HCPM - Program for hierarchical clustering of protein models

Bioinformatics

Volumn 21, Issue 14, 2005, Pages 3179-3180

  Gront, Dominik ^a   Kolinski, Andrzej ^a  

^a UNIVERSITY OF WARSAW   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

AB INITIO CALCULATION; ALGORITHM; ARTICLE; CHEMICAL MODEL; COMPUTER PROGRAM; DECISION MAKING; PREDICTION; PRIORITY JOURNAL; PROCESS DESIGN; PROCESS OPTIMIZATION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; CHEMICAL STRUCTURE; CHEMISTRY; CLUSTER ANALYSIS; COMPUTER INTERFACE; COMPUTER SIMULATION; EVALUATION; INTERNET; METHODOLOGY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

PROTEIN;

ALGORITHMS; CLUSTER ANALYSIS; COMPUTER SIMULATION; INTERNET; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 25144494770     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti450     Document Type: Article

References (6)

1. Betancourt,M.R. and Skolnick,J. (2001) Finding the needle in a haystack: educing native folds from ambiguous ab initio protein structure predictions. J. Comp. Chem., 22, 339-353.
2. Jain,A.K. et al. (1999) Data clustering: A review. ACM Comput. Surv., 31, 264-323.
3. Kolinski,A. (2004) Protein modeling and structure prediction with a reduced representation. Acta Biochim. Pol., 51, 349-371.
4. Shortle,D. et al. (1998) Clustering of low-energy conformations near the native structures of small proteins. Proc. Natl Acad. Sci. USA, 95, 11158-11162.
5. Simons,K.T. et al. (1997) Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J. Mol. Biol., 268, 209-225.
6. Simons,K.T. et al. (1999) Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence- independent features of proteins. Proteins, 34, 82-95.