Structure of BthA-I complexed with p-bromophenacyl bromide: Possible correlations with lack of pharmacological activity

Acta Crystallographica Section D: Biological Crystallography

Volumn 61, Issue 12, 2005, Pages 1670-1677

  Magro, Angelo J ^a   Takeda, Agnes A S ^a   Soares, Andreimar M ^b   Fontes, Marcos R M ^a  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

BOTHROPS JARARACUSSU;

4 BROMOPHENACYL BROMIDE; 4-BROMOPHENACYL BROMIDE; ACETOPHENONE DERIVATIVE; ANTICOAGULANT AGENT; ANTIHYPERTENSIVE AGENT; ANTITHROMBOCYTIC AGENT; LIGAND; PHOSPHOLIPASE A; VIPER VENOM;

ANIMAL; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; DRUG ANTAGONISM; DRUG EFFECT; ENZYMOLOGY; PROTEIN CONFORMATION; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SNAKE; X RAY CRYSTALLOGRAPHY;

ACETOPHENONES; ANIMALS; ANTICOAGULANTS; ANTIHYPERTENSIVE AGENTS; BINDING SITES; BOTHROPS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; LIGANDS; MODELS, MOLECULAR; PHOSPHOLIPASES A; PLATELET AGGREGATION INHIBITORS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; VIPER VENOMS;

EID: 33644837979     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444905029598     Document Type: Article

References (47)

1. Andrião-Escarso, S. H., Soares, A. M., Fontes, M. R. M., Fuly, A. L., Corrêa, F. M. A., Rosa, J. C., Greene, L. J. & Giglio, J. R. (2002). Biochem. Pharmacol. 64, 723-732.
2. Arni, R. K., Fontes, M. R. M., Barberato, C., Gutiérrez, J. M., Díaz-Oreiro, C. & Ward, R. J. (1999). Arch. Biochem. Biophys. 366, 177-182.
3. Azevedo, W. F. de, Ward, R. J., Lombardi, F. R., Giglio, J. R., Soares, A. M., Fontes, M. R. M. & Arni, R. K. (1997). Protein Pept. Lett. 4, 329-334.
4. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
5. Carredano, E., Westerlund, B., Persson, B., Saarinen, M., Ramaswamy, S., Eaker, D. & Eklund, H. (1998). Toxicon, 36, 75-92.
6. Carson, M. (1997). Methods Enzymol. 277, 493-505.
7. Chandra, V., Kaur, P., Jasti, J., Betzel, C. & Singh, T. P. (2001). Acta Cryst. D57, 1793-1798.
8. Chioato, L., de Oliveira, A. H., Ruller, R., Sá, J. M. & Ward, R. J. (2002). Biochem. J. 366, 971-976.
9. Daniele, J. J., Bianco, I. D. & Fidelio, G. D. (1995). Arch. Biochem. Biophys. 318, 65-70.
10. Deenen, L. L. M. van & de Haas, G. H. (1963). Biochem. Biophys. Acta, 70, 538-553.
11. DeLano, W. L. (2002). The PyMOL Molecular Graphics System. DeLano Scientific, San Carlos, USA.
12. Georgieva, D. N., Rypniewski, W., Gabdoulkhakov, A., Genov, N. & Betzel, C. (2004). Biochem. Biophys. Res. Commun. 319, 1314-1321.
13. 2 Enzymes: Structure, Function and Mechanism, edited by R. M. Kini, pp. 321-352. Chichester: Wiley & Sons.
14. Homsi-Brandeburgo, M. I., Queiroz, L. S., Santo-Neto, H., Rodrigues-Simioni, L. & Giglio, J. R. (1988). Toxicon, 26, 615-627.
15. Jancarik, J. & Kim, S.-H. (1991). J. Appl. Cryst. 24, 409-411.
16. Jones, T. A., Bergdoll, M. & Kjeldgaard, M. (1990). Crystallographic and Modelling Methods in Molecular Design, edited by C. E. Bugg & S. E. Ealick, pp. 189-195. New York: Springer-Verlag.
17. Kini, R. M. & Evans, H. J. (1989). Toxicon, 27, 613-635.
18. Kleywegt, G. J. & Jones, T. A. (1997). Methods Enzymol. 277, 208-230.
19. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
20. Lee, W. H., da Silva-Giotto, M. T., Marangoni, S., Toyama, M. H., Polikarpov, I. & Garratt, R. C. (2001). Biochemistry, 40, 28-36.
21. MacPherson, A. (1982). Preparation and Analysis of Protein Crystals. New York: Wiley.
22. Magro, A. J., Murakami, M. T., Marcussi, S., Soares, A. M., Arni, R. K. & Fontes, M. R. M. (2004). Biochem. Biophys. Res. Commun. 323, 24-31.
23. Magro, A. J., Soares, A. M., Giglio, J. R. & Fontes, M. R. M. (2003). Biochem. Biophys. Res. Commun. 311, 713-720.
24. Navaza, J. (1994). Acta Cryst. A50, 157-163.
25. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
26. Ownby, C. L. (1998). J. Toxicol. Toxin Rev. 17, 1003-1009.
27. Pereira, M. F., Novelle, J. C., Cintra, A. C. O., Giglio, J. R., Landucci, E. C. T., Oliveira, B. & Marangoni, S. (1998). J. Protein Chem. 17, 381-386.
28. Renetseder, R., Dijkstra, B. W., Huizunga, K. H., Kalk, K. H. & Drenth, J. (1988). J. Mol. Biol. 200, 181-188.
29. Rigden, D. J., Hwa, L. W., Marangoni, S., Toyama, M. H. & Polikarpov, I. (2003). Acta Cryst. D59, 255-262.
30. Roberto, P. G., Kashima, S., Marcussi, S., Pereira, J. O., Astolfi-Filho, S., Nomizo, A., Giglio, J. R., Fontes, M. R. M., Soares, A. M. & França, S. C. (2004). Protein J. 23, 273-285.
31. Roberto, P. G., Kashima, S., Soares, A. M., Chioato, L., Faça, V. M., Fuly, A. L., Astolfi-Filho, S., Pereira, J. O. & França, S. C. (2004). Protein Expr. Purif. 37, 102-108.
32. Rosenberg, P. (1990). Handbook of Toxinology, edited by W. Shier & D. Mebs, pp. 67-277. New York: Marcel Dekker.
33. Scott, D. L., White, S. P., Otwinowski, Z., Yuan, W., Gelb, M. H. & Sigler, P. B. (1990). Science, 250, 1541-1546.
34. Serrano, S. M. T., Reichl, A. P., Mentele, R., Auerswald, E. A., Santoro, M. L., Sampaio, C. A. M., Camargo, A. C. M. & Assakura, M. T. (1999). Arch. Biochem. Biophys. 367, 26-32.
35. Silva-Giotto, M. T. da, Garratt, R. C., Oliva, G., Mascarenhas, Y. P., Giglio, J. R., Cintra, A. C. O., de Azevedo, W. F. Jr, Ami, R. K. & Ward, R. J. (1998). Proteins, 30, 442-454.
36. Six, D. A. & Dennis, E. A. (2000). Biochim. Biophys. Acta, 1488, 1-19.
37. Soares, A. M., Fontes, M. R. M. & Giglio, J. R. (2004). Curr. Org. Chem. 8, 1677-1690.
38. Soares, A. M. & Giglio, J. R. (2003). Biochemie, 42, 855-868.
39. Takeda, A. A. S., dos Santos, J. I., Marcussi, S., Silveira, L. B., Soares, A. M. & Fontes, M. R. M. (2004). Biochim. Biophys. Acta, 1699, 281-284.
40. Valentin, E. & Lambeau, G. (2000). Biochimie, 82, 815-831.
41. Volwerk, J. J., Pieterson, W. A. & de Haas, G. H. (1974). Biochemistry, 13, 1446-1454.
42. Wallace, A. C., Laskowski, R. A. & Thornton, J. M. (1995). Protein Eng. 8, 127-134.
43. Wang, X., Yang, J., Gui, L., Lin, Z., Chen, Y. & Zhou, Y. (1996). J. Mol. Biol. 255, 669-676.
44. Ward, R. J., Chioato, L., Oliveira, A. H. C., Ruller, R. & Sá, J. M. (2002). Biochem. J. 366, 971-976.
45. Watanabe, L., Soares, A. M., Ward, R. J., Fontes, M. R. M. & Arni, R. K. (2005). Biochimie, 87, 161-167.
46. Zhang, X., Zheng, L., Lin, N. Q., Ruan, K. C. & Zhou, Y. C. (1994). Chin. Biochem. J. 10, 330-334.
47. Zhao, H., Liang, T., Xiaoqiang, W., Yuancong, Z. & Zhengjiong, L. (1998). Toxicon, 36, 875-886.