-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI. Ludwig W. Schleifer KH. 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
0032769501
-
Culture-independent quantification of physiologically-active microbial groups in fermented foods using rRNA-targeted oligonucleotide probes: Application to pozol, a Mexican lactic acid fermented maize dough
-
Ampe F. ben Omar N. Guyot JP. 1999 Culture-independent quantification of physiologically-active microbial groups in fermented foods using rRNA-targeted oligonucleotide probes: application to pozol, a Mexican lactic acid fermented maize dough J Appl Microbiol 87 131 140
-
(1999)
J Appl Microbiol
, vol.87
, pp. 131-140
-
-
Ampe, F.1
Ben Omar, N.2
Guyot, J.P.3
-
4
-
-
0346024108
-
Effect of unlabeled helper probes on detection of an RNA target by bead-based sandwich hybridization
-
Barken KB. Gabig-Ciminska M. Holmgren A. Molin S. 2004 Effect of unlabeled helper probes on detection of an RNA target by bead-based sandwich hybridization Biotechniques 36 124 132
-
(2004)
Biotechniques
, vol.36
, pp. 124-132
-
-
Barken, K.B.1
Gabig-Ciminska, M.2
Holmgren, A.3
Molin, S.4
-
5
-
-
0037388225
-
Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity
-
Crosby LD. Criddle CS. 2003 Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity Biotechniques 34 790 798
-
(2003)
Biotechniques
, vol.34
, pp. 790-798
-
-
Crosby, L.D.1
Criddle, C.S.2
-
6
-
-
0032189023
-
Microbial diversity in a hydrocarbon- and chlorinated-solvent- contaminated aquifer undergoing intrinsic bioremediation
-
Dojka MA. Hugenholtz P. Haack SK. Pace NR. 1998 Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation Appl Environ Microbiol 64 3869 3877
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3869-3877
-
-
Dojka, M.A.1
Hugenholtz, P.2
Haack, S.K.3
Pace, N.R.4
-
7
-
-
0031692488
-
Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
-
Franks AH. Harmsen HJ. Raangs GC. Jansen GJ. Schut F. Welling GW. 1998 Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes Appl Environ Microbiol 64 3336 3345
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3336-3345
-
-
Franks, A.H.1
Harmsen, H.J.2
Raangs, G.C.3
Jansen, G.J.4
Schut, F.5
Welling, G.W.6
-
9
-
-
0033855457
-
Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
-
Fuchs BM. Glockner FO. Wulf J. Amann R. 2000 Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes Appl Environ Microbiol 66 3603 3607
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3603-3607
-
-
Fuchs, B.M.1
Glockner, F.O.2
Wulf, J.3
Amann, R.4
-
10
-
-
0033966699
-
Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria
-
Harmsen HJ. Gibson GR. Elfferich P. Raangs GC. Wildeboer-Veloo AC. Argaiz A. et al. 2000 Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria FEMS Microbiol Lett 183 125 129
-
(2000)
FEMS Microbiol Lett
, vol.183
, pp. 125-129
-
-
Harmsen, H.J.1
Gibson, G.R.2
Elfferich, P.3
Raangs, G.C.4
Wildeboer-Veloo, A.C.5
Argaiz, A.6
-
12
-
-
0026762659
-
Dual staining of natural bacterioplankton with 4′,6-diamidino-2- phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S rRNA sequences
-
Hicks RE. Amann RI. Stahl DA. 1992 Dual staining of natural bacterioplankton with 4′,6-diamidino-2-phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S rRNA sequences Appl Environ Microbiol 58 2158 2163
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 2158-2163
-
-
Hicks, R.E.1
Amann, R.I.2
Stahl, D.A.3
-
13
-
-
0033789099
-
Evaluation of 16S rRNA and cellular fatty acid profiles as markers of human intestinal bacterial growth in the chemostat
-
Hopkins MJ. Macfarlane GT. 2000 Evaluation of 16S rRNA and cellular fatty acid profiles as markers of human intestinal bacterial growth in the chemostat J Appl Bacteriol 89 668 677
-
(2000)
J Appl Bacteriol
, vol.89
, pp. 668-677
-
-
Hopkins, M.J.1
MacFarlane, G.T.2
-
16
-
-
0029162158
-
Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples
-
Langendijk PS. Schut F. Jansen GJ. Raangs GC. Kamphuis GR. Wilkinson MH. Welling GW. 1995 Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples Appl Environ Microbiol 61 3069 3075
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3069-3075
-
-
Langendijk, P.S.1
Schut, F.2
Jansen, G.J.3
Raangs, G.C.4
Kamphuis, G.R.5
Wilkinson, M.H.6
Welling, G.W.7
-
17
-
-
0031030477
-
Phylogeny of mercury resistance (mer) operons of gram-negative bacteria isolated from the fecal flora of primates
-
Liebert CA. Wireman J. Smith T. Summers AO. 1997 Phylogeny of mercury resistance (mer) operons of gram-negative bacteria isolated from the fecal flora of primates Appl Environ Microbiol 63 1066 1076
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1066-1076
-
-
Liebert, C.A.1
Wireman, J.2
Smith, T.3
Summers, A.O.4
-
18
-
-
0035210154
-
Optimization of an oligonucleotide microchip for microbial identification studies: A non-equilibrium dissociation approach
-
Liu WT. Mirzabekov AD. Stahl DA. 2001 Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach Environ Microbiol 3 619 629
-
(2001)
Environ Microbiol
, vol.3
, pp. 619-629
-
-
Liu, W.T.1
Mirzabekov, A.D.2
Stahl, D.A.3
-
19
-
-
4043064897
-
Multiplexed, particle-based detection of DNA using flow cytometry with 3DNA dendrimers for signal amplification
-
Lowe M. Spiro A. Zhang YZ. Getts R. 2004a Multiplexed, particle-based detection of DNA using flow cytometry with 3DNA dendrimers for signal amplification Cytometry 60A 135 144
-
(2004)
Cytometry
, vol.60
, pp. 135-144
-
-
Lowe, M.1
Spiro, A.2
Zhang, Y.Z.3
Getts, R.4
-
21
-
-
0029911557
-
Molecular analysis of the composition of the bifidobacterial and Lactobacillus microflora of humans
-
McCartney AL. Wenzhi W. Tannock GW. 1996 Molecular analysis of the composition of the bifidobacterial and Lactobacillus microflora of humans Appl Environ Microbiol 62 4608 4613
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 4608-4613
-
-
McCartney, A.L.1
Wenzhi, W.2
Tannock, G.W.3
-
22
-
-
9344247522
-
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment
-
Manz W. Amann R. Ludwig W. Vancanneyt M. Schleifer KH. 1996 Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment Microbiology 142 1097 1106
-
(1996)
Microbiology
, vol.142
, pp. 1097-1106
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Vancanneyt, M.4
Schleifer, K.H.5
-
23
-
-
0030869929
-
Detection of enterococci with rRNA targeted DNA probes and their use for hygienic drinking water control
-
Meier H. Koob C. Ludwig W. Amann R. Frahm E. Hoffmann S. et al. 1997 Detection of enterococci with rRNA targeted DNA probes and their use for hygienic drinking water control Water Sci Tech 35 437 444
-
(1997)
Water Sci Tech
, vol.35
, pp. 437-444
-
-
Meier, H.1
Koob, C.2
Ludwig, W.3
Amann, R.4
Frahm, E.5
Hoffmann, S.6
-
25
-
-
2342449125
-
Gram positive bacteria, a major reservoir of Class 1 antibiotic resistance integrons in poultry litter
-
Nandi S. Maurer JJ. Hofacre C. Summers AO. 2004 Gram positive bacteria, a major reservoir of Class 1 antibiotic resistance integrons in poultry litter Proc Natl Acad Sci USA 101 7118 7122
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 7118-7122
-
-
Nandi, S.1
Maurer, J.J.2
Hofacre, C.3
Summers, A.O.4
-
26
-
-
1142279554
-
Genetic diversity and virulence gene determinants of antibiotic-resistant Salmonella isolated from preharvest turkey production sources
-
Nayak R. Stewart T. Wang RF. Lin J. Cerniglia CE. Kenney PB. 2004 Genetic diversity and virulence gene determinants of antibiotic-resistant Salmonella isolated from preharvest turkey production sources Int J Food Microbiol 91 51 62
-
(2004)
Int J Food Microbiol
, vol.91
, pp. 51-62
-
-
Nayak, R.1
Stewart, T.2
Wang, R.F.3
Lin, J.4
Cerniglia, C.E.5
Kenney, P.B.6
-
27
-
-
0002437481
-
Chemical composition of Escherichia coli
-
. In. American Society for Microbiology Press Washington, DC, USA .
-
Neidhardt FC. Umbarger HE. 1996 Chemical composition of Escherichia coli. In Escherichia coli and Salmonella Cellular, Molecular Biology Neidhardt FC. Curtiss R. III. Ingraham JL. Lin ECC. Low KB. Magasanik B. et al. (eds) Washington, DC, USA American Society for Microbiology Press, pp. 13 16.
-
(1996)
Escherichia Coli and Salmonella Cellular, Molecular Biology* Neidhardt F.C.*Curtiss III. R.*Ingraham J.L.*Lin ECC.*Low K.B.*Magasanik B. et Al. (Eds) , Pp.
, pp. 13-16
-
-
Neidhardt, F.C.1
Umbarger, H.E.2
-
28
-
-
2942624056
-
Quantification of intestinal bacterial populations by real-time PCR with a universal primer set and minor groove binder probes: A global approach to the enteric flora
-
Ott SJ. Musfeldt M. Ullmann U. Hampe J. Schreiber S. 2004 Quantification of intestinal bacterial populations by real-time PCR with a universal primer set and minor groove binder probes: a global approach to the enteric flora J Clin Microbiol 42 2566 2572
-
(2004)
J Clin Microbiol
, vol.42
, pp. 2566-2572
-
-
Ott, S.J.1
Musfeldt, M.2
Ullmann, U.3
Hampe, J.4
Schreiber, S.5
-
29
-
-
0013950560
-
Estimation of a correlation coefficient from an uncertainty measure
-
Pearson WH. 1966 Estimation of a correlation coefficient from an uncertainty measure Psychometrika 31 421 433
-
(1966)
Psychometrika
, vol.31
, pp. 421-433
-
-
Pearson, W.H.1
-
30
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz MF. Cavanaugh CM. 1998 Bias in template-to-product ratios in multitemplate PCR Appl Environ Microbiol 64 3724 3730
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
31
-
-
0034017583
-
Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization
-
Sghir A. Gramet G. Suau A. Rochet V. Pochart P. Dore J. 2000 Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization Appl Environ Microbiol 66 2263 2266
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2263-2266
-
-
Sghir, A.1
Gramet, G.2
Suau, A.3
Rochet, V.4
Pochart, P.5
Dore, J.6
-
33
-
-
0035071886
-
Rapid detection, identification, and enumeration of Escherichia coli by fluorescence in situ hybridization using an array scanner
-
Stender H. Oliveira K. Rigby S. Bargoot F. Coull J. 2001 Rapid detection, identification, and enumeration of Escherichia coli by fluorescence in situ hybridization using an array scanner J Microbiol Methods 45 31 39
-
(2001)
J Microbiol Methods
, vol.45
, pp. 31-39
-
-
Stender, H.1
Oliveira, K.2
Rigby, S.3
Bargoot, F.4
Coull, J.5
-
34
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau AR. Bonnet M. Sutren J. Godon GR. Gibson MD. Collins J. Dore 1999 Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut Appl Environ Microbiol 65 4799 4807
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4799-4807
-
-
Suau, A.R.1
Bonnet, M.2
Sutren, J.3
Godon, G.R.4
Gibson, M.D.5
Dore, C.J.6
-
35
-
-
0027474740
-
Mercury released from dental 'silver' fillings provokes an increase in mercury- and antibiotic-resistant bacteria in oral and intestinal floras of primates
-
Summers AO. Wireman J. Vimy MJ. Lorscheider FL. Marshall B. Levy SB. et al. 1993 Mercury released from dental 'silver' fillings provokes an increase in mercury- and antibiotic-resistant bacteria in oral and intestinal floras of primates Antimicrob Agents Chemother 37 825 834
-
(1993)
Antimicrob Agents Chemother
, vol.37
, pp. 825-834
-
-
Summers, A.O.1
Wireman, J.2
Vimy, M.J.3
Lorscheider, F.L.4
Marshall, B.5
Levy, S.B.6
-
36
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki MT. Giovannoni SJ. 1996 Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR Appl Environ Microbiol 62 625 630
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
37
-
-
0031790538
-
Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
-
Suzuki M. Rappe MS. Giovannoni SJ. 1998 Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity Appl Environ Microbiol 64 4522 4529
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4522-4529
-
-
Suzuki, M.1
Rappe, M.S.2
Giovannoni, S.J.3
-
38
-
-
0033760479
-
Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays
-
Suzuki MT. Taylor LT. DeLong EF. 2000 Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays Appl Environ Microbiol 66 4605 4614
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4605-4614
-
-
Suzuki, M.T.1
Taylor, L.T.2
Delong, E.F.3
-
40
-
-
0029881547
-
PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
-
Wang RF. Cao WW. Cerniglia CE. 1996a PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples Appl Environ Microbiol 62 1242 1247
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1242-1247
-
-
Wang, R.F.1
Cao, W.W.2
Cerniglia, C.E.3
-
41
-
-
0029881547
-
PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
-
Wang RF. Cao WW. Cerniglia CE. 1996b PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples Appl Environ Microbiol 62 1242 1247
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1242-1247
-
-
Wang, R.F.1
Cao, W.W.2
Cerniglia, C.E.3
-
42
-
-
0037031130
-
Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples
-
Wang RF. Beggs ML. Robertson LH. Cerniglia CE. 2002 Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples FEMS Microbiol Lett 213 175 182
-
(2002)
FEMS Microbiol Lett
, vol.213
, pp. 175-182
-
-
Wang, R.F.1
Beggs, M.L.2
Robertson, L.H.3
Cerniglia, C.E.4
-
43
-
-
0029900986
-
Human colonic biota studied by ribosomal DNA sequence analysis
-
Wilson KH. Blitchington RB. 1996 Human colonic biota studied by ribosomal DNA sequence analysis Appl Environ Microbiol 62 2273 2278
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2273-2278
-
-
Wilson, K.H.1
Blitchington, R.B.2
-
44
-
-
0028208889
-
Measurement of total mercury in biological specimens by cold vapor atomic fluoresence spectrometry
-
Winfield SA. Boyd ND. Vimy MJ. Lorscheider FL. 1994 Measurement of total mercury in biological specimens by cold vapor atomic fluoresence spectrometry Clin Chem 40 206 210
-
(1994)
Clin Chem
, vol.40
, pp. 206-210
-
-
Winfield, S.A.1
Boyd, N.D.2
Vimy, M.J.3
Lorscheider, F.L.4
-
45
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
von Wintzingerode F. Gobel UB. Stackebrandt E. 1997 Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis FEMS Microbiol Rev 21 213 229
-
(1997)
FEMS Microbiol Rev
, vol.21
, pp. 213-229
-
-
Von Wintzingerode, F.1
Gobel, U.B.2
Stackebrandt, E.3
-
46
-
-
0030661561
-
Association of mercury resistance with antibiotic resistance in the gram-negative fecal bacteria of primates
-
Wireman J. Liebert CA. Smith T. Summers AO. 1997 Association of mercury resistance with antibiotic resistance in the gram-negative fecal bacteria of primates Appl Environ Microbiol 63 4494 4503
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4494-4503
-
-
Wireman, J.1
Liebert, C.A.2
Smith, T.3
Summers, A.O.4
|