Principal component analysis of fast-folding λ-repressor mutants

Chemical Physics Letters

Volumn 421, Issue 1-3, 2006, Pages 5-10

  Maisuradze, Gia G ^a   Leitner, David M ^a  

^a UNIVERSITY OF NEVADA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BROWNIAN MOVEMENT; COMPUTER SIMULATION; EIGENVALUES AND EIGENFUNCTIONS; PROTEINS;

COMPONENT ANALYSIS; ENERGY PROFILE; REPRESSOR MUTANTS;

MUTAGENESIS;

EID: 33644973661     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2006.01.044     Document Type: Article

References (35)

1. M. Gruebele Annu. Rev. Phys. Chem. 50 1999 485
2. J.K. Myers, and T.G. Oas Annu. Rev. Biochem. 71 2002 783
3. M. Gruebele Curr. Opin. Struct. Biol. 12 2002 161
4. W.Y. Yang, and M. Gruebele Nature 423 2003 193
5. W.Y. Yang, and M. Gruebele Biophys. J. 87 2004 596
6. M. Karplus, and J.A. McCammon Nat. Struct. Biol. 9 2002 646
7. C.L. Brooks III Accounts Chem. Res. 35 2002 447
8. S. Gnanakaran, H. Nymeyer, J.J. Portman, K.Y. Sanbonmatsu, and A.E. Garcia Curr. Opin. Struct. Biol. 13 2003 168
9. R.M. Levy, A.R. Srinivasan, W.K. Olson, and J.A. McCammon Biopolymers 23 1984 1099
10. A.E. Garcia Phys. Rev. Lett. 68 1992 2696
11. A.E. Garcia, and J.G. Harman Protein Sci. 5 1996 62
12. A. Amadi, A.B.M. Linssen, and H.J.C. Berendsen Proteins 17 1993 412
13. T. Ichiye, and M. Karplus Proteins 11 1991 205
14. S. Hayward, A. Kitao, F. Hirata, and N. Go J. Mol. Biol. 234 1993 1207
15. A.L. Tournier, and J.C. Smith Phys. Rev. Lett. 91 2003 208106
16. T.V. Pogorelov, and Z. Luthey-Schulten Biophys. J. 87 2004 207
17. K. Moritsugu, and A. Kidera J. Phys. Chem. B 108 2004 3890
18. L.J. Beamer, and C.O. Pabo J. Mol. Biol. 227 1992 177
19. A. Kitao, F. Hirata, and N. Go Chem. Phys. 158 1991 447
20. S. Hayward, A. Kitao, and H.J.C. Berendsen Proteins 27 1997 425
21. A. Kitao, S. Hayward, and N. Go Proteins 33 1998 496
22. A. Garcia, and G. Hummer Proteins 36 1999 175
23. B. Hess Phys. Rev. E 62 2000 8438
24. B. Hess Phys. Rev. E 65 2002 031910-1
25. A.B.M. Linssen, PhD Thesis, University of Groningen, The Netherlands, 1998. Available at: 〈http://www.ub.rug.nl/eldoc/dis/science/a.b.m. linssen〉.
26. E. Lindahl, B. Hess, and D. van der Spoel J. Mol. Model. 7 2001 306
27. W.F. van Gunsteren et al., Biomolecular Simulation: The (Gromos96) Manual and User Guide, Hochschuleverlag (AG) an der (ETH), Zurich, 1996.
28. H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, A. DiNola, and J.R. Haak J. Chem. Phys. 81 1984 3684
29. H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, and J. Hermans B. Pullman Intermolecular Forces 1981 Reidel Dordrecht, The Netherlands p. 331
30. T. Darden, T. York, and L. Pedersen J. Chem. Phys. 98 1993 10089
31. U. Essmann, L. Perera, M.L. Berkowitz, T. Darden, H. Lee, and L.G. Pedersen J. Chem. Phys. 103 1995 8577
32. J.B. Gao, Y. Cao, and J.-M. Lee Phys. Lett. A 314 2003 392
33. H. Yang Science 302 2003 262
34. J.J. Portman, S. Takada, and P.G. Wolynes Phys. Rev. Lett. 81 1998 5237
35. J.J. Portman, S. Takada, and P.G. Wolynes J. Chem. Phys. 114 2001 5069 5082