Unzipping DNA from the condensed globule state - Effects of unraveling

Biopolymers

Volumn 79, Issue 6, 2005, Pages 287-291

  Lam, Pui Man ^a,b   Levy, J C ^a  

^a UNIVERSITÉ PARIS DESCARTES   (France)

^b SOUTHERN UNIVERSITY   (United States)

Author keywords

DNA; Forced induced denaturation; Gene; Polymers

Indexed keywords

GENE TRANSFER; MONOMERS; POLYMERS;

CONDENSED GLOBULE; FORCED INDUCED DENATURATION;

DNA;

DOUBLE STRANDED DNA; MONOMER; POLYMER; DNA;

BASE PAIRING; CALCULATION; DNA DENATURATION; DNA SEQUENCE; DNA STRUCTURE; FORCE; MATHEMATICAL ANALYSIS; PHASE TRANSITION; POLYMERIZATION; PREDICTION; REVIEW; THEORY; ARTICLE; CHEMICAL MODEL; CHEMISTRY; CONFORMATION; NUCLEOTIDE SEQUENCE; THEORETICAL MODEL; THERMODYNAMICS;

BASE SEQUENCE; DNA; MODELS, CHEMICAL; MODELS, THEORETICAL; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; THERMODYNAMICS;

EID: 33644688796     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20292     Document Type: Review

References (55)

1. Bustamante, C.; Bryant, Z.; S mit, S. B. Nature 2003, 421, 423.
2. Gansma, J. Vac Sci Technol 1996, B14, 1390.
3. Bustamante, C.; Keller, D. Phys Today 1995, 48, 32.
4. Svoboda, K.; Block, S. M. Annu Rev Biophys Biomol Struct 1994, 23, 247.
5. Ashkin, A. Proc Natl Acad Sci USA 1997, 94, 4853.
6. Kishino, A.; Yanagida, T., Nature 1988, 34, 74.
7. Cluzel, P.; Lebrun, A.; Heller, C.; Lavery, R.; Viovy, J. L.; Chatenay, D.; Caron, F. Science 1996, 271, 792.
8. Moy, V.; Florin, E. L.; Gaub, H. E. Science 1994, 264, 257.
9. Merkel, R.; Leung, A.; Ritchie, K.; Evan, E. Nature 1999, 397, 50.
10. Rief, M.; Gautel, M.; Oesterhelt, F.; Fernandez, J. M.; Gaub, J. Science 1997, 276, 1109.
11. Strick, T. R.; Allemand, J. F.; Croquette, V.; Bensimon, D. J Stat Phys 1988, 93, 647.
12. Strick, T. R.; Croquette, V.; Bensimon, D. Proc Natl Acad Sci USA 1998, 95, 19579.
13. Strick, T. R.; Allemand, J. F.; Croquette, V.; Bensimon, D. Physica 1999, A263, 392.
14. Leger, J. F.; Romano, G.; Sarkar, A.; Robert, J.; Bourdiue, I.; Chatenay, D.; Marko, J. F. Phys Rev Lett 1999, 83, 1066.
15. Essevaz-Roulet, B.; Bockelmann, U.; Heslot, F. Proc Natl Acad Sci USA 1997, 94, 11935.
16. Bockelman, U.; Essevaz-Roulet, B.; Heslot, F. Phys Rev Lett 1997, 79, 4489.
17. Bockelman, U.; Essevaz-Roulet, B.; Heslot, F. Phys Rev 1998, E58, 2386.
18. Bockelman, U.; Thomen P.; Essevaz-Roulet, B.; Viasnoff, V.; Heslot, F. Biophys J 2002, 82, 1537.
19. Liphardt, J.; Onoa, B.; Smith, S. B.; Tinoco, I., Jr.; Bustamante, C. Science 2001, 292, 733.
20. Coco, S.; Monasson, R. Phys Rev Lett 1999, 83, 5178.
21. Peyrard, M. Europhys Lett 1998, 44, 272.
22. Thompson, R. E.; Siggia, E. Europhys Lett 1995, 31, 335.
23. Orlandini, E.; Bhattacharjee, S. M.; Marenduzzo, D.; Maritan, A.; Seno, F. J Phys 2001, A34, L751.
24. Marenduzzo, D.; Travato, A.; Maritan, A. Phys Rev 2001, E64, 31901.
25. Marenduzzo, D.; Bhattacharjee, S. M.; Maritan, A.; Orlandini, E.; Seno, F. Phys Rev Lett 2002, 88, 28102.
26. Bhattacharjee, S. M. J Phys 2000, A33, L423.
27. Bhattacharjee, S. M. J Phys 2000, A33, 9003.
28. Lubensky, D. K.; Nelson, D. R. Phys Rev Lett 2002, 85, 1572.
29. Lubensky, D. K.; Nelson, D. R. Phys Rev 2002, E65, 31917.
30. Bhattacharjee, S. M.; Marenduzzo, D. cond-mat/0106110.
31. Mukamel, E. A.; Shaknovich, E. I. cond-mat/0108447.
32. Cocco, S.; Monasson, R.; Marko, J. F. Proc Natl Acad Sci USA 2001, 98, 8608.
33. Cocco, S.; Monasson, R.; Marko, J. F. Phys Rev 2002, E65, 014907.
34. Nelson, D. R. cond-mat/0309559.
35. Chen, J. Z. Y. cond-mat/0111462, 2001.
36. Poland, D.; Scheraga, H. A. J Chem Phys 1966, 45, 1464.
37. Fisher, M. E. J Chem Phys 1966, 45, 1469.
38. Poland, D.; Scheraga, H. A. Theory of Helix-Coil Transitions in Biopolymers; Academic: New York, 1970.
39. Wiegel, F. W. In Phase Transitions and Critical Phenomena, Domb, C., Lebowitz, J. L., Eds.; Academic: New York, 1983; Vol 7.
40. Grossberg, A. Y.; Khokhlov, A. R. Statistical Physics of Macromolecule; AIP Press: New York, 1994; Chap 7.
41. Cule, D.; Hwa, T. Phys Rev Lett 1997, 79, 2375.
42. Causo, M. S.; Coluzzi, B.; Grassberger, P. Phys Rev 2000, E62, 3958.
43. Kafri, Y.; Mukamel, D.; Peliti, L. Phys Rev Lett 2000, 85, 4988.
44. Kafri, Y.; Mukamel, D.; Peliti, L. Eur Phys J 2002, B27, 132.
45. Lyubchenko, Y. L.; Volodskii, A. V.; Frank-Kamenetskii, M. Nature 1978, 271, 28.
46. Volodskii, A. V.; Amrykyan, A. V.; Lyubchenko, Y. L.; Manenetskii, M. Biomol Struct Dyn 1984, 2, 13.
47. Tang, L. H.; Chate, H. Phys Rev Lett 2001, 86, 830.
48. Alberts, B.; Bray, D.; Lewis, J.; Ruff, M.; Roberts, K.; Watson, J. D. Molecular Biology of the Cell; Garland: New York, 1994.
49. Cooke, I. R.; Williams, D. R. M. Europhys Lett 2003, 64, 267.
50. Halperin, A.; Zhulina, E. B. Europhys Lett 1991, 15, 41.
51. Tamashiro, M. N.; Schiessel, H. Macromolecules 2000, 33, 5263.
52. Vilgis, T.; Johner, A.; Joanny, J. Eur Phys J 2000, E2, 289.
53. Santa Lucia, J. Proc Natl Acad Sci USA 1998, 95, 1460.
54. Strick, T. R.; Bensimon, D.; Croquette, V. Genetica 1999, 106, 57.
55. Danilowicz, C.; Kafri, Y.; Conroy, R. S.; Coljee, V. W.; Weeks, J.; Prentiss, M. Phys Rev Lett 2003, 93, 078101.