-
1
-
-
0020490340
-
Molecular cloning and sequencing of the gene for E. coli cAMP receptor protein
-
Aiba H, Fujimoto S, Ozaki N. 1982. Molecular cloning and sequencing of the gene for E. coli cAMP receptor protein. Nucleic Acids Res 10:1345-1362.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 1345-1362
-
-
Aiba, H.1
Fujimoto, S.2
Ozaki, N.3
-
4
-
-
0001031179
-
Proteins: A theoretical perspective of dynamics, structure, and thermodynamics
-
New York: Wiley
-
Brooks CL, Karplus M, Montgomery-Pettitt BM. 1988. Proteins: A theoretical perspective of dynamics, structure, and thermodynamics. In: Advances in chemical physics, vol LXXI. New York: Wiley.
-
(1988)
Advances in Chemical Physics
, vol.71
-
-
Brooks, C.L.1
Karplus, M.2
Montgomery-Pettitt, B.M.3
-
5
-
-
0028061282
-
Promoter structure, promoter recognition, and transcription activation in prokaryotes
-
Busby S, Ebright RH. 1994. Promoter structure, promoter recognition, and transcription activation in prokaryotes. Cell 79:743-746.
-
(1994)
Cell
, vol.79
, pp. 743-746
-
-
Busby, S.1
Ebright, R.H.2
-
6
-
-
0028912595
-
A sampling problem in molecular dynamics simulations of macromolecules
-
Clarage JB, Romo T, Andrews BK, Pettitt BM, Phillips GN. 1995. A sampling problem in molecular dynamics simulations of macromolecules. Proc Natl Acad Sci USA 92:3285-3292.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 3285-3292
-
-
Clarage, J.B.1
Romo, T.2
Andrews, B.K.3
Pettitt, B.M.4
Phillips, G.N.5
-
7
-
-
0020417679
-
Proton nuclear magnetic resonance study of the histidine residues of the Escherichia coli adenosine 3′,5′-phosphate receptor protein. pH titration behavior, deuterium exchange and partial assignments
-
Clore GM, Gronenborn AM. 1982. Proton nuclear magnetic resonance study of the histidine residues of the Escherichia coli adenosine 3′,5′-phosphate receptor protein. pH titration behavior, deuterium exchange and partial assignments. Biochemistry 21:4048-4053.
-
(1982)
Biochemistry
, vol.21
, pp. 4048-4053
-
-
Clore, G.M.1
Gronenborn, A.M.2
-
8
-
-
0020490341
-
Cloning and sequencing of the crp gene of Escherichia coli K12
-
Cossart P, Gicquel-Sanzey B. 1982. Cloning and sequencing of the crp gene of Escherichia coli K12. Nucleic Acids Res 10:1363-1378.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 1363-1378
-
-
Cossart, P.1
Gicquel-Sanzey, B.2
-
9
-
-
0027225271
-
Transcription activation at class I CAP-dependent promoters
-
Ebright RH. 1993. Transcription activation at class I CAP-dependent promoters. Mol Microbiol 8:797-802.
-
(1993)
Mol Microbiol
, vol.8
, pp. 797-802
-
-
Ebright, R.H.1
-
10
-
-
0026320866
-
The energy landscapes and motions in proteins
-
Frauenfelder H, Sligar SG, Wolynes PG. 1991. The energy landscapes and motions in proteins. Science 254:1598-1601.
-
(1991)
Science
, vol.254
, pp. 1598-1601
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
11
-
-
0000577041
-
Non-linear dynamics of proteins
-
García AE. 1992. Non-linear dynamics of proteins. Phys Rev Lett 68:2696-2699.
-
(1992)
Phys Rev Lett
, vol.68
, pp. 2696-2699
-
-
García, A.E.1
-
12
-
-
0011479901
-
Multi-basin dynamics of a protein in aqueous solution
-
Peyrard M, ed. Berlin: Les Editions de Physique, Springer
-
García AE. 1995. Multi-basin dynamics of a protein in aqueous solution. In: Peyrard M, ed. Nonlinear excitations in biomolecules. Berlin: Les Editions de Physique, Springer. pp 191-206.
-
(1995)
Nonlinear Excitations in Biomolecules
-
-
García, A.E.1
-
13
-
-
0028363352
-
Dynamics and relative stability of parallel- and antiparallel-stranded DNA duplexes
-
García AE. Soumpasis DM, Jovin TM. 1994. Dynamics and relative stability of parallel- and antiparallel-stranded DNA duplexes. Biophys J 66: 1742-1755.
-
(1994)
Biophys J
, vol.66
, pp. 1742-1755
-
-
García, A.E.1
Soumpasis, D.M.2
Jovin, T.M.3
-
14
-
-
0026651748
-
DNA sequence determinants for binding of the Escherichia coli catabolite gene activator protein
-
Gunasekera A, Ebright YW, Ebright RH. 1992. DNA sequence determinants for binding of the Escherichia coli catabolite gene activator protein. J Biol Chem 21:14713-14720.
-
(1992)
J Biol Chem
, vol.21
, pp. 14713-14720
-
-
Gunasekera, A.1
Ebright, Y.W.2
Ebright, R.H.3
-
15
-
-
0024462882
-
Escherichia coli cAMP receptor protein: Evidence for three protein conformational states with different promoter binding affinities
-
Heyduk T, Lee JC. 1989. Escherichia coli cAMP receptor protein: Evidence for three protein conformational states with different promoter binding affinities. Biochemistry 28:6914-6924.
-
(1989)
Biochemistry
, vol.28
, pp. 6914-6924
-
-
Heyduk, T.1
Lee, J.C.2
-
16
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, Chandrasekhar J, Madura JD. 1983. Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
-
17
-
-
33645941402
-
The OPLS potential functions for proteins. Energy minimizations for crystals of cyclic peptides and crambin
-
Jorgensen WL, Tirado-Rives J. 1988. The OPLS potential functions for proteins. Energy minimizations for crystals of cyclic peptides and crambin. J Am Chem Soc 110:1657-1666.
-
(1988)
J Am Chem Soc
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
18
-
-
0000127140
-
Method for estimating the configurational entropy of macromolecules
-
Karplus M, Kushick JN. 1981. Method for estimating the configurational entropy of macromolecules. Macromolecules 14:325-332.
-
(1981)
Macromolecules
, vol.14
, pp. 325-332
-
-
Karplus, M.1
Kushick, J.N.2
-
19
-
-
0027236999
-
Transcriptional control by cAMP and its receptor protein
-
Kolb A, Busby S, Buc H, Garges S, Adhya S. 1993. Transcriptional control by cAMP and its receptor protein. Annu Rev Biochem 62:749-795.
-
(1993)
Annu Rev Biochem
, vol.62
, pp. 749-795
-
-
Kolb, A.1
Busby, S.2
Buc, H.3
Garges, S.4
Adhya, S.5
-
20
-
-
0000910556
-
Molecular dynamics of macromolecules in water
-
Levitt M. 1989. Molecular dynamics of macromolecules in water. Chemica Scripta 29A:197-203.
-
(1989)
Chemica Scripta
, vol.29 A
, pp. 197-203
-
-
Levitt, M.1
-
21
-
-
0018350099
-
Least square fitting of two structures. Appendix in gene duplication in the structural evolution of chymotrypsin
-
McLachalan J. 1979. Least square fitting of two structures. Appendix in gene duplication in the structural evolution of chymotrypsin. J Mol Biol 128: 49-79.
-
(1979)
J Mol Biol
, vol.128
, pp. 49-79
-
-
McLachalan, J.1
-
22
-
-
0004300890
-
-
San Francisco: University of California
-
Pearlman DA, Case DA, Caldwell JC, Siebel GL, Singh UC, Weiner P, Kollman PA. 1991. AMBER 4.0. San Francisco: University of California.
-
(1991)
AMBER 4.0
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.C.3
Siebel, G.L.4
Singh, U.C.5
Weiner, P.6
Kollman, P.A.7
-
23
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90 degrees
-
Schultz SC, Shields GC, Steitz TA. 1991. Crystal structure of a CAP-DNA complex: The DNA is bent by 90 degrees. Science 253:1001-1007.
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
24
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar RS, Record MT. 1994. Coupling of local folding to site-specific binding of proteins to DNA. Science 263:777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record, M.T.2
-
25
-
-
84946450438
-
Algorithms for macromolecular dynamics and constraint dynamics
-
van Gunsteren WF, Berendsen HJC. 1977. Algorithms for macromolecular dynamics and constraint dynamics. Mol Phys 34:1111-641.
-
(1977)
Mol Phys
, vol.34
, pp. 1111-1641
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
26
-
-
0023661228
-
Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 Å resolution
-
Weber IT, Steitz TA. 1987. Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 Å resolution. J Mol Biol 198:311-326.
-
(1987)
J Mol Biol
, vol.198
, pp. 311-326
-
-
Weber, I.T.1
Steitz, T.A.2
-
27
-
-
0021757436
-
A new force field for molecular mechanical simulations of nucleic acids and proteins
-
Weiner SC, Kollman PA, Case DA, Singh UC, Ghio C, Alagona G, Profeta S, Wiener P. 1984. A new force field for molecular mechanical simulations of nucleic acids and proteins. J Am Chem Soc 106:765-784.
-
(1984)
J Am Chem Soc
, vol.106
, pp. 765-784
-
-
Weiner, S.C.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, C.5
Alagona, G.6
Profeta, S.7
Wiener, P.8
-
28
-
-
84988053694
-
An all atom force field for simulations of proteins and nucleic acids
-
Weiner SC, Kollman PA, Nguyen DT, Case DA. 1986. An all atom force field for simulations of proteins and nucleic acids. J Comput Chem 7: 230-252.
-
(1986)
J Comput Chem
, vol.7
, pp. 230-252
-
-
Weiner, S.C.1
Kollman, P.A.2
Nguyen, D.T.3
Case, D.A.4
-
29
-
-
0027161386
-
Identification of the activating region of catabolite gene activator protein (CAP): Isolation and characterization of mutants of CAP specifically defective in transcription activation
-
Zhou Y, Zhang X, Ebrigh RH. 1993. Identification of the activating region of catabolite gene activator protein (CAP): Isolation and characterization of mutants of CAP specifically defective in transcription activation. Proc Natl Acad Sci USA 90:6081-6085.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 6081-6085
-
-
Zhou, Y.1
Zhang, X.2
Ebrigh, R.H.3
|