메뉴 건너뛰기




Volumn 4, Issue , 2004, Pages

Chloroplast DNA rearrangements in Campanulaceae: Phylogenetic utility of highly rearranged genomes

Author keywords

[No Author keywords available]

Indexed keywords

CAMPANULACEAE; CODONOPSIS; CYANANTHUS; LEPUS; MAGNOLIOPHYTA; PLATYCODON; TRACHEOPHYTA;

EID: 5444264964     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-4-27     Document Type: Article
Times cited : (165)

References (65)
  • 1
    • 5444234133 scopus 로고
    • Campanulaceae
    • Edited by: Heywood VH. New York: Mayflower Books
    • Kovanda M: Campanulaceae. In Flowering Plants of the World Edited by: Heywood VH. New York: Mayflower Books; 1978:254-256.
    • (1978) Flowering Plants of the World , pp. 254-256
    • Kovanda, M.1
  • 4
    • 0346971232 scopus 로고
    • System of the Campanulaceae family from the old world
    • Kolakovsky AA: System of the Campanulaceae family from the old world. Bot Zhurnal 1987, 72:1572-1579.
    • (1987) Bot Zhurnal , vol.72 , pp. 1572-1579
    • Kolakovsky, A.A.1
  • 5
    • 0009634301 scopus 로고
    • Campanulaceae
    • Edited by: Shishkin BK. Moskva-Leningrad: Akademia Nauk SSSR
    • Fedorov AA: Campanulaceae. In Flora of the U.S.S.R Edited by: Shishkin BK. Moskva-Leningrad: Akademia Nauk SSSR; 1972:92-324.
    • (1972) Flora of the U.S.S.R. , pp. 92-324
    • Fedorov, A.A.1
  • 6
    • 5444272876 scopus 로고
    • Platycodoneae, a new tribe in Campanulaceae
    • Yeo PF: Platycodoneae, a new tribe in Campanulaceae. Taxon 1993, 42:109.
    • (1993) Taxon , vol.42 , pp. 109
    • Yeo, P.F.1
  • 7
    • 0012494049 scopus 로고
    • Cytotaxonomic studies in the genus Campanula
    • Gadella TWJ: Cytotaxonomic studies in the genus Campanula. Wentia 1964, 11:1-104.
    • (1964) Wentia , vol.11 , pp. 1-104
    • Gadella, T.W.J.1
  • 8
    • 0001943441 scopus 로고
    • The genus Wahlenbergia s. lat. (Campanulaceae) in tropical Africa and Madagascar
    • Thulin M: The genus Wahlenbergia s. lat. (Campanulaceae) in tropical Africa and Madagascar. Symb Bot Upsal 1975, 21:1-223.
    • (1975) Symb Bot Upsal , vol.21 , pp. 1-223
    • Thulin, M.1
  • 12
    • 0028005619 scopus 로고
    • Chloroplast DNA systematics: A review of methods and data analysis
    • Olmstead RG, Palmer JD: Chloroplast DNA systematics: a review of methods and data analysis. Amer J Bot 1994, 81:1205-1224.
    • (1994) Amer J Bot , vol.81 , pp. 1205-1224
    • Olmstead, R.G.1    Palmer, J.D.2
  • 13
    • 0001856419 scopus 로고
    • Plastid chromosomes: Structure and evolution
    • Edited by: Bogorad L, Vasil IK. New York: Academic Press
    • Palmer JD: Plastid chromosomes: structure and evolution. In The Molecular Biology of Plastids Edited by: Bogorad L, Vasil IK. New York: Academic Press; 1991:5-53.
    • (1991) The Molecular Biology of Plastids , pp. 5-53
    • Palmer, J.D.1
  • 14
    • 0026860017 scopus 로고
    • The chloroplast genome
    • Sugiura M: The chloroplast genome. Plant Molec Biol 1992, 19:149-168.
    • (1992) Plant Molec Biol , vol.19 , pp. 149-168
    • Sugiura, M.1
  • 15
    • 0002110604 scopus 로고
    • Use of chloroplast DNA rearrangements in reconstructing plant phylogeny
    • Edited by: Soltis P, Soltis D, Doyle JJ. New York: Chapman and Hall
    • Downie SR, Palmer JD: Use of chloroplast DNA rearrangements in reconstructing plant phylogeny. In Plant Molecular Systematics Edited by: Soltis P, Soltis D, Doyle JJ. New York: Chapman and Hall; 1992:14-35.
    • (1992) Plant Molecular Systematics , pp. 14-35
    • Downie, S.R.1    Palmer, J.D.2
  • 16
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • Rokas A, Holland PWH: Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 2000, 15:454-459.
    • (2000) Trends Ecol Evol , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.H.2
  • 18
    • 0030918808 scopus 로고    scopus 로고
    • The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): Multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families
    • Cosner ME, Jansen RK, Palmer JD, Downie SR: The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families. Curr Genet 1997, 31:419-429.
    • (1997) Curr Genet , vol.31 , pp. 419-429
    • Cosner, M.E.1    Jansen, R.K.2    Palmer, J.D.3    Downie, S.R.4
  • 19
    • 0002468106 scopus 로고
    • Evolutionary significance of inversions in legume chloroplast DNAs
    • Palmer JD, Osorio B, Thompson WF: Evolutionary significance of inversions in legume chloroplast DNAs. Curr Genet 1988, 14:65-74.
    • (1988) Curr Genet , vol.14 , pp. 65-74
    • Palmer, J.D.1    Osorio, B.2    Thompson, W.F.3
  • 20
    • 0001386787 scopus 로고
    • Evolutionary significance of the loss of the chloroplast DNA inverted repeat in the Leguminosae subfamily Papilionoideae
    • Lavin M, Doyle JJ, Palmer JD: Evolutionary significance of the loss of the chloroplast DNA inverted repeat in the Leguminosae subfamily Papilionoideae. Evolution 1991, 44:390-402.
    • (1991) Evolution , vol.44 , pp. 390-402
    • Lavin, M.1    Doyle, J.J.2    Palmer, J.D.3
  • 21
    • 0000859007 scopus 로고
    • A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae)
    • Jansen RK, Palmer JD: A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae). Proc Natl Acad Sci USA 1987, 84:5818-5822.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 5818-5822
    • Jansen, R.K.1    Palmer, J.D.2
  • 22
    • 0028296307 scopus 로고
    • Structural rearrangements, including parallel inversions, within the chloroplast genome of Anemone and related genera
    • Hoot SB, Palmer JD: Structural rearrangements, including parallel inversions, within the chloroplast genome of Anemone and related genera. J Mol Evol 1994, 38:274-281.
    • (1994) J Mol Evol , vol.38 , pp. 274-281
    • Hoot, S.B.1    Palmer, J.D.2
  • 23
    • 0032695780 scopus 로고    scopus 로고
    • Three large inversions in the chloroplast genomes and one loss of the chloroplast gene rps16 suggest an early evolutionary split in the genus Adonis (Ranunculaceae)
    • Johansson JT: Three large inversions in the chloroplast genomes and one loss of the chloroplast gene rps16 suggest an early evolutionary split in the genus Adonis (Ranunculaceae). Plant Syst Evol 1999, 218:133-143.
    • (1999) Plant Syst Evol , vol.218 , pp. 133-143
    • Johansson, J.T.1
  • 25
    • 5444259169 scopus 로고    scopus 로고
    • Insights into fern evolution from mapping chloroplast genomes
    • Raubeson LA, Stein DB: Insights into fern evolution from mapping chloroplast genomes. Amer Fern J 1996, 85:183-205.
    • (1996) Amer Fern J , vol.85 , pp. 183-205
    • Raubeson, L.A.1    Stein, D.B.2
  • 26
    • 0026598577 scopus 로고
    • Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants
    • Raubeson LA, Jansen RK: Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants. Science 1992, 255:1697-1699.
    • (1992) Science , vol.255 , pp. 1697-1699
    • Raubeson, L.A.1    Jansen, R.K.2
  • 27
    • 0027418590 scopus 로고
    • Chloroplast genome rearrangements and the evolution of giant lobelias from herbaceous ancestors
    • Knox EB, Downie SR, Palmer JD: Chloroplast genome rearrangements and the evolution of giant lobelias from herbaceous ancestors. Mol Biol Evol 1993, 10:414-430.
    • (1993) Mol Biol Evol , vol.10 , pp. 414-430
    • Knox, E.B.1    Downie, S.R.2    Palmer, J.D.3
  • 28
    • 0032904367 scopus 로고    scopus 로고
    • The chloroplast genome arrangement of Lobelia thuliniana (Lobeliaceae): Expansion of the inverted repeat in an ancestor of the Campanulales
    • Knox EB, Palmer JD: The chloroplast genome arrangement of Lobelia thuliniana (Lobeliaceae): expansion of the inverted repeat in an ancestor of the Campanulales. Plant Syst Evol 1999, 214:49-64.
    • (1999) Plant Syst Evol , vol.214 , pp. 49-64
    • Knox, E.B.1    Palmer, J.D.2
  • 29
    • 0029379716 scopus 로고
    • Two copies of the DNA element, 'Wendy', in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters
    • Fan W-H, Woelfle MA, Mosig G: Two copies of the DNA element, 'Wendy', in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters. Plant Molec Biol 1995, 29:63-80.
    • (1995) Plant Molec Biol , vol.29 , pp. 63-80
    • Fan, W.-H.1    Woelfle, M.A.2    Mosig, G.3
  • 30
    • 0024692036 scopus 로고
    • Dispersed repeats and structural reorganization in subclover chloroplast DNA
    • Milligan BG, Hampton JN, Palmer JD: Dispersed repeats and structural reorganization in subclover chloroplast DNA. Mol Biol Evol 1989, 6:355-368.
    • (1989) Mol Biol Evol , vol.6 , pp. 355-368
    • Milligan, B.G.1    Hampton, J.N.2    Palmer, J.D.3
  • 31
    • 0024058894 scopus 로고
    • In wheat ctDNA, segments of ribosomal protein genes are dispersed repeats, probably conserved by non-reciprocal recombination
    • Bowman CM, Barker RF, Dyer TA: In wheat ctDNA, segments of ribosomal protein genes are dispersed repeats, probably conserved by non-reciprocal recombination. Curr Genet 1988, 14:127-136.
    • (1988) Curr Genet , vol.14 , pp. 127-136
    • Bowman, C.M.1    Barker, R.F.2    Dyer, T.A.3
  • 32
    • 0024110615 scopus 로고
    • Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species
    • Ogihara Y, Terachi T, Sasakuma T: Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species. Proc Natl Acad Sci USA 1988, 85:8573-8577.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8573-8577
    • Ogihara, Y.1    Terachi, T.2    Sasakuma, T.3
  • 33
    • 0022167389 scopus 로고
    • The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology to att-lambda
    • Howe CJ: The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology to att-lambda. Curr Genet 1985, 10:139-145.
    • (1985) Curr Genet , vol.10 , pp. 139-145
    • Howe, C.J.1
  • 35
    • 0035229986 scopus 로고    scopus 로고
    • New approaches for reconstructing phylogenies from gene order data
    • Moret BME, Wang L-S, Warnow T, Wyman S: New approaches for reconstructing phylogenies from gene order data. Bioinformatics 2001, 17:S165-S173.
    • (2001) Bioinformatics , vol.17
    • Moret, B.M.E.1    Wang, L.-S.2    Warnow, T.3    Wyman, S.4
  • 36
    • 0036143403 scopus 로고    scopus 로고
    • Genome-scale evolution: Reconstructing gene orders in the ancestral species
    • Bourque G, Pevzner PA: Genome-scale evolution: reconstructing gene orders in the ancestral species. Genome Research 2002, 12:26-36.
    • (2002) Genome Research , vol.12 , pp. 26-36
    • Bourque, G.1    Pevzner, P.A.2
  • 37
    • 0041862081 scopus 로고
    • On pollen of Campanulaceae and related families with special reference to the surface ultrastructure I. Campanulaceae subfam. Campanuloideae
    • Dunbar A: On pollen of Campanulaceae and related families with special reference to the surface ultrastructure I. Campanulaceae subfam. Campanuloideae. Bot Not 1975, 128:73-101.
    • (1975) Bot Not , vol.128 , pp. 73-101
    • Dunbar, A.1
  • 38
    • 0043196131 scopus 로고
    • On pollen of Campanulaceae and related families with special reference to the surface ultrastructure II. Campanulaceae subfam. Cyphioideae and subfam. Lobelioideae; Goodeniaceae; Sphenocleaceae
    • Dunbar A: On pollen of Campanulaceae and related families with special reference to the surface ultrastructure II. Campanulaceae subfam. Cyphioideae and subfam. Lobelioideae; Goodeniaceae; Sphenocleaceae. Bot Not 1975, 128:102-118.
    • (1975) Bot Not , vol.128 , pp. 102-118
    • Dunbar, A.1
  • 39
    • 5444263705 scopus 로고
    • Comparative palynology in Campanulaceae
    • Chapman JL: Comparative palynology in Campanulaceae. Trans Kansas Acad Sci 1966, 69:197-200.
    • (1966) Trans Kansas Acad Sci , vol.69 , pp. 197-200
    • Chapman, J.L.1
  • 40
    • 43949096618 scopus 로고
    • Morphology of the pollen of the family Campanulaceae and related families
    • Avetisjan EM: Morphology of the pollen of the family Campanulaceae and related families. Trudy Bot Inst 1967, 16:5-41.
    • (1967) Trudy Bot Inst , vol.16 , pp. 5-41
    • Avetisjan, E.M.1
  • 42
    • 0027975562 scopus 로고
    • Phylogenetic relationships in the Campanulales based on rbcL sequences
    • Cosner ME, Jansen RK, Lammers TG: Phylogenetic relationships in the Campanulales based on rbcL sequences. Plant Syst Evol 1994, 190:79-95.
    • (1994) Plant Syst Evol , vol.190 , pp. 79-95
    • Cosner, M.E.1    Jansen, R.K.2    Lammers, T.G.3
  • 43
    • 0347384374 scopus 로고
    • The serological study of the Campanulaceae: Phylogenetic relations in the tribe Phyteumateae
    • Gudkova IY, Borshchenko GP: The serological study of the Campanulaceae: Phylogenetic relations in the tribe Phyteumateae. Bot Zhurnal 1991, 6:809-817.
    • (1991) Bot Zhurnal , vol.6 , pp. 809-817
    • Gudkova, I.Y.1    Borshchenko, G.P.2
  • 44
    • 0027036328 scopus 로고
    • A revision of the genus Wahlenbergia (Campanulaceae) in Australia
    • Smith PJ: A revision of the genus Wahlenbergia (Campanulaceae) in Australia. Telopea 1992, 5:91-175.
    • (1992) Telopea , vol.5 , pp. 91-175
    • Smith, P.J.1
  • 46
    • 0344393036 scopus 로고
    • Campanulaceae
    • Edited by: Adamson RM, Salter TM. Cape Town: Juta and Co
    • Adamson RS: Campanulaceae. In Flora of the Cape Peninsula Edited by: Adamson RM, Salter TM. Cape Town: Juta and Co; 1950:740-759.
    • (1950) Flora of the Cape Peninsula , pp. 740-759
    • Adamson, R.S.1
  • 49
    • 0001822853 scopus 로고
    • Campanulaceae
    • Edited by: Tutin TG, Heywood VH, Burges NA, Moore DM, Valentine DH, Walters SM, Webb DA. Cambridge: Cambridge Univ Press
    • Tutin TG: Campanulaceae. In Flora Europaea Edited by: Tutin TG, Heywood VH, Burges NA, Moore DM, Valentine DH, Walters SM, Webb DA. Cambridge: Cambridge Univ Press; 1976:74-102.
    • (1976) Flora Europaea , pp. 74-102
    • Tutin, T.G.1
  • 50
    • 0000437242 scopus 로고
    • The genera of Sphenocleaceae and Campanulaceae in the southeastern United States
    • Rosatti TJ: The genera of Sphenocleaceae and Campanulaceae in the southeastern United States. J Arnold Arbor 1986, 67:1-64.
    • (1986) J Arnold Arbor , vol.67 , pp. 1-64
    • Rosatti, T.J.1
  • 51
    • 0000619428 scopus 로고
    • Flora of Macaronesia. Checklist of vascular plants 4. Revised ed.
    • Hansen A, Sunding P: Flora of Macaronesia. Checklist of vascular plants 4. revised ed. Sommerfeltia 1993, 17:1-295.
    • (1993) Sommerfeltia , vol.17 , pp. 1-295
    • Hansen, A.1    Sunding, P.2
  • 52
    • 2642707054 scopus 로고
    • Notes on the gamopetalous orders belonging to the campanulaceous and oleaceous groups
    • Bentham G: Notes on the gamopetalous orders belonging to the campanulaceous and oleaceous groups. J Linn Soc Bot 1875, 15:1-16.
    • (1875) J Linn Soc Bot , vol.15 , pp. 1-16
    • Bentham, G.1
  • 53
    • 0029107612 scopus 로고
    • Morphology and phylogenetic interrelationships of the Asteraceae, Calyceraceae, Campanulaceae, Goodeniaceae, and related families (Asterales)
    • Gustafsson MHG, Bremer K: Morphology and phylogenetic interrelationships of the Asteraceae, Calyceraceae, Campanulaceae, Goodeniaceae, and related families (Asterales). Amer J Bot 1995, 82:250-265.
    • (1995) Amer J Bot , vol.82 , pp. 250-265
    • Gustafsson, M.H.G.1    Bremer, K.2
  • 54
    • 0030875160 scopus 로고
    • East Gondwana ancestry of the sunflower alliance
    • Bremer K, Gustafsson MHG: East Gondwana ancestry of the sunflower alliance. Proc Natl Acad Sci USA 1987, 94:9188-9190.
    • (1987) Proc Natl Acad Sci USA , vol.94 , pp. 9188-9190
    • Bremer, K.1    Gustafsson, M.H.G.2
  • 55
    • 0003068198 scopus 로고
    • Circumscription and phylogeny of the Campanulales
    • Lammers TG: Circumscription and phylogeny of the Campanulales. Ann Missouri Bot Gard 1992, 79:388-413.
    • (1992) Ann Missouri Bot Gard , vol.79 , pp. 388-413
    • Lammers, T.G.1
  • 57
    • 0013449175 scopus 로고
    • Notes on some plants of southern Africa chiefly from Natal: III
    • Hilliard OM, Burtt BL: Notes on some plants of southern Africa chiefly from Natal: III. Notes Royal Bot Gard Edin 1973, 32:303-327.
    • (1973) Notes Royal Bot Gard Edin , vol.32 , pp. 303-327
    • Hilliard, O.M.1    Burtt, B.L.2
  • 58
    • 0342828933 scopus 로고
    • The genus Triodanis Rafinesque, and its relationships to Specularia and Campanula
    • McVaugh R: The genus Triodanis Rafinesque, and its relationships to Specularia and Campanula. Wrightia 1945, 1:13-52.
    • (1945) Wrightia , vol.1 , pp. 13-52
    • McVaugh, R.1
  • 59
    • 0348015044 scopus 로고
    • Generic status of Triodanis and Specularia
    • McVaugh R: Generic status of Triodanis and Specularia. Rhodora 1948, 50:38-49.
    • (1948) Rhodora , vol.50 , pp. 38-49
    • McVaugh, R.1
  • 60
    • 0343162778 scopus 로고
    • Identifications and reidentifications of North American plants
    • Fernald ML: Identifications and reidentifications of North American plants. Rhodora 1946, 48:207-216.
    • (1946) Rhodora , vol.48 , pp. 207-216
    • Fernald, M.L.1
  • 61
    • 0002594984 scopus 로고
    • A rapid DNA isolation for small quantities of fresh tissue
    • Doyle JJ, Doyle JL: A rapid DNA isolation for small quantities of fresh tissue. Phytochem Bull 1987, 19:11-15.
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 62
    • 0002841020 scopus 로고
    • The chloroplast and mitochondrial DNAs of Arabidopsis thaliana: Conventional genomes in an unconventional plant
    • Edited by: Sommerville C, Meyerwitz, E. Cold Spring Harbor, New York: Cold Spring Harbor Press
    • Palmer JD, Downie SR, Nugent JM, Brandt P, Unseld M, Klein M, Brennicke A, Schuster W, Borner T: The chloroplast and mitochondrial DNAs of Arabidopsis thaliana :conventional genomes in an unconventional plant. In Arabidopsis Edited by: Sommerville C, Meyerwitz, E. Cold Spring Harbor, New York: Cold Spring Harbor Press; 1994:37-62.
    • (1994) Arabidopsis , pp. 37-62
    • Palmer, J.D.1    Downie, S.R.2    Nugent, J.M.3    Brandt, P.4    Unseld, M.5    Klein, M.6    Brennicke, A.7    Schuster, W.8    Borner, T.9
  • 64
    • 5444251549 scopus 로고    scopus 로고
    • Eddie ITS sequence alignment [http://www.biosci.utexas.edu/IB/faculty/ jansen/lab/personnel/eddie/its.htm]
    • Eddie ITS Sequence Alignment
  • 65
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.