The minimal genome keeps growing

Environmental Microbiology

Volumn 8, Issue 4, 2006, Pages 569-573

  Galperin, Michael Y ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEBACTERIUM; ASPERGILLUS; BACTERIAL GENOME; BACTERIUM; GENETICS; GENOME; REVIEW;

ARCHAEA; ASPERGILLUS; BACTERIA; GENOME, ARCHAEAL; GENOME, BACTERIAL; GENOME, FUNGAL;

EID: 33644838466     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2006.01021.x     Document Type: Review

References (30)

1. Bai X. Zhang J. Ewing A. Miller SA. Radek A. Schevchenko D. et al. 2006 Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts J Bacteriol 188 in press
2. Beller HR. Chain PS. Letain TE. Chakicherla A. Larimer FW. Richardson PM. et al. 2006 The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans J Bacteriol 188 1473 1488
3. Benson DR. Silvester WB. 1993 Biology of Frankia strains, actinomycete symbionts of actinorhizal plants Microbiol Rev 57 293 319
4. Blattner FR. Plunkett GIII. Bloch CA. Perna NT. Burland V. Riley M. et al. 1997 The complete genome sequence of Escherichia coli K-12 Science 277 1453 1462
5. Elshahed MS. McInerney MJ. 2001 Benzoate fermentation by the anaerobic bacterium Syntrophus aciditrophicus in the absence of hydrogen-using microorganisms Appl Environ Microbiol 67 5520 5525
6. Fedorova ND. Badger JH. Robson GD. Wortman JR. Nierman WC. 2005 Comparative analysis of programmed cell death pathways in filamentous fungi BMC Genomics 6 177
7. Flores M. Morales L. Avila A. Gonzalez V. Bustos P. Garcia D. et al. 2005 Diversification of DNA sequences in the symbiotic genome of Rhizobium etli J Bacteriol 187 7185 7192
8. Fraser CM. Gocayne JD. White O. Adams MD. Clayton RA. Fleischmann RD. et al. 1995 The minimal gene complement of Mycoplasma genitalium Science 270 397 403
9. Fricke WF. Seedorf H. Henne A. Kruer M. Liesegang H. Hedderich R. et al. 2006 The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis J Bacteriol 188 642 658
10. Galperin MY. 2005 More cool news from marine bacteria Environ Microbiol 7 1864 1867
11. Galagan JE. Calvo SE. Cuomo C. Ma LJ. Wortman JR. Batzoglou S. et al. 2005 Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae Nature 438 1105 1115
12. Gerdes SY. Scholle MD. Campbell JW. Balazsi G. Ravasz E. Daugherty MD. et al. 2003 Experimental determination and system level analysis of essential genes in Escherichia coli MG1655 J Bacteriol 185 5673 5684
13. Gil R. Silva FJ. Pereto J. Moya A. 2004 Determination of the core of a minimal bacterial gene set Microbiol Mol Biol Rev 68 518 537
14. Giovannoni SJ. Tripp HJ. Givan S. Podar M. Vergin KL. Baptista D et al. 2005 Genome streamlining in a cosmopolitan oceanic bacterium Science 309 1242 1245
15. Glass JI. Assad-Garcia N. Alperovich N. Yooseph S. Lewis MR. Maruf M. et al. 2006 Essential genes of a minimal bacterium Proc Natl Acad Sci USA 103 425 430
16. Goffeau A. 2005 Genomics: multiple moulds Nature 438 1092 1093
17. Hayashi K. Morooka N. Yamamoto Y. Fujita K. Isono K. Choi S. et al. 2006 Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 Mol Syst Biol in press ). doi:10.1038/msb4100049.
18. Hutchison CA. Peterson SN. Gill SR. Cline RT. White O. Fraser CM. et al. 1999 Global transposon mutagenesis and a minimal Mycoplasma genome Science 286 2165 2169
19. Jackson BE. Bhupathiraju VK. Tanner RS. Woese CR. McInerney MJ. 1999 Syntrophus aciditrophicus sp. nov., a new anaerobic bacterium that degrades fatty acids and benzoate in syntrophic association with hydrogen-using microorganisms Arch Microbiol 171 107 114
20. Kaplan HB. 2003 Multicellular development and gliding motility in Myxococcus xanthus Curr Opin Microbiol 6 572 577
21. Koonin EV. 2000 How many genes can make a cell: the minimal-gene-set concept Annu Rev Genomics Hum Genet 1 99 116
22. Machida M. Asai K. Sano M. Tanaka T. Kumagai T. Terai G. et al. 2005 Genome sequencing and analysis of Aspergillus oryzae Nature 438 1157 1161
23. Mori H. Isono K. Horiuchi T. Miki T. 2000 Functional genomics of Escherichia coli in Japan Res Microbiol 151 121 128
24. Mushegian AR. Koonin EV. 1996 A minimal gene set for cellular life derived by comparison of complete bacterial genomes Proc Natl Acad Sci USA 93 10268 10273
25. Nierman WC. Pain A. Anderson MJ. Wortman JR. Kim HS. Arroyo J. et al. 2005 Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus Nature 438 1151 1156
26. Peterson SN. Fraser CM. 2001 The complexity of simplicity Genome Biol 2 COMMENT2002
27. Riley M. Abe T. Arnaud MB. Berlyn MK. Blattner FR. Chaudhuri RR. et al. 2006 Escherichia coli K-12: a cooperatively developed annotation snapshot -2005 Nucleic Acids Res 34 1 9
28. Sanford RA. Cole JR. Tiedje JM. 2002 Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium Appl Environ Microbiol 68 893 900
29. Sogaard-Andersen L. 2004 Cell polarity, intercellular signalling and morphogenetic cell movements in Myxococcus xanthus Curr Opin Microbiol 7 587 593
30. Toh H. Weiss BL. Perkin SA. Yamashita A. Oshima K. Hattori M. Aksoy S. 2006 Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host Genome Res 16 149 156