITY; WATER QUALITY; WHEAT;

ADAPTATION, PHYSIOLOGICAL; CEREALS; GENE EXPRESSION REGULATION, PLANT; GENETIC VARIATION; GENOME, PLANT; GENOMICS; HORDEUM; SIGNAL TRANSDUCTION; SODIUM CHLORIDE; TEMPERATURE; TRANSCRIPTION, GENETIC; TRITICUM; VARIATION (GENETICS); WATER;

HORDEUM VULGARE SUBSP. VULGARE; TRITICUM AESTIVUM;

EID: 33645574800     PISSN: 14739550     EISSN: 14774062     Source Type: Journal    
DOI: 10.1093/bfgp/eli005     Document Type: Review

References (93)

1. Boyer JS. Plant productivity and environment. Science 1982; 218:443-8.
2. Niyogi KK. Photoprotection revisited: genetic and molecular approaches. Ann Rev Plant Physiol Plant Mol Biol 1999; 50:333-59.
3. Alscher RG, Donahue JL, Cramer CL. Reactive oxygen species and antioxidants: relationships in green cells. Physiol Plant 1997;100:224-33.
4. Foyer CH, LopezDelgado H, Dat JF, et al. Hydrogen peroxide- and glutathione-associated mechanisms of acclimatory stress tolerance and signalling. Physiol Plant 1997; 100:241-54.
5. Holmberg N, Bulow L. Improving stress tolerance in plants by gene transfer. Trends Plant Sci 1998;3:61-6.
6. Kirch HH, Nair A, Bartels D. Novel ABA- and dehydration-inducible aldehyde dehydrogenase genes isolated from the resurrection plant Craterostigma plantagineum and Arabidopsis thaliana. Plant J 2001;28:555-67.
7. Purvis AC. Role of the alternative oxidase in limiting superoxide production by plant mitochondria. Physiol Plant 1997;100:165-70.
8. Shen B, Jensen RG, Bohnert HJ. Increased resistance to oxidative stress in transgenic plants by targeting mannitol biosynthesis to chloroplasts. Plant Physiol 1997;113:1177-83.
9. Hoekstra FA, Golovina EA, Buitink J. Mechanisms of plant desiccation tolerance. Trends Plant Sci 2001;6:431-8.
10. Crowe JH, Oliver AE, Hoekstra FA, et al. Stabilization of dry membranes by mixtures of hydroxyethyl starch and glucose: the role of vitrification. Cryobiol 1997;35: 20-30.
11. Close TJ. Dehydrins: emergence of a biochemical role of a family of plant dehydration proteins. Physiol Plant 1996;97: 795-803.
12. Dure L, Crouch M, Ho THD, et al. Common amino acid sequence domains among LEA proteins of higher plants. Plant Mol Biol 1989;12:475-86.
13. Cheng ZQ, Targolli J, Huang XQ, et al. Wheat LEA genes, PMA80 and PMA 1959, enhance dehydration tolerance of transgenic rice (Oryza sativa L.). Mol Breed 2002;10:71-82.
14. Bahieldin A, Mahfouz HT, Eissa HF, et al. Field evaluation of transgenic wheat plants stably expressing the HVA1 gene for drought tolerance. Physiol Plant 2005;123:421-7.
15. Wehmeyer N, Vierling E. The expression of small heat shock proteins in seeds responds to discrete developmental signals and suggests a general protective role in desiccation tolerance. Plant Physiol 2000;122:1099-108.
16. Leyman B, Van Dijck PP, Thevelein JM. An unexpected plethora of trehalose biosynthesis genes in Arabidopsis thaliana. Trends Plant Sci 2001;6:510-3.
17. Zhu JK. Plant salt tolerance. Trends Plant Sci 2001;6:66-71.
18. Diab AA, Teulat-Merah B, This D, et al. Identification of drought-inducible genes and differentially expressed sequence tags in barley. Theor Appl Genet 2004;109:1417-25.
19. Teulat B, Borries C, This D. New QTLs identified for plant water status, water-soluble carbohydrate and osmotic adjustment in a barley population grown in a growth-chamber under two water regimes. Theor Appl Genet 2001; 103:161-70.
20. Teulat B, Merah O, Sirault X, et al. QTLs for grain carbon isotope discrimination in field-grown barley. Theor Appl Genet 2002;106:118-26.
21. Teulat B, Zoumarou-Wallis N, Rotter B, et al. QTL for relative water content in field-grown barley and their stability across Mediterranean environments. Theor Appl Genet 2003;108:181-8.
22. Jefferies SPP, Pallotta MA, Paull JG, et al. Mapping and validation of chromosome regions conferring boron toxicity tolerance in wheat (Triticum aestivum). Theor Appl Genet 2000; 101:767-77.
23. Zanetti S, Winzeler M, Keller M, et al. Genetic analysis of pre-harvest sprouting resistance in a wheat × spelt cross. Crop Sci 2000;40:1406-17.
24. Roy JK, Prasad M, Varshney RK, et al. Identification of a microsatellite on chromosomes 6B and a STS on 7D of bread wheat showing an association with preharvest sprouting tolerance. Theor Appl Genet 1999;99:336-40.
25. Vagujfalvi A, Crosatti C, Galiba G, et al. Two loci on wheat chromosome 5A regulate the differential cold-dependent expression of the cor14b gene in frost-tolerant and frost-sensitive genotypes. Mol Gen Genet 2000;263:194-200.
26. Snape JW, Sarma R, Quarrie SA, et al. Mapping genes for flowering time and frost tolerance in cereals using precise genetic stocks. Euphytica 2001;120:309-15.
27. St Burgos M, Messmer MM, Stamp PP, et al. Flooding tolerance of spelt (Triticum spelta L.) compared to wheat (Triticum aestivum L.) - a physiological and genetic approach. Euphytica 2001;122:287-95.
28. Riede CR, Anderson JA. Linkage of RFLP markers to an aluminum tolerance gene in wheat. Crop Sci 1996;36: 905-9.
29. Luo MC, Dvorak J. Molecular mapping of an aluminum tolerance locus on chromosome 4D of Chinese Spring wheat. Euphytica 1996;91:31-5.
30. + discrimination traits. Plant Cell Environ 1995;18:105-15.
31. Altinkut A, Gozukirmizi N. Search for microsatellite markers associated with water-stress tolerance in wheat through bulked segregant analysis. Mol Biotech 2003;23: 97-106.
32. Cattivelli L, Baldi PP, Crosatti C, et al. Chromosome regions and stress-related sequences involved in resistance to abiotic stress in Triticeae. Plant Mol Biol 2002; 48:649-65.
33. Quarrie SA, Steed A, Calestani C, et al. A high-density genetic map of hexaploid wheat (Triticum aestivum L.) from the cross Chinese Spring X SQ1 and its use to compare QTLs for grain yield across a range of environments. Theor Appl Genet 2005;110:865-80.
34. Verma VOL, Foulkes MJ, Worland AJ, et al. Mapping quantitative trait loci for flag leaf senescence as a yield determinant in winter wheat under optimal and drought-stressed environments. Euphytica 2004;135:255-63.
35. Farshadfar E, Mohammadi R, Farshadfar M, et al. Locating OTLs controlling field and laboratory predictors of drought tolerance in Agropyron using multiple selection index. Cereal Res Comm 2004;32:17-24.
36. Jefferies SPP, Barr AR, Karakousis A, et al. Mapping of chromosome regions conferring boron toxicity tolerance in barley (Hordeum vulgare L.). Theor Appl Genet 1999;98: 1293-303.
37. Pallotta MA, Graham RD, Langridge PP, et al. RFLP mapping of manganese efficiency in barley. Theor Appl Genet 2000;101:1100-8.
38. Reinheimer JL, Barr AR, Eglinton JK. QTL mapping of chromosomal regions conferring reproductive frost tolerance in barley (Hordeum vulgare L.). Theor Appl Genet 2004; 109:1267-74.
39. Zhang F, Chen G, Huang Q, et al. Genetic basis of barley caryopsis dormancy and seedling desiccation tolerance at the germination stage. Theor Appl Genet 2005;110:445-53.
40. Thomashow MF. Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Ann Rev Plant Physiol Plant Mol Biol 1999;50:571-99.
41. Laurie DA, Pratchett N, Bezant JH, et al. RFLP mapping of 5 major genes and 8 quantitative trait loci controlling flowering time in a winter × spring barley (Hordeum vulgare L.) cross. Genome 1995;38:575-85.
42. Campbell SA, Close TJ. Dehydrins: genes, proteins, and associations with phenotypic traits. New Phytologist 1997;137: 61-74.
43. Yu XM, Griffith M. Winter rye antifreeze activity increases in response to cold and drought, but not abscisic acid. Physiol Plant 2001;112:78-86.
44. Zhang HX, Blumwald E. Transgenic salt-tolerant tomato plants accumulate salt in foliage but not in fruit. Nature Biotech 2001;19:765-8.
45. Barbier-Brygoo H, Gaymard F, Rolland N, et al. Strategies to identify transport systems in plants. Trends Plant Sci 2001; 6:577-85.
46. Sivaguru M, Fujiwara T, Samaj J, et al. Aluminum-induced 1->3-beta-D-glucan inhibits cell-to-cell trafficking of molecules through plasmodesmata. A new mechanism of aluminum toxicity in plants. Plant Physiol 2000;124: 991-1005.
47. Ezaki B, Katsuhara M, Kawamura M, et al. Different mechanisms of four aluminum (Al)-resistant transgenes for Al toxicity in Arabidopsis. Plant Physiol 2001;127:918-27.
48. Graham RD, Welch RM, Bouis HE. Addressing micronutrient malnutrition through enhancing the nutritional quality of staple foods: principles, perspectives and knowledge gaps. Adv Agron 2001;70:77-142.
49. Huang CY, Barker SJ, Langridge PP, et al. Zinc deficiency up-regulates expression of high-affinity phosphate transporter genes in both phosphate-sufficient and -deficient barley roots. Plant Physiol 2000;124:415-22.
50. Knight H, Knight MR. Abiotic stress signalling pathways', specificity and cross-talk. Trends Plant Sci 2001;6:262-7.
51. Ishitani M, Xiong LM, Stevenson B, et al. Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis', interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell 1997;9:1935-49.
52. Urao T, Yakubov B, Satoh R, et al. A transmembrane hybrid-type histidine kinase in arabidopsis functions as an osmosensor. Plant Cell 1999;11:1743-54.
53. Vinocur B, Altman A. Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations. Current Opin Biotech 2005;16:123-32.
54. Pellegrineschi A, Reynolds M, Pacheco M, et al. Stress-induced expression in wheat of the Arabidopsis thaliana DREB1A gene delays water stress symptoms under greenhouse conditions. Genome 2004;47:493-500.
55. The Arabidopsis Information Resource, http://www.arabidopsis.org/Carnegie, Inst, Washington [25 October 2005, date last accessed].
56. Liu Q, Kasuga M, Sakuma Y, et al. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 1998;10: 1391-406.
57. Qin F, Sakuma Y, Li J, et al. Cloning and functional analysis of a novel DREB1/CBF transcription factor involved in cold-responsive gene expression in Zea mays L. Plant Cell Physiol 2004;45:1042-52.
58. Dubouzet JG, Sakuma Y, Ito Y, et al. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J 2003;33:751-63.
59. Shen YG, Zhang WK, He SJ, et al. An EREBP/AP2-type protein in Triticum aestivum was a DRE-binding transcription factor induced by cold, dehydration and ABA stress. Theor Appl Genet 2003;106:923-30.
60. Pellegrineschi A, Hoisington D. Results of Transgenic Wheat Trial Look Promising, http://www.cimmyt.org/english/wps/news/dreb.htm [25 October 2005, date last accessed].
61. Roosens NH, Thu TT, Iskandar HM, et al. Isolation of the ornithine-delta-aminotransferase cDNA and effect of salt stress on its expression in Arabidopsis thaliana. Plant Physiol 1998;117:263-71.
62. DIR 053/2004 - Field trial of genetically modified salt tolerant wheat on saline land, http://www.ogtr.gov.au/ir/dir053.htm, Office of the Gene Technology Regulator [30 January 2006, date last accessed].
63. Devos KM. Updating the 'Crop circle'. Current Opin Plant Biol 2005;8:155-62.
64. Ware D, Stein L. Comparison of genes among cereals. Current Opin Plant Biol 2003;6:121-7.
65. Sutton T, Whitford R, Baumann U, et al. The Ph2 pairing homoeologous locus of wheat (Triticum aestivum), identification of candidate meiotic genes using a comparative genetics approach. Plant J 2003;36:443-56.
66. Yu J, Hu SN, Wang J, et al. A draft sequence of the rice genome (Oryza sativa L. ssp indica). Science 2002;296: 79-92.
67. Goff SA, Ricke D, Lan TH, et al. A draft sequence of the rice genome (Oryzasativa L. ssp japonica). Science 2002;296: 92-100.
68. Feuillet C, Travella S, Stein N, et al. Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome. Proc Natl Acad Sci USA 2003;100:15253-8.
69. Yan L, Loukoianov A, Tranquilli G, et al. Positional cloning of the wheat vernalization gene VRN1. Proc Natl Acad Sci USA 2003;100:6263-8.
70. Ahloowalia BS, Maluszynski M. Induced mutations - a new paradigm in plant breeding. Euphytica 2001;118: 167-73.
71. Caldwell DG, McCallum N, Shaw PP, et al. A structured mutant population for forward and reverse genetics in Barley (Hordeum vulgare L.). Plant J 2004;40:143-50.
72. Slade AJ, Fuerstenberg SI, Loeffler D, et al. A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING. Nature Biotech 2005;23:75-81.
73. Cooper LD, Marquez-Cedillo L, Singh J, et al. Mapping Ds insertions in barley using a sequence-based approach. Mol Genet Genom 2004;272:181-93.
74. Liu X, Shi J, Zhang XY, et al. Screening salt tolerance germplasms and tagging the tolerance gene(s) using microsatellite (SSR) markers in wheat. Acta Botanica Sinica 2001;43:948-54.
75. Wang RRC, Li XM, Hu ZM, et al. Development of salinity-tolerant wheat recombinant lines from a wheat disomic addition line carrying a Thinopyrum junceum chromosome. Intl J Plant Sci 2003;164:25-33.
76. Tyankova N, Zagorska N, Dimitrov B. Study of drought response in wheat cultivars, stabilized wheat-wheatgrass lines and intergeneric wheat amphidiploids cultivated in vitro. Cereal Res Comm 2004;32:99-105.
77. Moghaddam AE, Trethowan RM, William HM, et al. Assessment of genetic diversity in bread wheat genotypes for tolerance to drought using AFLPs and agronomic traits. Euphytica 2005;141:147-56.
78. Peleg Z, Fahima T, Abbo S, et al. Genetic diversity for drought resistance in wild emmer wheat and its ecogeographical associations. Plant Cell Environ 2005;28:176-91.
79. Rizza F, Badeck FW, Cattivelli L, et al. Use of a water stress index to identify barley genotypes adapted to rainfed and irrigated conditions. Crop Sci 2004;44:2127-37.
80. Forster BPP, Ellis RPP, Moir J, et al. Genotype and phenotype associations with drought tolerance in barley tested in North Africa. Ann Appl Biol 2004;144: 157-68.
81. Nevo E, Beharav A, Meyer RC, et al. Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biol J Linnean Soc 2005;84:205-24.
82. Powell W, Langridge P. Unfashionable species flourish in the 21st Century. Genome Biol 2004;5:233.
83. Zhang HN, Sreenivasulu N, Weschke W, et al. Large-scale analysis of the barley transcriptome based on expressed sequence tags. Plant J 2004;40:276-90.
84. Mochida K, Yamazaki Y, Ogihara Y. Discrimination of homologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags. Mol Genet Genom 2004;270:371-7.
85. Leader DJ. Transcriptional analysis and functional genomics in wheat. J Cereal Sci 2005;41:149-63.
86. Close TJ, Wanamaker SI, Caldo RA, et al. A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiol 2004;134:960-8.
87. Hazen SPP, Hawley RM, Davis GL, et al. Quantitative trait loci and comparative genomics of cereal cell wall composition. Plant Physiol 2005;132:263-71.
88. Meyers B. Rice MPSS site, http://mpss.udel.edu/rice/, University of Delaware [25 October 2005, date last accessed].
89. Bahrman N, Negroni L, Jaminon O, et al. Wheat leaf proteome analysis using sequence data of proteins separated by two-dimensional electrophoresis. Proteomics 2004;4: 2672-84.
90. Skylas D, Van Dyk D, Wrigley CW. Proteomics of wheat grain. J Cereal Sci 2005;41:165-79.
91. Woo SH, Kimura M, Higa-Nishiyama A, et al. Proteome analysis of wheat lemma. Biosci Biotech Biochem 2003;67: 2486-91.
92. Salekdeh GH, Siopongco J, Wade LJ, et al. A proteomic approach to analyzing drought- and salt-responsiveness in rice. Field Crops Res 2002;76:199-219.
93. Sato S, Soga T, Nishioka T, et al. Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. Plant J 2004;40: 151-63.