-
2
-
-
0037117538
-
-
Tew, G. N.; Liu, D. H.; Chen, B.; Doerksen, R. J.; Kaplan, J.; Carroll, P. J.; Klein, M. L.; DeGrado, W. F. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 5110-5114.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5110-5114
-
-
Tew, G.N.1
Liu, D.H.2
Chen, B.3
Doerksen, R.J.4
Kaplan, J.5
Carroll, P.J.6
Klein, M.L.7
Degrado, W.F.8
-
3
-
-
3042763069
-
-
Liu, D. H.; Choi, S.; Chen, B.; Doerksen, R. J.; Clements, D. J.; Winkler, J. D.; Klein, M. L.; DeGrado, W. F. Angew. Chem., Int. Ed. 2004, 43, 1158-1162.
-
(2004)
Angew. Chem., Int. Ed.
, vol.43
, pp. 1158-1162
-
-
Liu, D.H.1
Choi, S.2
Chen, B.3
Doerksen, R.J.4
Clements, D.J.5
Winkler, J.D.6
Klein, M.L.7
Degrado, W.F.8
-
4
-
-
0034682323
-
-
Porter, E. A.; Wang, X.; Lee, H. S.; Weisblum, B.; Gellman, S. H. Nature 2000, 405, 298-298.
-
(2000)
Nature
, vol.405
, pp. 298-298
-
-
Porter, E.A.1
Wang, X.2
Lee, H.S.3
Weisblum, B.4
Gellman, S.H.5
-
5
-
-
17344384874
-
-
Porter, E. A.; Wang, X. F.; Lee, H. S.; Weisblum, B.; Gellman, S. H. Nature 2000, 404, 565-565.
-
(2000)
Nature
, vol.404
, pp. 565-565
-
-
Porter, E.A.1
Wang, X.F.2
Lee, H.S.3
Weisblum, B.4
Gellman, S.H.5
-
6
-
-
0037165196
-
-
Zasloff, M. Nature 2002, 415, 389-395.
-
(2002)
Nature
, vol.415
, pp. 389-395
-
-
Zasloff, M.1
-
7
-
-
84906380676
-
-
Choi, S.; Clementi, D.; Pophristic, V.; Ivanov, I.; Vemparala, S.; Klein, M. L.; DeGrado, W. F. Angew. Chem., Int. Ed. 2005, 41, 6599.
-
(2005)
Angew. Chem., Int. Ed.
, vol.41
, pp. 6599
-
-
Choi, S.1
Clementi, D.2
Pophristic, V.3
Ivanov, I.4
Vemparala, S.5
Klein, M.L.6
Degrado, W.F.7
-
8
-
-
0014045470
-
-
Kriek, E.; Miller, J. A.; Juhl, U.; Miller, E. C. Biochemistry 1967, 6, 177.
-
(1967)
Biochemistry
, vol.6
, pp. 177
-
-
Kriek, E.1
Miller, J.A.2
Juhl, U.3
Miller, E.C.4
-
9
-
-
0038819564
-
-
Topper, R. Q.; Chung, K.; Boelke, C. M.; Louie, D.; Kang, J. S.; Hannan, R.; Kiang, T.; Chan, L. H. Theor. Chem. Acc. 2003, 109, 233-238.
-
(2003)
Theor. Chem. Acc.
, vol.109
, pp. 233-238
-
-
Topper, R.Q.1
Chung, K.2
Boelke, C.M.3
Louie, D.4
Kang, J.S.5
Hannan, R.6
Kiang, T.7
Chan, L.H.8
-
10
-
-
7044241365
-
-
Doerksen, R. J.; Chen, B.; Liu, D. H.; Tew, G. N.; DeGrado, W. F.; Klein, M. L. Chem.-Eur. J. 2004, 10, 5008-5016.
-
(2004)
Chem.-Eur. J.
, vol.10
, pp. 5008-5016
-
-
Doerksen, R.J.1
Chen, B.2
Liu, D.H.3
Tew, G.N.4
Degrado, W.F.5
Klein, M.L.6
-
11
-
-
0141545023
-
-
Doerksen, R. J.; Chen, B.; Klein, M. L. Chem. Phys. lett. 2003, 380, 150-157.
-
(2003)
Chem. Phys. Lett.
, vol.380
, pp. 150-157
-
-
Doerksen, R.J.1
Chen, B.2
Klein, M.L.3
-
13
-
-
0036514951
-
-
Berl, V.; Schmutz, M.; Krische, M. J.; Khoury, R. G.; Lehn, J. M. Chem. - Eur. J. 2002, 8, 1227-1244.
-
(2002)
Chem. - Eur. J.
, vol.8
, pp. 1227-1244
-
-
Berl, V.1
Schmutz, M.2
Krische, M.J.3
Khoury, R.G.4
Lehn, J.M.5
-
14
-
-
18244363925
-
-
Shih, N. Y.; Albanese, M.; Anthes, J. C.; Carruthers, N. I.; Grice, C. A.; Lin, L.; Mangiaracina, P.; Reichard, G. A.; Schwerdt, J.; Seidl, V.; Wong, S. C.; Piwinski, J. J. Bioorg. Med. Chem. Lett. 2002, 12, 141-145.
-
(2002)
Bioorg. Med. Chem. Lett.
, vol.12
, pp. 141-145
-
-
Shih, N.Y.1
Albanese, M.2
Anthes, J.C.3
Carruthers, N.I.4
Grice, C.A.5
Lin, L.6
Mangiaracina, P.7
Reichard, G.A.8
Schwerdt, J.9
Seidl, V.10
Wong, S.C.11
Piwinski, J.J.12
-
15
-
-
33644908616
-
-
Detailed results from similar studies on other model compounds will be reported elsewhere. See also Vemparala, S.; Ivanov, I.; Pophristic, V.; Spiegel, K.; Klein, M. L. J. Comput. Chem. 2006, 27, 693-700.
-
(2006)
J. Comput. Chem.
, vol.27
, pp. 693-700
-
-
Vemparala, S.1
Ivanov, I.2
Pophristic, V.3
Spiegel, K.4
Klein, M.L.5
-
16
-
-
33644900576
-
-
Gaussian, Inc.: Wallingford, CT
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, J. A., Jr.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.: Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Caussian 03; Gaussian, Inc.: Wallingford, CT, 2004.
-
(2004)
Caussian 03
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery Jr., J.A.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
Millam, J.M.11
Iyengar, S.S.12
Tomasi, J.13
Barone, V.14
Mennucci, B.15
Cossi, M.16
Scalmani, G.17
Rega, N.18
Petersson, G.A.19
Nakatsuji, H.20
Hada, M.21
Ehara, M.22
Toyota, K.23
Fukuda, R.24
Hasegawa, J.25
Ishida, M.26
Nakajima, T.27
Honda, Y.28
Kitao, O.29
Nakai, H.30
Klene, M.31
Li, X.32
Knox, J.E.33
Hratchian, H.P.34
Cross, J.B.35
Bakken, V.36
Adamo, C.37
Jaramillo, J.38
Gomperts, R.39
Stratmann, R.E.40
Yazyev, O.41
Austin, A.J.42
Cammi, R.43
Pomelli, C.44
Ochterski, J.W.45
Ayala, P.Y.46
Morokuma, K.47
Voth, G.A.48
Salvador, P.49
Dannenberg, J.J.50
Zakrzewski, V.G.51
Dapprich, S.52
Daniels, A.D.53
Strain, M.C.54
Farkas, O.55
Malick, D.K.56
Rabuck, A.D.57
Raghavachari, K.58
Foresman, J.B.59
Ortiz, J.V.60
Cui, Q.61
Baboul, A.G.62
Clifford, S.63
Cioslowski, J.64
Stefanov, B.B.65
Liu, G.66
Liashenko, A.67
Piskorz, P.68
Komaromi, I.69
Martin, R.L.70
Fox, D.J.71
Keith, T.72
Al-Laham, M.A.73
Peng, C.Y.74
Nanayakkara, A.75
Challacombe, M.76
Gill, P.M.W.77
Johnson, B.78
Chen, W.79
Wong, M.W.80
Gonzalez, C.81
Pople, J.A.82
more..
-
18
-
-
0034625269
-
-
Kendall, R. A.; Aprà, E.; Bernholdt, D. E.; Bylaska, E. J.; Dupuis, M.; Fann, G. I.; Harrison, R. J.; Ju, J.; Nichols, J. A.; Nieplocha, J.; Straatsma, T. P.; Windus, T. L.; Wong, A. T. Comput. Phys. Commun. 2000, 128, 260-283.
-
(2000)
Comput. Phys. Commun.
, vol.128
, pp. 260-283
-
-
Kendall, R.A.1
Aprà, E.2
Bernholdt, D.E.3
Bylaska, E.J.4
Dupuis, M.5
Fann, G.I.6
Harrison, R.J.7
Ju, J.8
Nichols, J.A.9
Nieplocha, J.10
Straatsma, T.P.11
Windus, T.L.12
Wong, A.T.13
-
20
-
-
84906367053
-
-
Copyright IBM Corp. Copyright Max-Planck-Institute für Festkörperforschung Stuttgart, 1997-2004
-
CPMD. Copyright IBM Corp. 1990-2001. Copyright Max-Planck-Institute für Festkörperforschung Stuttgart, 1997-2004.
-
(1990)
CPMD
-
-
-
21
-
-
0001652762
-
-
Hamprecht, F. A.; Cohen, A. J.; Tozer, D. J.; Handy, N. C. J. Chem. Phys. 1998, 109, 6264-6271.
-
(1998)
J. Chem. Phys.
, vol.109
, pp. 6264-6271
-
-
Hamprecht, F.A.1
Cohen, A.J.2
Tozer, D.J.3
Handy, N.C.4
-
23
-
-
34247648401
-
-
Laasonen, K.; Pasquarello, A.; Car, R.; Lee, C.; Vanderblit, D. Phys. Rev. B. 1993, 47, 10142-10153.
-
(1993)
Phys. Rev. B.
, vol.47
, pp. 10142-10153
-
-
Laasonen, K.1
Pasquarello, A.2
Car, R.3
Lee, C.4
Vanderblit, D.5
-
24
-
-
36449000062
-
-
Martyna, G. J.; Klein, M. L.; Tuckerman, M. J. Chem. Phys. 1992, 97, 2635-2643.
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 2635-2643
-
-
Martyna, G.J.1
Klein, M.L.2
Tuckerman, M.3
-
25
-
-
84943502952
-
-
Nose, S. Mol Phys. 1984, 52, 255-268.
-
(1984)
Mol Phys.
, vol.52
, pp. 255-268
-
-
Nose, S.1
-
28
-
-
2942532422
-
-
Wang, J.; Wolf, R. M.; Caldwell, J. W.; Kollman, P. A.; Case, D. A. J. Comput. Chem. 2004, 25, 1157-1174.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
29
-
-
0036890178
-
-
Jakalian, A.; Jack, D. B.; Bayly, C. I. J. Comput. Chem. 2002, 23, 1623-1641.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 1623-1641
-
-
Jakalian, A.1
Jack, D.B.2
Bayly, C.I.3
-
30
-
-
0001041959
-
-
Jakalian, A.; Bush, B. L.; Jack, D. B.; Bayly, C. I. J. Comput. Chem. 2000, 21, 132-146.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 132-146
-
-
Jakalian, A.1
Bush, B.L.2
Jack, D.B.3
Bayly, C.I.4
-
31
-
-
33751155339
-
-
Woods, R. J.; Dwek, R. A.; Edge, C. J.; Fraserreid, B. J. Phys. Chem. 1995, 99, 3832-3846.
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 3832-3846
-
-
Woods, R.J.1
Dwek, R.A.2
Edge, C.J.3
Fraserreid, B.4
-
32
-
-
0001398008
-
-
Wang, J. M.; Cieplak, P.; Kollman, P. A. J. Comput. Chem. 2000, 21, 1049-1074.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049-1074
-
-
Wang, J.M.1
Cieplak, P.2
Kollman, P.A.3
-
33
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
35
-
-
0004016501
-
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
36
-
-
0034864528
-
-
Mitsutake, A.; Sugita, Y.; Okamoto, Y. Biopolymers 2001, 60, 96-123.
-
(2001)
Biopolymers
, vol.60
, pp. 96-123
-
-
Mitsutake, A.1
Sugita, Y.2
Okamoto, Y.3
-
37
-
-
0042415783
-
-
Kale, L.; Skeel, R.; Bhandarkar, M.; Brunner, R.; Gursoy, A.; Krawetz, N.; Phillips, J.; Shinozaki, A.; Varadarajan, K.; Schulten, K. J. Comput. Phys. 1999, 151, 283-312.
-
(1999)
J. Comput. Phys.
, vol.151
, pp. 283-312
-
-
Kale, L.1
Skeel, R.2
Bhandarkar, M.3
Brunner, R.4
Gursoy, A.5
Krawetz, N.6
Phillips, J.7
Shinozaki, A.8
Varadarajan, K.9
Schulten, K.10
-
38
-
-
30344440627
-
-
University of California: San Francisco, CA
-
Case, D. A.; Darden, T. A.; Cheatham, T. E., III; Simmerling, C. L.; Wang, J.; Duke, R. E.; Luo, R.; Merz, K. M.; Wang, B.; Pearlman, D. A.; Crowley, M.; Brozell, S.; Tsui, V.; Gohlke, H.; Mongan, J.; Hornak, V.; Cui, G.; Beroza, P.; Schafmeister, C.; Caldwell, J. W.; Ross, W. S.; Kollman, P. A. AMBER 8; University of California: San Francisco, CA, 2004.
-
(2004)
AMBER
, vol.8
-
-
Case, D.A.1
Darden, T.A.2
Cheatham III, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Wang, B.9
Pearlman, D.A.10
Crowley, M.11
Brozell, S.12
Tsui, V.13
Gohlke, H.14
Mongan, J.15
Hornak, V.16
Cui, G.17
Beroza, P.18
Schafmeister, C.19
Caldwell, J.W.20
Ross, W.S.21
Kollman, P.A.22
more..
-
40
-
-
0034818770
-
-
Vargas, R.; Garza, J.; Dixon, D.; Hay, B. P. J. Phys. Chem. A 2001, 105, 774-778.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 774-778
-
-
Vargas, R.1
Garza, J.2
Dixon, D.3
Hay, B.P.4
-
41
-
-
0001635093
-
-
Allen, F. H.; Bellard, S.; Brice, M. D.; Cartwright, B. A.; Doubleday, A.; Higgs, H.; Hummelink, T.; Hummelinkpeters, B. G.; Kennard, O.; Motherwell, W. D. S.; Rodgers, J. R.; Watson, D. G. Acta Crystallogr., Sect. B 1979, 35, 2331-2339.
-
(1979)
Acta Crystallogr., Sect. B
, vol.35
, pp. 2331-2339
-
-
Allen, F.H.1
Bellard, S.2
Brice, M.D.3
Cartwright, B.A.4
Doubleday, A.5
Higgs, H.6
Hummelink, T.7
Hummelinkpeters, B.G.8
Kennard, O.9
Motherwell, W.D.S.10
Rodgers, J.R.11
Watson, D.G.12
-
42
-
-
0037149762
-
-
Campomanes, P.; Menendez, M. I.; Sordo, T. L. J. Phys. Chem. A 2002, 106, 2623-2628.
-
(2002)
J. Phys. Chem. A
, vol.106
, pp. 2623-2628
-
-
Campomanes, P.1
Menendez, M.I.2
Sordo, T.L.3
-
43
-
-
84906361850
-
-
note
-
3 acetanilide) capture the essential environment of the bond undergoing torsion, present in arylamides with applications we are interested in.
-
-
-
-
44
-
-
84906361851
-
-
note
-
Our BLYP results are within 0.15 kcal/mol of Vargas et al. BLYP value; the MP2 values are, however, 0.6-1.0 kcal/mol higher than Vargas' MP2/DZP value.
-
-
-
-
45
-
-
0002712922
-
-
Durig, J. R.; Bist, H. D.; Furic, K.; Qiu, J.; Little, T. S. J. Mol. Struct. 1985, 129, 45-56.
-
(1985)
J. Mol. Struct.
, vol.129
, pp. 45-56
-
-
Durig, J.R.1
Bist, H.D.2
Furic, K.3
Qiu, J.4
Little, T.S.5
-
46
-
-
84906390276
-
-
note
-
a-N bond. Also, the ortho substituent in o-methoxy NMB is an ether group, whereas it is a thioether group in substituted acetanilide. Direct comparison of analogous compounds is beyond the scope of this article and will be addressed in a future publication.
-
-
-
-
47
-
-
0036469507
-
-
Capila, I.; Linhardt, R. J. Angew. Chem., Int. Ed. 2002, 41, 391-412.
-
(2002)
Angew. Chem., Int. Ed.
, vol.41
, pp. 391-412
-
-
Capila, I.1
Linhardt, R.J.2
-
48
-
-
84906373475
-
-
note
-
Only the terminal, primary N atoms of the guanidine group were used. The secondary N atom (connecting the guanidine group to the rest of arginine and arylamide) was not used.
-
-
-
|