Sequence analysis and initial characterization of two isozymes of hydroxylaminobenzene mutase from pseudomonas Pseudoalcaligenes JS45

Applied and Environmental Microbiology

Volumn 66, Issue 7, 2000, Pages 2965-2971

  Davis, John K ^a,b   Paoli, George C ^a   He, Zhongqi ^a,c   Nadeau, Lloyd J ^a   Somerville, Charles C ^a,d   Spain, Jim C ^a  

^a AIR FORCE RESEARCH LABORATORY   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c UNIVERSITY OF MAINE   (United States)

^d MARSHALL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; EVOLUTION; GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; PSEUDOMONAS PSEUDOALCALIGENES; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; GENE DELETION; GENES, BACTERIAL; HYDROXYLAMINES; INTRAMOLECULAR TRANSFERASES; ISOENZYMES; MOLECULAR SEQUENCE DATA; PSEUDOMONAS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS; NEGIBACTERIA; PROKARYOTA; PSEUDOMONAS; PSEUDOMONAS PSEUDOALCALIGENES;

EID: 0033880003     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.66.7.2965-2971.2000     Document Type: Article

References (42)

1. Aoki, K., S. Takenaka, S. Murakami, and R. Shinke. 1997. Partial purification and characterization of a bacterial dioxygenase that catalyzes the ring fission of 2-aminophenol. Microbiol. Res. 152:33-38.
2. Bamberger, E. 1894. Uber das Phenylhydroxylamin. Chem. Ber. 27:1548-1557.
3. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
4. Cnubben, N. H. P., B. Blaauboer, S. Juyn, J. Vervoort, and I. M. C. Rietjens. 1994. A spectrophotometric assay for the detection of 2-aminophenols in biological samples. Anal. Biochem. 220:165-171.
5. Cole, S. T., R. Brosch, J. Parkhill, T. Garnier, C. Churcher, D. Harris, S. V. Gordon, K. Eiglmeier, S. Gas, C. E. Barry III, F. Tekaia, K. Badcock, D. Basham, D. Brown, T. Chillingworth, R. Connor, R. Davies, K. Devlin, T. Feltwell, S. Gentles, N. Hamlin, S. Holroyd, T. Hornsby, K. Jagels, A. Krogh, J. McLean, S. Moule, L. Murphy, S. Oliver, J. Osborne, M. A. Quail, M. A. Rajandream, J. Rogers, S. Rutter, K. Seeger, S. Skelton, S. Squares, R. Sqares, J. E. Sulston, K. Taylor, S. Whitehead, and B. G. Barrell. 1998. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393:537-544.
6. Corbett, M. D., and B. R. Corbett. 1981. Metabolism of 4-chloronitrobenzene by the yeast Rhodospondium sp. Appl. Environ. Microbiol. 41:942-949.
7. Corbett, M. D., B. R. Corbett, and D. R. Doerge. 1982. Hydroxamic acid production and active-site induced Bamberger rearrangement from the action of α-ketoglutarate dehydrogenase on 4-chloronitrosobenzene. J. Chem. Soc. Perkin Trans. I 1982:345-350.
8. Davis, J. K., Z. He, C. C. Somerville, and J. C. Spain. 1999. Genetic and biochemical comparison of 2-aminophenol 1,6-dioxygenase of Pseudomonas pseudoalcaligenes JS45 to meta-cleavage dioxygenases: divergent evolution of 2-aminophenol meta-cleavage pathway. Arch. Microbiol. 172:330-339.
9. Dennis, J. J., and G. J. Zylstra. 1998. Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes. Appl. Environ. Microbiol. 64:2710-2715.
10. Edwards, D. I. 1993. Nitroimidazole drugs - action and resistance mechanisms. I. Mechanisms of action. J. Antimicrob. Chemother. 31:9-20.
11. Grimberg, J., S. Magiure, and L. Belluscio. 1989. A simple method for the preparation of plasmid and chromosomal E. coli DNA. Nucleic Acids Res. 17:8893.
12. Grinsted, J., and P. M. Bennett. 1988. Preparation and electrophoresis of plasmid DNA, p. 129-153. In J. Grinsted and P. M. Bennett (ed.), Plasmid technology. Academic Press, New York, N.Y.
13. Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580.
14. Harwood, C. S., and R. E. Parales. 1996. The β-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
15. He, Z., J. K. Davis, and J. C. Spain. 1998. Purification, characterization and sequence analysis of 2-aminomuconic 6-semialdehyde dehydrogenase from Pseudomonas iseudoalcaligenes JS45. J. Bacteriol. 180:4591-4595.
16. He, Z., and J. C. Spain. 1998. A novel 2-aminomuconate deaminase in the nitrobenzene degradation pathway of Pseudomonas pseudoalcaligenes JS45. J. Bacteriol. 180:2502-2506.
17. He, Z., and J. C. Spain. 1997. Studies of the catabolic pathway of degradation of nitrobenzene by Pseudomonas pseudoalcaligenes JS45: removal of the amino group from 2-aminomuconic semialdehyde. Appl. Environ. Microbiol. 63:4839-4843.
18. Herrmann, H., D. Janke, S. Krejsa, and I. Knuze. 1987. Involvement of the plasmid pPGH1 in the phenol degradation of Pseudomanas putida strain H. FEMS Microbiol. Lett. 43:133-137.
19. Kedderis, G. L., L. S. Argenbright, and G. T. Miwa. 1988. Mechanism of reductive activation of a 5-nitroimidazole by flavoproteins: model studies with dithionite. Arch. Biochem. Biophys. 262:40-48.
20. Kyte, J., and R. F. Doolittle. 1982. A simple method for displaying the hydrophobic character of a protein. J. Mol. Biol. 157:105-132.
21. Lauf, U., C. Muller, and C. Herrmann. 1998. The transposable elements resident on the plasmids of Pseudumonas putida strain H, Tn5501 and Tn5502, are cryptic transposons of the Tn3 family. Mol. Gen. Genet. 259: 674-678.
22. Lendenmann, U., and J. C. Spain. 1996. 2-Aminophenol 1,6-dioxygenase: a novel aromatic ring cleavage enzyme purified from Pseudomonas pseudoalcaligenes JS45. J. Bacteriol. 178:6227-6232.
23. Mars, A. E., J. Kingma, S. R. Kaschabek, W. Reineke, and D. B. Janssen. 1999. Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putilla GJ31. J. Bacteriol. 181:1309-1318.
24. Maskos, Z., and G. W. Winston. 1993. Alcohol dehydrogenase dependent reduction of 2-nitrosofluorene and rearrangement of N-hydroxy-2-amino-fluorene. Biochemistry 32:12768-12773.
25. Messing, J. 1983. New M13 vectors for cloning. Methods Enzymol. 101: 20-78.
26. Nishino, S. F., and J. C. Spain. 1993. Degradation of nitrobenzene by a Pseudomonas pseudoalcaligenes. Appl. Environ. Microbiol. 59:2520-2525.
27. Palleroni, N. J. 1984. Pseudomonadaceae, p. 140-218. In N. R. Krieg and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. I. Williams and Wilkins, Baltimore, Md.
28. Park, H. S., and H. S. Kim. 2000. Identification and characterization of the nitrobenzene catabolic plasmids pNB1 and pNB2 in Pseudomonas putida HS12. J. Bacteriol. 182:573-580.
29. Park, H. S., S. J. Lim, Y. K. Chang, A. G. Livingston, and H. S. Kim. 1999. Degradation of chloronitrobenzenes by a coculture of Pseudomonas putida and a Rhodococcus sp. Appl. Environ. Microbiol. 65:1083-1091.
30. Penfold, R. J., and J. M. Pemberton. 1992. An improved suicide vector for construction of chromosomal insertion mutations in bacteria. Gene 118: 145-146.
31. Romantschuk, M., G. Y. Richter, P. Mukhopadhyay, and D. Mills. 1991. IS801, an insertion sequence element isolated from Pseudomonas syringae pathovar phaseolicola. Mol. Microbiol. 5:617-622.
32. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
33. Schenzle, A., H. Lenke, P. Fischer, P. A. Williams, and H.-J. Knackmuss. 1997. Catabolism of 3-nitrophenol by Ralstonia eutropha JMP134. Appl. Environ. Microbiol. 63:1421-1427.
34. Schenzle, A., H. Lenke, J. C. Spain, and H.-J. Knackmuss. 1999. 3-Hydroxylaminophenol mutase from Ralstomia eutropha JMP134 catalyzes a Bamberger rearrangement. J. Bacteriol. 181:1444-1450.
35. Somerville, C. C., S. F. Nishimi, and J. C. Spain. 1995. Purification and characterization of nitrobenzene nitroreductase from Pseudomonas pseudoalcaligenes JS45. J. Bacteriol. 177:3837-3842.
36. Spain, J. C. 1995. Bacterial degradation of nitroaromatic comounds under aerobic conditions, p. 19-35. In J. C. Spain (ed.), Biodegradation of nitroaromatic compounds, vol. 49. Plenum Press. New York, N.Y.
37. Spain, J. C. 1995. Biodegradation of nitroaromatic compounds. Annu. Rev. Microbiol. 49:523-555.
38. Speiss, T., F. Desiere, P. Fischer, J. C. Spain, H.-J. Knackmuss, and H. Lenke. 1998. A new 4-nitrotoluene degradation pathway in a Mycobacterium strain. Appl. Environ. Microbiol. 64:446-452.
39. Sternson, L. A., and R. E. Gammans. 1975. A mechanistic study of aromatic hydroxylamine rearrangement in the rat. Bioorg. Chem. 4:58-63.
40. Takenaka, S., S. Murukami, R. Shinke, K. Hatakeyama, H. Yukawa, and K. Aoki. 1997. Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme. J. Biol. Chem. 272:14727-14732.
41. Takenaka, S., S. Murukami, R. Shinke, and K. Aoki. 1997. Metabolism of 2-aminophenol by Pseudomonas sp. AP-3: modified meta-cleavage pathway. Arch. Microbiol. 170:132-137.
42. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.