Cellular stress alters the transcriptional properties of promoter-bound Mot1-TBP complexes

Molecular Cell

Volumn 14, Issue 4, 2004, Pages 479-489

  Geisberg, Joseph V ^a   Struhl, Kevin ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TATA BINDING PROTEIN;

ARTICLE; BINDING AFFINITY; CHROMATIN; FUNGAL STRAIN; GENETIC TRANSCRIPTION; HEAT SHOCK; IMMUNOPRECIPITATION; NONHUMAN; PROMOTER REGION; STRESS; YEAST;

COPPER; DNA HELICASES; GENES, REGULATOR; HEAT-SHOCK RESPONSE; HYPERTONIC SOLUTIONS; KINETICS; MACROMOLECULAR SUBSTANCES; PROMOTER REGIONS (GENETICS); RNA POLYMERASE II; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TATA-BINDING PROTEIN ASSOCIATED FACTORS; TATA-BOX BINDING PROTEIN; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTOR TFIIA; TRANSCRIPTION FACTOR TFIIB;

EID: 2442557808     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2004.05.003     Document Type: Article

References (43)

1. Andrau J.C., Van Oevelen C.J., Van Teeffelen H.A., Weil P.A., Holstege F.C., Timmers H.T. Mot1p is essential for TBP recruitment to selected promoters during in vivo gene activation. EMBO J. 21:2002;5173-5183
2. Auble D.T., Hahn S. An ATP-dependent inhibitor of TBP binding to DNA. Genes Dev. 7:1993;844-856
3. Auble D.T., Hansen K.E., Mueller C.G.F., Lane W.S., Thorner J., Hahn S. Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev. 8:1994;1920-1934
4. Cang V., Auble D.T., Prelich G. A new regulatory domain on the TATA-binding protein. EMBO J. 18:1999;6662-6671
5. Causton H.C., Ren B., Koh S.S., Harbison C.T., Kanin E., Jennings E.G., Lee T.I., True H.L., Lander E.S., Young R.A. Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell. 12:2001;323-337
6. Chaya D., Hayamizu T., Bustin M., Zaret K.S. Transcription factor FoxA (HNF3) on a nucleosome at an enhancer complex in liver chromatin. J. Biol. Chem. 276:2001;44385-44389
7. Chicca J.J., Auble D.T., Pugh B.F. Cloning and biochemical characterization of TAF-172, a human homolog of yeast Mot1. Mol. Cell. Biol. 18:1998;1701-1710
8. Chou S., Chatterjee S., Lee M., Struhl K. Transcriptional activation in yeast cells lacking transcription factor IIA. Genetics. 153:1999;1573-1581
9. Collart M.A. The NOT, SPT3, and MOT1 genes functionally interact to regulate transcription at core promoters. Mol. Cell. Biol. 16:1996;6668-6676
10. Cormack B.P., Struhl K. The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells. Cell. 69:1992;685-696
11. Creton S., Svejstsrup J.Q., Collart M.A. The NC2 alpha and beta subunits display different roles in vivo. Genes Dev. 16:2002;3265-3276
12. Dasgupta A., Darst R.P., Martin K.J., Afshari C.A., Auble D.T. Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms. Proc. Natl. Acad. Sci. USA. 99:2002;2666-2671
13. Gasch A.P., Spellman P.T., Kao C.M., Carmel-Harel O., Eisen M.B., Storz G., Botstein D., Brown P.O. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell. 11:2000;4241-4257
14. Geisberg J.V., Holstege F.C., Young R.A., Struhl K. Yeast NC2 associates with the RNA polymerase II preinitiation complex and selectively affects transcription in vivo. Mol. Cell. Biol. 21:2001;2736-2742
15. Geisberg J.V., Moqtaderi Z., Kuras L., Struhl K. Mot1 associates with transcriptionally active promoters and inhibits the association of NC2 in yeast. Mol. Cell. Biol. 22:2002;8122-8134
16. Gumbs O.H., Campbell A.M., Weil P.A. High-affinity DNA binding by a Mot1-TBP complex. implications for TAF-independent transcription EMBO J. 22:2003;3131-3141
17. Hahn S., Buratowski S., Sharp P.A., Guarente L. Isolation of the gene encoding the yeast TATA binding protein TFIID. a gene identical to the SPT15 suppressor of Ty element insertions Cell. 58:1989;1173-1181
18. Holstege F.C., Jennings E.G., Wyrick J.J., Lee T.I., Hengartner C.J., Green M.R., Golub T.R., Lander E.S., Young R.A. Dissecting the regulatory circuitry of a eukaryotic genome. Cell. 95:1998;717-728
19. Iyer V.R., Horak C.E., Scafe C.S., Botstein D., Snyder M., Brown P.O. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature. 409:2001;533-538
20. Kang J.J., Auble D.T., Ranish J.A., Hahn S. Analysis of yeast transcription factor TFIIA. distinct functional regions and a Polymerase II-specific role in basal and activated transcription Mol. Cell. Biol. 15:1995;1234-1243
21. Komarnitsky P., Cho E.-J., Buratowski S. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev. 14:2000;2452-2460
22. Kuras L., Struhl K. Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature. 399:1999;609-612
23. Kuras L., Kosa P., Mencia M., Struhl K. TAF-containing and TAF-independent forms of transcriptionally active TBP in vivo. Science. 288:2000;1244-1248
24. Lee T.I., Young R.A. Regulation of gene expression by TBP-associated proteins. Genes Dev. 12:1998;1398-1408
25. Lemaire M., Xie J., Meisterernst M., Collart M.A. The NC2 repressor is dispensable in yeast mutated for the Sin4p component of the holoenzyme and plays roles similar to Mot1p in vivo. Mol. Microbiol. 36:2000;163-173
26. Li X.-Y., Virbasius A., Zhu X., Green M.R. Enhancement of TBP binding by activators and general transcription factors. Nature. 399:1999;605-609
27. Li X.-Y., Bhaumik S.R., Green M.R. Distinct classes of yeast promoters revealed by differential TAF recruitment. Science. 288:2000;1242-1244
28. Li X.Y., Bhaumik S.R., Zhu X., Li L., Shen W.C., Dixit B.L., Green M.R. Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure. Curr. Biol. 12:2002;1240-1244
29. Liu Q., Gabriel S.E., Roinick K.L., Ward R.D., Arndt K.M. Analysis of TFIIA function in vivo. evidence for a role in TATA-binding recruitment and gene-specific activation Mol. Cell. Biol. 19:1999;8673-8685
30. Madison J.M., Winston F. Evidence that Spt3 functionally interacts with Mot1, TFIIA, and TATA-binding protein to confer promoter-specific transcriptional control in Saccharomyces cerevisiae. Mol. Cell. Biol. 17:1997;287-295
31. Mencia M., Moqtaderi Z., Geisberg J.V., Kuras L., Struhl K. Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast. Mol. Cell. 9:2002;823-833
32. Moqtaderi Z., Struhl K. Genome-wide occupancy of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes. Mol. Cell. Biol. 24:2004;4118-4127
33. Moqtaderi Z., Bai Y., Poon D., Weil P.A., Struhl K. TBP-associated factors are not generally required for transcriptional activation in yeast. Nature. 382:1996;188-191
34. Muldrow T.A., Campbell A.M., Weil P.A., Auble D.T. MOT1 can activate basal transcription in vitro by regulating the distribution of TATA-binding protein between promoter and nonpromoter sites. Mol. Cell. Biol. 19:1999;2835-2845
35. Ng H.H., Robert F., Young R.A., Struhl K. Genome-wide location and regulated recruitment of the RSC nucleosome remodeling complex. Genes Dev. 16:2002;806-819
36. Poon D., Campbell A.M., Bai Y., Weil P.A. Yeast TAF170 is encoded by MOT1 and exists in a TATA box-binding protein (TBP)-TBP-associated factor complex distinct from transcription factor IID. J. Biol. Chem. 269:1994;23135-23140
37. Proft M., Struhl K. Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress. Mol. Cell. 9:2002;1307-1317
38. Ren B., Robert F., Wyrick J.J., Aparicio O., Jennings E.G., Simon I., Zeitlinger J., Schreiber J., Hannett N., Kanin E., et al. Genome-wide location and function of DNA binding proteins. Science. 290:2000;2306-2309
39. Schroeder S.C., Schwer B., Shuman S., Bentley D. Dynamic association of capping enzymes with transcribing RNA polymerase II. Genes Dev. 14:2000;2435-2440
40. Scully K.M., Jacobson E.M., Jepsen K., Lunyak V., Viadiu H., Carriere C., Rose D.W., Hooshmand F., Aggarwal A.K., Rosenfeld M.G. Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specification. Science. 290:2000;1127-1131
41. II145 functions as a core promoter selectivity factor, not a general coactivator. Cell. 90:1997;615-624
42. Soutoglou E., Talianidis I. Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation. Science. 295:2002;1901-1904
43. Stewart J.J., Stargell L.A. The stability of the TFIIA-TBP-DNA complex is dependent on the sequence of the TATAAA element. J. Biol. Chem. 276:2001;30078-30084