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Volumn 14, Issue 2, 2006, Pages 203-211

Histone H3 acetylated at lysine 9 in promoter is associated with low nucleosome density in the vicinity of transcription start site in human cell

Author keywords

Chromatin; Histone acetylation; Nucleosome; Transcriptional activity

Indexed keywords

HISTONE H3; LYSINE 9; PROTEIN; UNCLASSIFIED DRUG;

EID: 33644943043     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-006-1036-7     Document Type: Article
Times cited : (79)

References (20)
  • 1
    • 19944430797 scopus 로고    scopus 로고
    • Genomic maps and comparative analysis of histone modifications in human and mouse
    • Bernstein BE, Kamal M, Lindblad-Toh K et al. (2005) Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120: 169-181.
    • (2005) Cell , vol.120 , pp. 169-181
    • Bernstein, B.E.1    Kamal, M.2    Lindblad-Toh, K.3
  • 3
    • 10744226888 scopus 로고    scopus 로고
    • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
    • Cawley S, Bekiranov S, Ng HH et al. (2004) Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 116: 499-509.
    • (2004) Cell , vol.116 , pp. 499-509
    • Cawley, S.1    Bekiranov, S.2    Ng, H.H.3
  • 4
    • 21044431735 scopus 로고    scopus 로고
    • Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
    • Cheng J, Kapranov P, Drenkow J et al. (2005) Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308: 1149-1154.
    • (2005) Science , vol.308 , pp. 1149-1154
    • Cheng, J.1    Kapranov, P.2    Drenkow, J.3
  • 5
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • Florea L, Hartzell G, Zhang Z et al. (1999) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 8: 967-974.
    • (1999) Genome Res , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3
  • 6
    • 4444258534 scopus 로고    scopus 로고
    • Chromatin architecture of the human genome: Gene-rich domains are enriched in open chromatin fibers
    • Gilbert N, Boyle S, Fiegler H et al. (2004) Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers. Cell 118: 555-566.
    • (2004) Cell , vol.118 , pp. 555-566
    • Gilbert, N.1    Boyle, S.2    Fiegler, H.3
  • 7
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T, Allis CD (2001) Translating the histone code. Science 293: 1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 8
    • 12144287461 scopus 로고    scopus 로고
    • Novel RNAs identified an in-depth analysis of the transcriptome of human chromosomes 21 and 22
    • Kampa D, Cheng J, Kapranov P et al. (2004) Novel RNAs identified an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Res 14: 331-342.
    • (2004) Genome Res , vol.14 , pp. 331-342
    • Kampa, D.1    Cheng, J.2    Kapranov, P.3
  • 9
    • 0037012881 scopus 로고    scopus 로고
    • Large-scale transcriptional activity in chromosomes 21 and 22
    • Kapranov P, Cawley SE, Drenkow J et al. (2002) Large-scale transcriptional activity in chromosomes 21 and 22. Science 296: 916-919.
    • (2002) Science , vol.296 , pp. 916-919
    • Kapranov, P.1    Cawley, S.E.2    Drenkow, J.3
  • 10
    • 0036226603 scopus 로고    scopus 로고
    • BLAT: The BLAST-like alignment tool
    • Kent W (2002) BLAT: the BLAST-like alignment tool. Genome Res 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.1
  • 11
    • 3543023310 scopus 로고    scopus 로고
    • Evidence for nucleosome depletion at active regulatory regions genome-wide
    • Lee C-K, Shibata Y, Rao B et al. (2004) Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 36: 900-905.
    • (2004) Nat Genet , vol.36 , pp. 900-905
    • Lee, C.-K.1    Shibata, Y.2    Rao, B.3
  • 12
    • 1842533526 scopus 로고    scopus 로고
    • Activating and silencing histone modifications form independent allelic switch regions in the imprinted Gnas gene
    • Li T, Vu TH, Ulaner GA et al. (2004) Activating and silencing histone modifications form independent allelic switch regions in the imprinted Gnas gene. Hum Mol Genet 13: 741-750.
    • (2004) Hum Mol Genet , vol.13 , pp. 741-750
    • Li, T.1    Vu, T.H.2    Ulaner, G.A.3
  • 13
    • 2442454683 scopus 로고    scopus 로고
    • Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome
    • Liang G, Lin JCY, Wei V et al. (2004) Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome. Proc Natl Acad Sci USA 101: 7357-7362.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7357-7362
    • Liang, G.1    Lin, J.C.Y.2    Wei, V.3
  • 14
    • 26444508841 scopus 로고    scopus 로고
    • Single-nucleosome mapping of histone modifications in S. cerevisiae
    • Liu CL, Kaplan T, Kim M et al. (2005) Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol 3: e328.
    • (2005) PLoS Biol , vol.3
    • Liu, C.L.1    Kaplan, T.2    Kim, M.3
  • 15
    • 0024431684 scopus 로고
    • In vivo footprinting of a muscle specific enhancer by ligation-mediated PCR
    • Mueller PR, Wold B (1989) In vivo footprinting of a muscle specific enhancer by ligation-mediated PCR. Science 246: 780-786.
    • (1989) Science , vol.246 , pp. 780-786
    • Mueller, P.R.1    Wold, B.2
  • 16
    • 0034704248 scopus 로고    scopus 로고
    • Genome-wide location and function of DNA binding proteins
    • Ren B, Robert F, Wyrick JJ et al. (2000) Genome-wide location and function of DNA binding proteins. Science 290: 2306-2309.
    • (2000) Science , vol.290 , pp. 2306-2309
    • Ren, B.1    Robert, F.2    Wyrick, J.J.3
  • 17
    • 0035370439 scopus 로고    scopus 로고
    • Histone methylation versus histone acetylation: New insights into epigenetic regulation
    • Rice JC, Allis CD (2001) Histone methylation versus histone acetylation: new insights into epigenetic regulation. Curr Opin Cell Biol 13: 263-273.
    • (2001) Curr Opin Cell Biol , vol.13 , pp. 263-273
    • Rice, J.C.1    Allis, C.D.2
  • 18
    • 14644406272 scopus 로고    scopus 로고
    • Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
    • Roh T-Y, Cuddapah S, Zhao K (2005) Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev 19: 542-552.
    • (2005) Genes Dev , vol.19 , pp. 542-552
    • Roh, T.-Y.1    Cuddapah, S.2    Zhao, K.3
  • 19
    • 20444403749 scopus 로고    scopus 로고
    • Intrinsic histone-DNA interaction and low nucleosome density are important for preferential accessibility of promoter regions in yeast
    • Sekinger EA, Moqtaderi Z, Struhl K (2005) Intrinsic histone-DNA interaction and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell 18: 735-748.
    • (2005) Mol Cell , vol.18 , pp. 735-748
    • Sekinger, E.A.1    Moqtaderi, Z.2    Struhl, K.3
  • 20
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403: 41-45.
    • (2000) Nature , vol.403 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.