Nitrite production by Nitrosomonas europaea and Nitrosospira sp. AV in soils at different solution concentrations of ammonium

Soil Biology and Biochemistry

Volumn 38, Issue 4, 2006, Pages 828-836

  Taylor, Anne E ^a   Bottomley, Peter J ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

Ammonia oxidizing bacteria; Growth of Nitrosomonas europaea in sterile soil; Ks for NH 3 in soil; Nitrosomonas europaea; Nitrosospira sp. AV; Soil solution NH4+ concentration

Indexed keywords

AMMONIA; AMMONIUM COMPOUNDS; BACTERIA; CARBON; CONCENTRATION (PROCESS); ORGANIC COMPOUNDS; OXIDATION; SOILS;

AMMONIA OXIDIZING BACTERIA; BACTERIAL SUSPENSIONS; GROWTH OF NITROSOMONAS EUROPAEA IN STERILE SOIL; KS FOR NH 3 IN SOIL; NITRITE; NITROSOMONAS EUROPAEA; NITROSOSPIRA SP. AV; SOIL SOLUTION NH4+ CONCENTRATION;

NITRIFICATION;

AMMONIUM; BACTERIUM; NITRATE; OXIDATION;

BACTERIA (MICROORGANISMS); NITROSOMONADALES; NITROSOMONAS; NITROSOMONAS EUROPAEA; NITROSOSPIRA; NITROSOSPIRA SP.;

EID: 33645234721     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2005.08.001     Document Type: Article

References (42)

1. E.F. Armstrong, and J.I. Prosser Growth of Nitrosomonas europaea on ammonia-treated vermiculite Soil Biology and Biochemistry 20 1988 409 411
2. D.J. Arp, L.A. Sayavedra-Soto, and N.G. Hommes Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea Archives of Microbiology 178 2002 250 255
3. L.W. Belser, and E.L. Schmidt Diversity in the ammonia-oxidizing nitrifier population of a soil Applied and Environmental Microbiology 36 1978 584 588
4. L.W. Belser, and E.L. Schmidt Growth and oxidation kinetics of three genera of ammonia oxidizing nitrifiers FEMS Microbiology Letters 7 1980 213 216
5. E. Bock, H.P. Koops, and H. Harms Cell biology of nitrifying bacteria J.I. Prosser Nitrification 1986 Society for General Microbiology (IRL Press) Washington D.C. 17 39
6. A. Bollmann, and H.J. Laanbroek Continuous culture enrichments of ammonia-oxidizing bacteria at low ammonium concentrations FEMS Microbiology Ecology 37 211 2001 221
7. A. Bollmann, M.J. Bär-Gilissen, and H.J. Laanbroek Growth at low ammonium concentrations and starvation response as potential factors involved in niche differentiation among ammonia-oxidizing bacteria Applied and Environmental Microbiology 68 2002 4751 4757
8. Booth, M. S., Stark, J. M., Rastetter, E., (2005). Controls on nitrogen cycling in terrestrial ecosystems: A synthetic analysis of literature data. Ecological Monographs 75, 139-157.
9. A.M. Briones, S. Okabe, Y. Umemiya, N.-B. Ramsing, W. Reichardt, and H. Okuyama Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice Applied and Environmental Microbiology 68 2002 3067 3075
10. P. Chain, J. Lamerdin, F. Larimer, W. Regala, V. Lao, M. Land, L. Hauser, A. Hooper, M. Klotz, J. Norton, L. Sayavedra-Soto, D. Arciero, N. Hommes, M. Whittaker, and D. Arp Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea Journal of Bacteriology 185 2003 2759 2773
11. H.D. Chapman Cation-Exchange Capacity C.A. Black Methods of Soil Analysis Part 2- Chemical and microbiological properties 1965 American Society of Agronomy, Inc Madison, Wisconsin 891 901
12. C. Clark, and E.L. Schmidt Uptake and utilization of amino acids by resting cells of Nitrosomonas europaea Journal of Bacteriology 93 1967 1309 1315
13. E.A. Davidson, J. Chorover, and D.B. Dail A mechanism of abiotic immobilization of nitrate in forest ecosystems: The ferrous wheel hypothesis Global Change Biology 9 2003 228 236
14. K.N. Duddleston, P.J. Bottomley, A. Porter, and D.J. Arp Effects of soil and water content on methyl bromide oxidation by the ammonia-oxidizing bacterium Nitrosomonas europaea Applied and Environmental Microbiology 66 2000 2636 2640
15. G.W. Gee, and J.W. Bauder Particle-size analysis A. Klute Methods of Soil Analysis Part 1 - Physical and Mineralogical Methods 1986 Soils Science Society of America Madison, Wisconsin 383 411
16. R.H. Hageman, and D.P. Hucklesby Nitrate reductase in higher plants Methods of Enzymology 23 1971 491 503
17. R.C. Hastings, M.T. Ceccherini, N. Miclaus, J.R. Saunders, M. Bazzicalupo, and A.J. McCarthy Direct molecular biological analysis of ammonia oxidising bacteria populations in cultivated soil plots treated with swine manure FEMS Microbiology Ecology 23 1997 45 54
18. N.G. Hommes, S.A. Russell, and P.J. Bottomley Effects of soil on ammonia, ethylene, chloroethane and 1,1,1-trichloroethane oxidation by Nitrosomonas europaea Applied and Environmental Microbiology 64 1998 1372 1378
19. N.G. Hommes, L.A. Sayavedra-Soto, and D.J. Arp Chemolithoorganotrophic growth of Nitrosomonas europaea on fructose Journal of Bacteriology 185 2003 6809 6814
20. A.B. Hooper, and K.R. Terry Specific inhibitors of ammonia oxidation in Nitrosomonas Journal of Bacteriology 115 1973 480 485
21. Q.Q. Jiang, and L.R. Bakken Comparison of Nitrosospira strains isolated from terrestrial environments FEMS Microbiology Ecology 30 1999 171 186
22. S. Khademi, J. O'Connell, J. Remis, Y. Robles-Colmenares, L.J.W. Miercke, and R. Stroud Mechanism of ammonia transport by Amt/MEP/Rh: structure of AmtB at 1.35 Å Science 305 2004 1587 1594
23. H.P. Koops, and A. Pommerening-Roser Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species FEMS Microbiology Ecology 37 2001 1 9
24. G.A. Kowalchuk, J.R. Stephen, W. DeBoer, J.I. Prosser, T.M. Embley, and J.W. Woldendorp Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments Applied and Environmental Microbiology 63 1997 1489 1497
25. K.J. McInnes, R.W. Weaver, and M.J. Savage Soil water potential R.W. Weaver Methods of Soil Analysis Part 2- Microbiological and Biochemical Properties 1994 Soil Science Society of America, Inc. Madison, WI 53 58
26. A.D. McLaren Radiation as a technique in soil biology and biochemistry Soil Biology and Biochemistry 1 1969 63 73
27. N.P. McNamara, H.I.J. Black, N.A. Beresford, and N.R. Parekh Effects of acute gamma irradiation on chemical, physical and biological properties of soils Applied Soil Ecology 24 2003 117 132
28. A.T. Mintie, R.S. Heichen, K. Cromack, D.D. Myrold, and P.J. Bottomley Ammonia-oxidizing bacteria along meadow-to-forest transects in the Oregon Cascade mountains Applied and Environmental Microbiology 69 2003 3129 3136
29. H. Nommik, and K. Vahtras Retention and fixation of ammonium and ammonia in soils F.J. Stevenson Nitrogen in agricultural soils 1982 American Society of Agronomy, Inc.,Crop Science Society of America, Inc., Soil Science Society of America, Inc. Madison, Wisconsin 123 222
30. J.M. Norton, J.J. Alzerreca, and Y. Suwa Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria Archives of Microbiology 177 2002 139 149
31. Y. Okano, K.R. Hristova, C.M. Leutenegger, L.E. Jackson, R.F. Denison, B. Gebreyesus, D. Lebauer, and K.M. Scow Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil Applied and Environmental Microbiology 70 2004 1008 1016
32. T. Oved, A. Shaviv, T. Goldrath, R.T. Mandelbaum, and D. Minz Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil Applied and Environmental Microbiology 67 2001 3426 3433
33. J.I. Prosser Autotrophic Nitrification in Bacteria Advances in Microbial Physiology 30 1989 127 171
34. U. Purkhold, A. Pommerening-Roser, S. Juretschko, M. Schmid, H.P. Koops, and M. Wagner Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implication for molecular diversity surveys Applied and Environmental Microbiology 66 2000 5368 5382
35. J.J. Rich, R.S. Heichen, P.J. Bottomley, K. Cromack Jr, and D.D. Myrold Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils Applied and Environmental Microbiology 69 2003 5974 5982
36. E.L. Schmidt, and L.W. Belser Autotrophic Nitrifying Bacteria R.W. Weaver Methods of Soil Analysis Part 2- Microbiological and Biochemical Properties 1994 Soil Science Society of America, Inc. Madison, WI 159 177
37. J.T. Sims Lime Requirement D.L. Sparks Methods of Soil Analysis Part 3- Chemical Methods 1996 Soil Science Society of America Inc. Madison, Wisconsin 491 515
38. P.J. Smethurst, A.M. Herbert, and L.M. Ballard Fertilization effects on soil chemistry in three eucalypt plantations Soil Science Society of America Journal 65 2001 795 804
39. J. Stark, and M.K. Firestone Kinetic characteristics of ammonium-oxidizer communities in a California oak woodland-annual grassland Soil Biology and Biochemistry 28 1996 1307 1317
40. G. Stehr, B. Bottcher, P. Dittberner, G. Rath, and H.P. Koops The ammonia-oxidizing nitrifying population of the River Elbe estuary FEMS Microbiology Ecology 17 1995 177 186
41. I. Suzuki, S.C. Kwok, and U. Dular Competitive inhibition of ammonia oxidizing system of Nitrosomonas europaea; general conditions and properties FEMS Letters 72 1976 117 120
42. P. Woomer Most probable number counts R.W. Weaver Methods of Soil Analysis Part 2- Microbiological and biochemical properties 1994 Soil Science Society of America, Inc Madison, Wis 59 79