Structure-based thermodynamic scale of α-helix propensities in amino acids

Biochemistry

Volumn 35, Issue 42, 1996, Pages 13681-13688

  Luque, Irene ^a   Mayorga, Obdulio L ^a   Freire, Ernesto ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

ALPHA HELIX; ARTICLE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE; THERMODYNAMICS;

AMINO ACIDS; LEUCINE ZIPPERS; MURAMIDASE; MUTATION; PEPTIDES; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEINS; REGRESSION ANALYSIS; RIBONUCLEASES; THERMODYNAMICS;

EID: 0029958659     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi961319s     Document Type: Article

References (37)

1. Baldwin, R. L. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 8069-8072.
2. Baldwin, R. L. (1995) Biophys. Chem. 55, 127-135.
3. Blaber, M., Zhang, X.-j., Lindstrom, J. L., Pepiot, S. D., Baase, W. A., & Matthews, B. W. (1994) J. Mol. Biol. 235, 600-624.
4. Cabani, S., Gianni, P., Mollica, V., & Lepori, L. (1981) J. Solution Chem. 10, 563-595.
5. Chakrabartty, V., Kortemme, T., & Baldwin, R. L. (1994) Protein Sci. 3, 843-852.
6. Connolly, M. L. (1983) Science 221, 709-713.
7. Creamer, T. P., & Rose, G. D. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 5937-5941.
8. Creamer, T. P., Srinivasan, R., & Rose, G. D. (1995) Biochemistry 34, 16245-16250.
9. DAquino, J. A., Gómez, J., Hilser, V. J., Lee, K. H., Amzel, L. M., & Freire, E. (1996) Proteins: Struct., Fund., Genet. 25, 143-156.
10. Freire, E. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 141-165.
11. Gomez, J., & Freire, E. (1995) J. Mol. Biol. 252, 337-350.
12. Gomez, J., Hilser, J. V., Xie, D., & Freire, E. (1995) Proteins: Struct., Funct., Genet. 22, 404-412.
13. Habermann, S. M., & Murphy, K. P. (1996) Protein Sci. 5, 1229-1239.
14. Hilser, V. J., Gomez, J., & Freire, E. (1996) Proteins: Struct., Funct., Genet. (in press).
15. Horovitz, A., Matthews, J. M., & Fersht, A. R. (1992) J. Mol. Biol. 227, 560-568.
16. Jorgensen, W. L., & Tirado-Rives, J. (1988) J. Am. Chem. Soc. 110, 1657-1666.
17. Leach, S. J., Nemethy, G., & Scheraga, H. A. (1966) Biopolymers 4, 369-407.
18. Lee, B., & Richards, F. M. (1971) J. Mol. Biol. 55, 379-400.
19. Lee, K. H., Xie, D., Freire, E., & Amzel, L. M. (1994) Proteins: Struct., Funct., Genet. 20, 68-84.
20. Lyu, P. C., Liff, M. I., Marky, L. A., & Kallenbach, N. R. (1990) Science 250, 669-673.
21. Muñoz, V., & Serrano, L. (1995a) J. Mol. Biol. 245, 275-296.
22. Muñoz, V., & Serrano, L. (1995b) J. Mol. Biol. 245, 297-308.
23. Murphy, K. P., & Gill, S. J. (1989) Thermochim. Acta 139, 279-290.
24. Murphy, K. P., & Freire, E. (1992) Adv. Protein Chem. 43, 313-361.
25. Murphy, K. P., Bhakuni, V., Xie, D., & Freire, E. (1992) J. Mol. Biol. 227, 293-306.
26. Murphy, K. P., Xie, D., Garcia, K. C., Amzel, L. M., & Freire, E. (1993) Proteins: Struct., Funct., Genet. 15, 113-120.
27. O'Neil, K., & DeGrado, W. (1990) Science 250, 646-651.
28. Ooi, T., Oobatake, M., Némethy, G., & Scheraga, H. A. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 3086-3090.
29. Scholtz, J. M., Marqusee, S., Baldwin, R. L., York, E. J., Stewart, J. M., Santoro, M., & Bolen, D. W. (1991) Proc. Natl. Acad. Sci. USA. 88, 2854-2858.
30. Shrake, A., & Rupley, J. A. (1973) J. Mol. Biol. 79, 351-372.
31. Spolar, R. S., & Record, M. T. (1994) Science 263, 777-784.
32. Spolar, R. S., Livingstone, J. R., & Record, M. T., Jr. (1992) Biochemistry 31, 3947-3955.
33. Weiner, S. J., Kollman, P. A., Case, D. A., Singh, U. C., Ghio, C., Alagona, G., Profeta, S., & Weiner, P. A. (1984) J. Am. Chem. Soc. 106, 765-784.
34. Wimley, W. C., Creamer, T. P., & White, S. H. (1996) Biochemistry 35, 5109-5124.
35. Xie, D., & Freire, E. (1994a) Proteins: Struct., Funct., Genet. 19, 291-301.
36. Xie, D., & Freire, E. (1994b) J. Mol. Biol. 242, 62-80.
37. Xie, D., Fox, R., & Freire, E. (1994) Protein Sci. 3, 2175-2184.