-
1
-
-
0025222978
-
A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids
-
O'Neil KT, DeGrado WF. A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids. Science 1990;250:646-651.
-
(1990)
Science
, vol.250
, pp. 646-651
-
-
O'Neil, K.T.1
DeGrado, W.F.2
-
2
-
-
0026058806
-
Physical reasons for secondary structure stability: Alpha-helices in short peptides
-
Finkelstein AV, Badretdinov AY, Ptitsyn OB. Physical reasons for secondary structure stability: alpha-helices in short peptides. Proteins 1991;10:287-299.
-
(1991)
Proteins
, vol.10
, pp. 287-299
-
-
Finkelstein, A.V.1
Badretdinov, A.Y.2
Ptitsyn, O.B.3
-
3
-
-
0027236794
-
Structural basis of amino acid alpha helix propensity
-
Blaber M, Zhang XJ, Matthews BW. Structural basis of amino acid alpha helix propensity. Science 1993;260:1637-1640.
-
(1993)
Science
, vol.260
, pp. 1637-1640
-
-
Blaber, M.1
Zhang, X.J.2
Matthews, B.W.3
-
4
-
-
0029958659
-
Structure-based thermodynamic scale of alpha-helix propensities in amino acids
-
Luque I, Mayorga OL, Freire E. Structure-based thermodynamic scale of alpha-helix propensities in amino acids. Biochemistry 1996;35:13681-13688.
-
(1996)
Biochemistry
, vol.35
, pp. 13681-13688
-
-
Luque, I.1
Mayorga, O.L.2
Freire, E.3
-
5
-
-
0031127043
-
Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: Comparison with Zimm-Bragg and Lifson-Roig formalisms
-
Munoz V, Serrano L. Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: comparison with Zimm-Bragg and Lifson-Roig formalisms. Biopolymers 1997;41:495-509.
-
(1997)
Biopolymers
, vol.41
, pp. 495-509
-
-
Munoz, V.1
Serrano, L.2
-
6
-
-
0017881332
-
The alpha-helix dipole and the properties of proteins
-
Hol WG, van Duijnen PT, Berendsen HJ. The alpha-helix dipole and the properties of proteins. Nature 1978;273:443-446.
-
(1978)
Nature
, vol.273
, pp. 443-446
-
-
Hol, W.G.1
Van Duijnen, P.T.2
Berendsen, H.J.3
-
7
-
-
0025260032
-
Side chain contributions to the stability of alpha-helical structure in peptides
-
Lyu PC, Liff MI, Marky LA, Kallenbach NR. Side chain contributions to the stability of alpha-helical structure in peptides. Science 1990;250:669-673.
-
(1990)
Science
, vol.250
, pp. 669-673
-
-
Lyu, P.C.1
Liff, M.I.2
Marky, L.A.3
Kallenbach, N.R.4
-
8
-
-
0026709329
-
Alpha-helix stability in proteins. I. Empirical correlations concerning substitution of side-chains at the N and C-caps and the replacement of alanine by glycine or serine at solvent-exposed surfaces
-
Serrano L, Sancho J, Hirshberg M, Fersht AR. Alpha-helix stability in proteins. I. Empirical correlations concerning substitution of side-chains at the N and C-caps and the replacement of alanine by glycine or serine at solvent-exposed surfaces. J Mol Biol 1992;227:544-559.
-
(1992)
J Mol Biol
, vol.227
, pp. 544-559
-
-
Serrano, L.1
Sancho, J.2
Hirshberg, M.3
Fersht, A.R.4
-
9
-
-
0017292056
-
The alpha-helix as an electric macro-dipole
-
Wada A. The alpha-helix as an electric macro-dipole. Adv Biophys 1976:1-63.
-
(1976)
Adv Biophys
, pp. 1-63
-
-
Wada, A.1
-
10
-
-
0024290488
-
Helix signals in proteins
-
Presta LG, Rose GD. Helix signals in proteins. Science 1988;240:1632-1641.
-
(1988)
Science
, vol.240
, pp. 1632-1641
-
-
Presta, L.G.1
Rose, G.D.2
-
11
-
-
0027204024
-
Helix stop signals in proteins and peptides: The capping box
-
Harper ET, Rose GD. Helix stop signals in proteins and peptides: the capping box. Biochemistry 1993;32:7605-7609.
-
(1993)
Biochemistry
, vol.32
, pp. 7605-7609
-
-
Harper, E.T.1
Rose, G.D.2
-
12
-
-
0029020484
-
N- and C-capping preferences for all 20 amino acids in alpha-helical peptides
-
Doig AJ, Baldwin RL. N- and C-capping preferences for all 20 amino acids in alpha-helical peptides. Protein Sci 1995;4:1325-1336.
-
(1995)
Protein Sci
, vol.4
, pp. 1325-1336
-
-
Doig, A.J.1
Baldwin, R.L.2
-
13
-
-
0028173780
-
Rules for a-helix termination by glycine
-
Aurora R, Srinivasan R, Rose GD. Rules for a-helix termination by glycine. Science 1994;264:1126-1130.
-
(1994)
Science
, vol.264
, pp. 1126-1130
-
-
Aurora, R.1
Srinivasan, R.2
Rose, G.D.3
-
14
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of α helices
-
Richardson JS, Richardson DC. Amino acid preferences for specific locations at the ends of α helices. Science 1988;240:1648-1652.
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
15
-
-
0038275884
-
Testing hypotheses about determinants of protein structure with high-precision, high-throughput stability measurements and statistical modeling
-
Yi F, Sims DA, Pielak GJ, Edgell MH. Testing hypotheses about determinants of protein structure with high-precision, high-throughput stability measurements and statistical modeling. Biochemistry 2003;42:7594-7603.
-
(2003)
Biochemistry
, vol.42
, pp. 7594-7603
-
-
Yi, F.1
Sims, D.A.2
Pielak, G.J.3
Edgell, M.H.4
-
16
-
-
0037295565
-
Dynamic effects of mutations within two loops of cytochrome c551 from Pseudomonas aeruginosa
-
Ceruso MA, Grottesi A, Di Nola A. Dynamic effects of mutations within two loops of cytochrome c551 from Pseudomonas aeruginosa. Proteins 2003;50:222-229.
-
(2003)
Proteins
, vol.50
, pp. 222-229
-
-
Ceruso, M.A.1
Grottesi, A.2
Di Nola, A.3
-
17
-
-
0038810233
-
Correlated motion and the effect of distal mutations in dihydrofolate reductase
-
Rod TH, Radkiewicz JL, Brooks 3rd CL. Correlated motion and the effect of distal mutations in dihydrofolate reductase. Proc Natl Acad Sci USA 2003;100:6980-6985.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6980-6985
-
-
Rod, T.H.1
Radkiewicz, J.L.2
Brooks III, C.L.3
-
18
-
-
0032529585
-
Dynamic structure of subtilisin-eglin c complex studied by normal mode analysis
-
Ishida H, Jochi Y, Kidera A. Dynamic structure of subtilisin-eglin c complex studied by normal mode analysis. Proteins 1998;32:324-333.
-
(1998)
Proteins
, vol.32
, pp. 324-333
-
-
Ishida, H.1
Jochi, Y.2
Kidera, A.3
-
19
-
-
4744347909
-
Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor eglin c
-
Clarkson MW, Lee AL. Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor eglin c. Biochemistry 2004;43:12448-12458.
-
(2004)
Biochemistry
, vol.43
, pp. 12448-12458
-
-
Clarkson, M.W.1
Lee, A.L.2
-
20
-
-
0027339381
-
13C NMR study of the effects of mutation on the tryptophan dynamics in chymotrypsin inhibitor 2: Correlations with structure and stability
-
Matthews SJ, Jandu SK, Leatherbarrow RJ. 13C NMR study of the effects of mutation on the tryptophan dynamics in chymotrypsin inhibitor 2: correlations with structure and stability. Biochemistry 1993;32:657-662.
-
(1993)
Biochemistry
, vol.32
, pp. 657-662
-
-
Matthews, S.J.1
Jandu, S.K.2
Leatherbarrow, R.J.3
-
21
-
-
0019270387
-
Structure of the elastase-cathepsin G inhibitor of the leech Hirudo medicinalis
-
Seemuller U, Eulitz M, Fritz H, Strobl A. Structure of the elastase-cathepsin G inhibitor of the leech Hirudo medicinalis. Hoppe Seylers Z Physiol Chem 1980;361:1841-1846.
-
(1980)
Hoppe Seylers Z Physiol Chem
, vol.361
, pp. 1841-1846
-
-
Seemuller, U.1
Eulitz, M.2
Fritz, H.3
Strobl, A.4
-
22
-
-
17744395510
-
Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent
-
Day R, Daggett V. Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent. Protein Sci 2005;14:1242-1252.
-
(2005)
Protein Sci
, vol.14
, pp. 1242-1252
-
-
Day, R.1
Daggett, V.2
-
23
-
-
2342614722
-
Counteraction of urea-induced protein denaturation by trimethylamine N-oxide: A chemical chaperone at atomic resolution
-
Bennion BJ, Daggett V. Counteraction of urea-induced protein denaturation by trimethylamine N-oxide: a chemical chaperone at atomic resolution. Proc Natl Acad Sci USA 2004;101:6433-6438.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6433-6438
-
-
Bennion, B.J.1
Daggett, V.2
-
24
-
-
0142153202
-
Structure-oriented rational design of chymotrypsin inhibitor models
-
Mucsi Z, Gaspari Z, Orosz G, Perczel A. Structure-oriented rational design of chymotrypsin inhibitor models. Protein Eng 2003;16:673-681.
-
(2003)
Protein Eng
, vol.16
, pp. 673-681
-
-
Mucsi, Z.1
Gaspari, Z.2
Orosz, G.3
Perczel, A.4
-
25
-
-
0035223268
-
Molecular dynamics simulations of protein unfolding/folding
-
Daggett V. Molecular dynamics simulations of protein unfolding/folding. Methods Mol Biol 2001;168:215-247.
-
(2001)
Methods Mol Biol
, vol.168
, pp. 215-247
-
-
Daggett, V.1
-
26
-
-
0035029408
-
Conformational dynamics of subtilisin-chymotrypsin inhibitor 2 complex by coarse-grained simulations
-
Kurt N, Haliloglu T. Conformational dynamics of subtilisin-chymotrypsin inhibitor 2 complex by coarse-grained simulations. J Biomol Struct Dyn 2001;18:713-731.
-
(2001)
J Biomol Struct Dyn
, vol.18
, pp. 713-731
-
-
Kurt, N.1
Haliloglu, T.2
-
27
-
-
0345281586
-
Conformational dynamics of chymotrypsin inhibitor 2 by coarse-grained simulations
-
Kurt N, Haliloglu T. Conformational dynamics of chymotrypsin inhibitor 2 by coarse-grained simulations. Proteins 1999;37:454-464.
-
(1999)
Proteins
, vol.37
, pp. 454-464
-
-
Kurt, N.1
Haliloglu, T.2
-
28
-
-
0029586380
-
Investigation of the solution structure of chymotrypsin inhibitor 2 using molecular dynamics: Comparison to x-ray crystallographic and NMR data
-
Li A, Daggett V. Investigation of the solution structure of chymotrypsin inhibitor 2 using molecular dynamics: comparison to x-ray crystallographic and NMR data. Protein Eng 1995;8:1117-1128.
-
(1995)
Protein Eng
, vol.8
, pp. 1117-1128
-
-
Li, A.1
Daggett, V.2
-
29
-
-
0028848469
-
Search for nucleation sites in smaller fragments of chymotrypsin inhibitor 2
-
Itzhaki LS, Neira JL, Ruiz-Sanz J, de Prat-Gay G, Fersht AR. Search for nucleation sites in smaller fragments of chymotrypsin inhibitor 2. J Mol Biol 1995;254:289-304.
-
(1995)
J Mol Biol
, vol.254
, pp. 289-304
-
-
Itzhaki, L.S.1
Neira, J.L.2
Ruiz-Sanz, J.3
De Prat-Gay, G.4
Fersht, A.R.5
-
30
-
-
0031552590
-
Hydrogen exchange in chymotrypsin inhibitor 2 probed by denaturants and temperature
-
Itzhaki LS, Neira JL, Fersht AR. Hydrogen exchange in chymotrypsin inhibitor 2 probed by denaturants and temperature. J Mol Biol 1997;270:89-98.
-
(1997)
J Mol Biol
, vol.270
, pp. 89-98
-
-
Itzhaki, L.S.1
Neira, J.L.2
Fersht, A.R.3
-
31
-
-
0031296703
-
Strain in the folding nucleus of chymotrypsin inhibitor 2
-
Ladurner AG, Itzhaki LS, Fersht AR. Strain in the folding nucleus of chymotrypsin inhibitor 2. Fold Des 1997;2:363-368.
-
(1997)
Fold des
, vol.2
, pp. 363-368
-
-
Ladurner, A.G.1
Itzhaki, L.S.2
Fersht, A.R.3
-
33
-
-
0027092679
-
The solution structure of eglin c based on measurements of many NOEs and coupling constants and its comparison with X-ray structures
-
Hyberts SG, Goldberg MS, Havel TF, Wagner G. The solution structure of eglin c based on measurements of many NOEs and coupling constants and its comparison with X-ray structures. Protein Sci 1992;1:736-751.
-
(1992)
Protein Sci
, vol.1
, pp. 736-751
-
-
Hyberts, S.G.1
Goldberg, M.S.2
Havel, T.F.3
Wagner, G.4
-
34
-
-
0026597973
-
Crystal and molecular structure of the bovine alpha-chymotrypsin-eglin c complex at 2.0 Å resolution
-
Frigerio F, Coda A, Pugliese L, Lionetti C, Menegatti E, Amiconi G, Schnebli HP, Ascenzi P, Bolognesi M. Crystal and molecular structure of the bovine alpha-chymotrypsin-eglin c complex at 2.0 Å resolution. J Mol Biol 1992;225:107-123.
-
(1992)
J Mol Biol
, vol.225
, pp. 107-123
-
-
Frigerio, F.1
Coda, A.2
Pugliese, L.3
Lionetti, C.4
Menegatti, E.5
Amiconi, G.6
Schnebli, H.P.7
Ascenzi, P.8
Bolognesi, M.9
-
35
-
-
0023643147
-
The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry
-
Bode W, Papamokos E, Musil D. The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry. Eur J Biochem 1987;166:673-692.
-
(1987)
Eur J Biochem
, vol.166
, pp. 673-692
-
-
Bode, W.1
Papamokos, E.2
Musil, D.3
-
36
-
-
0000869965
-
Complex between the subtilisin from a mesophilic bacterium and the leech inhibitor eglin-c
-
Dauter Z, Betzel C, Genov N, Pipon N, Wilson KS. Complex between the subtilisin from a mesophilic bacterium and the leech inhibitor eglin-c. Acta Crystallogr B Biol Crystallogr 1991;47:707-730.
-
(1991)
Acta Crystallogr B Biol Crystallogr
, vol.47
, pp. 707-730
-
-
Dauter, Z.1
Betzel, C.2
Genov, N.3
Pipon, N.4
Wilson, K.S.5
-
37
-
-
0008524099
-
Crystallographic refinement by incorporation of molecular dynamics: Thermostable serine protease thermitase complexed with eglin c
-
Gros P, Fujinaga M, Dijkstra BW, Kalk KH, Hol WG. Crystallographic refinement by incorporation of molecular dynamics: thermostable serine protease thermitase complexed with eglin c. Acta Crystallogr B Biol Crystallogr 1989;45:488-499.
-
(1989)
Acta Crystallogr B Biol Crystallogr
, vol.45
, pp. 488-499
-
-
Gros, P.1
Fujinaga, M.2
Dijkstra, B.W.3
Kalk, K.H.4
Hol, W.G.5
-
38
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
39
-
-
0029981188
-
Structure of the transition state for folding of a protein derived from experiment and simulation
-
Daggett V, Li A, Itzhaki LS, Otzen DE, Fersht AR. Structure of the transition state for folding of a protein derived from experiment and simulation. J Mol Biol 1996;257:430-440.
-
(1996)
J Mol Biol
, vol.257
, pp. 430-440
-
-
Daggett, V.1
Li, A.2
Itzhaki, L.S.3
Otzen, D.E.4
Fersht, A.R.5
-
40
-
-
0029963345
-
Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations
-
Li A, Daggett V. Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations. J Mol Biol 1996;257:412-429.
-
(1996)
J Mol Biol
, vol.257
, pp. 412-429
-
-
Li, A.1
Daggett, V.2
-
41
-
-
0036968512
-
Increasing temperature accelerates protein unfolding without changing the pathway of unfolding
-
Day R, Bennion BJ, Ham S, Daggett V. Increasing temperature accelerates protein unfolding without changing the pathway of unfolding. J Mol Biol 2002;322:189-203.
-
(2002)
J Mol Biol
, vol.322
, pp. 189-203
-
-
Day, R.1
Bennion, B.J.2
Ham, S.3
Daggett, V.4
-
42
-
-
0036306054
-
Probing the energy landscape of protein folding/unfolding transition states
-
De Jong D, Riley R, Alonso DO, Daggett V. Probing the energy landscape of protein folding/unfolding transition states. J Mol Biol 2002;319:229-242.
-
(2002)
J Mol Biol
, vol.319
, pp. 229-242
-
-
De Jong, D.1
Riley, R.2
Alonso, D.O.3
Daggett, V.4
-
43
-
-
0035836687
-
Protein folding from a highly disordered denatured state: The folding pathway of chymotrypsin inhibitor 2 at atomic resolution
-
Kazmirski SL, Wong KB, Freund SM, Tan YJ, Fersht AR, Daggett V. Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution. Proc Natl Acad Sci USA 2001;98:4349-4354.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4349-4354
-
-
Kazmirski, S.L.1
Wong, K.B.2
Freund, S.M.3
Tan, Y.J.4
Fersht, A.R.5
Daggett, V.6
-
44
-
-
0034657550
-
Computer simulations of protein folding by targeted molecular dynamics
-
Ferrara P, Apostolakis J, Caflisch A. Computer simulations of protein folding by targeted molecular dynamics. Proteins 2000;39:252-260.
-
(2000)
Proteins
, vol.39
, pp. 252-260
-
-
Ferrara, P.1
Apostolakis, J.2
Caflisch, A.3
-
45
-
-
0032555115
-
Synergy between simulation and experiment in describing the energy landscape of protein folding
-
Ladurner AG, Itzhaki LS, Daggett V, Fersht AR. Synergy between simulation and experiment in describing the energy landscape of protein folding. Proc Natl Acad Sci USA 1998;95:8473-8478.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 8473-8478
-
-
Ladurner, A.G.1
Itzhaki, L.S.2
Daggett, V.3
Fersht, A.R.4
-
46
-
-
0035814880
-
Direct comparison of experimental and calculated folding free energies for hydrophobic deletion mutants of chymotrypsin inhibitor 2: Free energy perturbation calculations using transition and denatured states from molecular dynamics simulations of unfolding
-
Pan Y, Daggett V. Direct comparison of experimental and calculated folding free energies for hydrophobic deletion mutants of chymotrypsin inhibitor 2: free energy perturbation calculations using transition and denatured states from molecular dynamics simulations of unfolding. Biochemistry 2001;40:2723-2731.
-
(2001)
Biochemistry
, vol.40
, pp. 2723-2731
-
-
Pan, Y.1
Daggett, V.2
-
47
-
-
0345707599
-
Increased rigidity of eglin c at acidic pH: Evidence from NMR spin relaxation and MD simulations
-
Hu H, Clarkson MW, Hermans J, Lee AL. Increased rigidity of eglin c at acidic pH: evidence from NMR spin relaxation and MD simulations. Biochemistry 2003;42:13856-13868.
-
(2003)
Biochemistry
, vol.42
, pp. 13856-13868
-
-
Hu, H.1
Clarkson, M.W.2
Hermans, J.3
Lee, A.L.4
-
48
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus. M. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J Comp Chem 1983;4:187-217.
-
(1983)
J Comp Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
49
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML. Comparison of simple potential functions for simulating liquid water. J Chem Phys 1983;79:926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
50
-
-
0000224283
-
CHARMM: The energy function and its parameterization with an overview of the program
-
Schleyer PvR, Schreiner PR, Allinger NL, Clark T, Gasteiger J, Kollman P, III HFS, editors. Chichester: Wiley
-
MacKerell Jr. AD, Brooks B, Brooks III CL, Nilsson L, Roux B, Won Y, Karplus M. CHARMM: the energy function and its parameterization with an overview of the program. In: Schleyer PvR, Schreiner PR, Allinger NL, Clark T, Gasteiger J, Kollman P, III HFS, editors. The encyclopedia of computational chemistry, Volume 1. Chichester: Wiley; 1998. p 271-277.
-
(1998)
The Encyclopedia of Computational Chemistry
, vol.1
, pp. 271-277
-
-
MacKerell Jr., A.D.1
Brooks, B.2
Brooks III, C.L.3
Nilsson, L.4
Roux, B.5
Won, Y.6
Karplus, M.7
-
51
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 1977;23:327-341.
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
52
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG. A smooth particle mesh Ewald method. J Chem Phys 1995;103:8577-8593.
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
53
-
-
0026076090
-
Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations
-
Ichiye T, Karplus M. Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations. Proteins 1991;11:205-217.
-
(1991)
Proteins
, vol.11
, pp. 205-217
-
-
Ichiye, T.1
Karplus, M.2
-
54
-
-
0033955055
-
I. Protein dynamics in enzymatic catalysis: Exploration of dihydrofolate reductase
-
Radkiewicz JL, Brooks CL. I. Protein dynamics in enzymatic catalysis: exploration of dihydrofolate reductase. J Am Chem Soc 2000;122:225-231.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 225-231
-
-
Radkiewicz, J.L.1
Brooks, C.L.2
-
55
-
-
0029623152
-
Frequency spectrum of NH bonds in eglin c from spectral density mapping at multiple fields
-
Peng JW, Wagner G. Frequency spectrum of NH bonds in eglin c from spectral density mapping at multiple fields. Biochemistry 1995;34:16733-16752.
-
(1995)
Biochemistry
, vol.34
, pp. 16733-16752
-
-
Peng, J.W.1
Wagner, G.2
-
56
-
-
0033988897
-
Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex
-
Lee AL, Kinnear SA, Wand AJ. Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex. Nat Struct Biol 2000;7:72-77.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 72-77
-
-
Lee, A.L.1
Kinnear, S.A.2
Wand, A.J.3
-
57
-
-
0035901519
-
An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs
-
Loh AP, Pawley N, Nicholson LK, Oswald RE. An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs. Biochemistry 2001;40:4590-4600.
-
(2001)
Biochemistry
, vol.40
, pp. 4590-4600
-
-
Loh, A.P.1
Pawley, N.2
Nicholson, L.K.3
Oswald, R.E.4
-
58
-
-
0036385729
-
Side-chain dynamics of the SAP SH2 domain correlate with a binding hot spot and a region with conformational plasticity
-
Finerty Jr. PJ. Muhandiram R, Forman-Kay JD. Side-chain dynamics of the SAP SH2 domain correlate with a binding hot spot and a region with conformational plasticity. J Mol Biol 2002;322:605-620.
-
(2002)
J Mol Biol
, vol.322
, pp. 605-620
-
-
Finerty Jr., P.J.1
Muhandiram, R.2
Forman-Kay, J.D.3
-
59
-
-
0347753736
-
Ligand-dependent dynamics and intramolecular signaling in a PDZ domain
-
Fuentes EJ, Der CJ, Lee AL. Ligand-dependent dynamics and intramolecular signaling in a PDZ domain. J Mol Biol 2004;335:1105-1115.
-
(2004)
J Mol Biol
, vol.335
, pp. 1105-1115
-
-
Fuentes, E.J.1
Der, C.J.2
Lee, A.L.3
|