Transcriptome profile of macrophages from atherosclerosis-sensitive and atherosclerosis-resistant mice

Mammalian Genome

Volumn 17, Issue 3, 2006, Pages 220-229

  Smith, Jonathan D ^a   Peng, Dao Quan ^a   Dansky, Hayes M ^b   Settle, Megan ^a   Baglione, Julie ^a   Le Goff, Wilfried ^a   Chakrabarti, Enakshi ^a   Xu, Yaomin ^a   Peng, Xuejun ^a  

^a LERNER RESEARCH INSTITUTE   (United States)

^b New York Presbyterian Morgan Stanley Children's Hospital   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APOLIPOPROTEIN E; RNA; TRANSCRIPTION FACTOR;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; AORTA DISEASE; AORTA ROOT; ARTICLE; ATHEROSCLEROSIS; BINDING SITE; BONE MARROW CELL; CONTROLLED STUDY; DISEASE PREDISPOSITION; FEMALE; GENE EXPRESSION PROFILING; GENE OVEREXPRESSION; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC SUSCEPTIBILITY; GENETIC TRANSCRIPTION; MACROPHAGE; MALE; MICROARRAY ANALYSIS; MOUSE; MOUSE STRAIN; NONHUMAN; PROGENY; PROMOTER REGION; QUANTITATIVE TRAIT LOCUS; RNA ANALYSIS; TRANSCRIPTOMICS;

ALTERNATIVE SPLICING; ANIMALS; AORTA; APOLIPOPROTEINS E; ATHEROSCLEROSIS; BIOLOGICAL MARKERS; BONE MARROW; CROSSES, GENETIC; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; MACROPHAGES; MALE; MICE; MICE, INBRED AKR; MICE, INBRED C57BL; MICE, INBRED DBA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TRANSCRIPTION FACTORS;

ANIMALIA;

EID: 33644637806     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-005-0099-7     Document Type: Article

References (22)

1. Adams JC, Kureishy N, Taylor AL (2001) A role for syndecan-1 in coupling fascin spike formation by thrombospondin-1. J Cell Biol 152, 1169-1182
2. Agah R, Topol EJ (2002) Genetic testing for coronary heart disease: the approaching frontier. Exp Rev Mol Diagn 2, 448-460
3. Boring L, Gosling J, Cleary M, Charo IF (1998) Decreased lesion formation in CCR2-/- mice reveals a role for chemokines in the initiation of atherosclerosis. Nature 394, 894-897
4. Dansky HM, Barlow CB, Lominska C, Sikes JL, Kao C, et al. (2001) Adhesion of monocytes to arterial endothelium and initiation of atherosclerosis are critically dependent on vascular cell adhesion molecule-1 gene dosage. Arterioscler Thromb Vasc Biol 21, 1662-1667
5. Gu L, Okada Y, Clinton SK, Gerard C, Sukhova GK, et al. (1998) Absence of monocyte chemoattractant protein-1 reduces atherosclerosis in low density lipoprotein receptor-deficient mice. Mol Cell 2, 275-281
6. Halees AS, Leyfer D, Weng Z (2003) PromoSer: A large-scale mammalian promoter and transcription start site identification service. Nucleic Acids Res 31, 3554-3559
7. Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA (2003) Identifying biological themes within lists of genes with EASE. Genome Biol 4, R70
8. Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18(Suppl 1), S96-S104
9. Plump AS, Smith JD, Hayek T, Aalto-Setala K, Walsh A, et al. (1992) Severe hypercholesterolemia and atherosclerosis in apolipoprotein E-deficient mice created by homologous recombination in ES cells. Cell 71, 343-353
10. Plump AS, Scott CJ, Breslow JL (1994) Human apolipoprotein A-I gene expression increases high density lipoprotein and suppresses atherosclerosis in the apolipoprotein E-deficient mouse. Proc Natl Acad Sci USA 91, 9607-9611
11. Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B (2004) JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res 32, D91-D94
12. Schadt EE, Monks SA, Drake TA, Lusis AJ, Che N, et al. (2003) Genetics of gene expression surveyed in maize, mouse and man. Nature 422, 297-302
13. Smith JD (1998) Mouse models of atherosclerosis. Lab Anim Sci 48, 573-579
14. Smith JD (2003) Quantitative trait locus mapping for atherosclerosis susceptibility. Curr Opin Lipidol 14, 499-503
15. Smith JD, Trogan E, Ginsberg M, Grigaux C, Tian J, et al. (1995) Decreased atherosclerosis in mice deficient in both macrophage colony-stimulating factor (op) and apolipoprotein E. Proc Natl Acad Sci USA 92, 8264-8268
16. Smith P, James D, Dansky HM, Wittkowski KM, Moore KJ, et al. (2003) In silico quantitative trait locus map for atherosclerosis susceptibility in apolipoprotein E-deficient mice. Arterioscler Thromb Vasc Biol 23, 117-122
17. Sorensen TI, Nielsen GG, Andersen PK, Teasdale TW (1988) Genetic and environmental influences on premature death in adult adoptees. N Engl J Med 318, 727-732
18. Thorn CF, Whitehead AS (2002) Differential transcription of the mouse acute phase serum amyloid A genes in response to pro-inflammatory cytokines. Amyloid 9, 229-236
19. Wang X, Ishimori N, Korstanje R, Rollins J, Paigen B (2005a) Identifying novel genes for atherosclerosis through mouse-human comparative genetics. Am J Hum Genet 77, 1-15
20. Wang X, Ria M, Kelmenson PM, Eriksson P, Higgins DC, et al. (2005b) Positional identification of TNFSF4, encoding OX40 ligand, as a gene that influences atherosclerosis susceptibility. Nat Genet 37, 365-372
21. Wegner M (1999) From head to toes: the multiple facets of Sox proteins. Nucleic Acids Res 27, 1409-1420
22. Yang YH, Speed T (2002) Design issues for cDNA microarray experiments. Nat Rev Genet 3, 579-588