-
1
-
-
0004020161
-
-
New York: Kluwer Academic/Plenum Publishers
-
Berliner L.J., Eaton S.S., Eaton G.R. Biological Magnetic Resonance, Volume 19, Distance Measurements in Biological Systems by EPR. 2000;Kluwer Academic/Plenum Publishers, New York
-
(2000)
Biological Magnetic Resonance, Volume 19, Distance Measurements in Biological Systems by EPR
-
-
Berliner, L.J.1
Eaton, S.S.2
Eaton, G.R.3
-
2
-
-
0033812585
-
Identifying conformational changes with site-directed spin labeling
-
Hubbell W.L., Cafiso D.S., Altenbach C. Identifying conformational changes with site-directed spin labeling. Nat. Struct. Biol. 7:2000;735-739
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 735-739
-
-
Hubbell, W.L.1
Cafiso, D.S.2
Altenbach, C.3
-
3
-
-
0037093869
-
Protein structure determination using long-distance constraints from double-quantum coherence ESR: Study of T4 lysozyme
-
Borbat P.P., Mchaourab H.S., Freed J.H. Protein structure determination using long-distance constraints from double-quantum coherence ESR. Study of T4 lysozyme J. Am. Chem. Soc. 124:2002;5304-5314
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 5304-5314
-
-
Borbat, P.P.1
McHaourab, H.S.2
Freed, J.H.3
-
4
-
-
0037331105
-
Molecular mechanisms of gene regulation studied by site-directed spin labeling
-
Steinhoff H.-J., Suess B. Molecular mechanisms of gene regulation studied by site-directed spin labeling. Methods. 29:2003;188-195
-
(2003)
Methods
, vol.29
, pp. 188-195
-
-
Steinhoff, H.-J.1
Suess, B.2
-
5
-
-
0033869649
-
Interspin distances in spin-labeled metmyoglobin variants determined by saturation recovery EPR
-
Zhou Y., Bowler B.E., Lynch K., Eaton S.S., Eaton G.R. Interspin distances in spin-labeled metmyoglobin variants determined by saturation recovery EPR. Biophys. J. 79:2000;1039-1052
-
(2000)
Biophys. J.
, vol.79
, pp. 1039-1052
-
-
Zhou, Y.1
Bowler, B.E.2
Lynch, K.3
Eaton, S.S.4
Eaton, G.R.5
-
6
-
-
0029992576
-
Spin-labeled nucletide mobility in the boundary of the EcoRI endonuclease binding site
-
Keyes R.S., Cao Y.Y., Bobst E.V., Rosenberg J.M., Bobst A.M. Spin-labeled nucletide mobility in the boundary of the EcoRI endonuclease binding site. J. Biomol. Struct. Dyn. 14:1996;163-172
-
(1996)
J. Biomol. Struct. Dyn.
, vol.14
, pp. 163-172
-
-
Keyes, R.S.1
Cao, Y.Y.2
Bobst, E.V.3
Rosenberg, J.M.4
Bobst, A.M.5
-
7
-
-
0037984764
-
Monitoring RNA base structure and dynamics using site-directed spin labeling
-
Qin P.Z., Hideg K., Feigon J., Hubbell W.L. Monitoring RNA base structure and dynamics using site-directed spin labeling. Biochemistry. 42:2003;6772-6783
-
(2003)
Biochemistry
, vol.42
, pp. 6772-6783
-
-
Qin, P.Z.1
Hideg, K.2
Feigon, J.3
Hubbell, W.L.4
-
8
-
-
0032787071
-
Flexibility of duplex DNA on the submicrosecond timescale
-
Okonogi T.M., Reese A.W., Alley S.C., Hopkins P.B., Robinson B.H. Flexibility of duplex DNA on the submicrosecond timescale. Biophys. J. 77:1999;3256-3276
-
(1999)
Biophys. J.
, vol.77
, pp. 3256-3276
-
-
Okonogi, T.M.1
Reese, A.W.2
Alley, S.C.3
Hopkins, P.B.4
Robinson, B.H.5
-
9
-
-
0032847013
-
A novel 5′ displacement spin-labeling technique for electron paramagnetic resonance spectroscopy of RNA
-
Macosko J.C., Pio M.S., Tinoco I. Jr., Shin Y.-K. A novel 5′ displacement spin-labeling technique for electron paramagnetic resonance spectroscopy of RNA. RNA. 5:1999;1158-1166
-
(1999)
RNA
, vol.5
, pp. 1158-1166
-
-
MacOsko, J.C.1
Pio, M.S.2
Tinoco Jr., I.3
Shin, Y.-K.4
-
10
-
-
0035849534
-
Quantitative analysis of the Isolated GAAA tetraloop/receptor interaction in solution: A site-directed spin labeling study
-
Qin P.Z., Butcher S.E., Feigon J., Hubbell W.L. Quantitative analysis of the Isolated GAAA tetraloop/receptor interaction in solution. A site-directed spin labeling study Biochemistry. 40:2001;6929-6936
-
(2001)
Biochemistry
, vol.40
, pp. 6929-6936
-
-
Qin, P.Z.1
Butcher, S.E.2
Feigon, J.3
Hubbell, W.L.4
-
11
-
-
0035986696
-
Investigation of RNA-protein and RNA-metal ion interactions by electron paramagenetic resonance spectroscopy: The HIV TAR-Tat Motif
-
Edwards T.E., Okonogi T.M., Sigurdsson S.Th. Investigation of RNA-protein and RNA-metal ion interactions by electron paramagenetic resonance spectroscopy. The HIV TAR-Tat Motif Chem. Biol. 9:2002;699-706
-
(2002)
Chem. Biol.
, vol.9
, pp. 699-706
-
-
Edwards, T.E.1
Okonogi, T.M.2
Sigurdsson, S.Th.3
-
12
-
-
0035925208
-
Site-specific incorporation of nitroxide spin-labels into internal sites of the TAR RNA; Structure-dependent dynamics of RNA by EPR spectroscopy
-
Edwards T.E., Okonogi T.M., Robinson B.H., Sigurdsson S.Th. Site-specific incorporation of nitroxide spin-labels into internal sites of the TAR RNA; Structure-dependent dynamics of RNA by EPR spectroscopy. J. Am. Chem. Soc. 123:2001;1527-1528
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 1527-1528
-
-
Edwards, T.E.1
Okonogi, T.M.2
Robinson, B.H.3
Sigurdsson, S.Th.4
-
13
-
-
0029115328
-
Determination of the distance between two spin labels attached to a macromolecule
-
Rabenstein M.D., Shin Y.-K. Determination of the distance between two spin labels attached to a macromolecule. Proc. Natl. Acad. Sci. USA. 92:1995;8239-8243
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 8239-8243
-
-
Rabenstein, M.D.1
Shin, Y.-K.2
-
14
-
-
0034998819
-
Comparison of electron paramagnetic resonance methods to determine distances between spin labels on human carbonic anhydrase II
-
Persson M., Harbridge J.R., Hammarström P., Mitri R., Mårtensson L.-G., Carlsson U., Eaton G.R., Eaton S.S. Comparison of electron paramagnetic resonance methods to determine distances between spin labels on human carbonic anhydrase II. Biophys. J. 80:2001;2886-2897
-
(2001)
Biophys. J.
, vol.80
, pp. 2886-2897
-
-
Persson, M.1
Harbridge, J.R.2
Hammarström, P.3
Mitri, R.4
Mårtensson, L.-G.5
Carlsson, U.6
Eaton, G.R.7
Eaton, S.S.8
-
15
-
-
0039425511
-
Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using electron paramagnetic resonance spectroscopy
-
Gopalan V., Kuhne H., Biswas R., Li H., Brudvig G.W., Altman S. Mapping RNA-protein interactions in ribonuclease P from Escherichia coli using electron paramagnetic resonance spectroscopy. Biochemistry. 38:1999;1705-1714
-
(1999)
Biochemistry
, vol.38
, pp. 1705-1714
-
-
Gopalan, V.1
Kuhne, H.2
Biswas, R.3
Li, H.4
Brudvig, G.W.5
Altman, S.6
-
16
-
-
0242669315
-
Nanometer distance measurements on RNA using PELDOR
-
Schiemann O., Weber A., Edwards T.E., Prisner T.F., Sigurdsson S.T. Nanometer distance measurements on RNA using PELDOR. J. Am. Chem. Soc. 125:2003;3434-3435
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 3434-3435
-
-
Schiemann, O.1
Weber, A.2
Edwards, T.E.3
Prisner, T.F.4
Sigurdsson, S.T.5
-
17
-
-
0036940303
-
Metal ions in the structure and function of RNA
-
Pyle A.M. Metal ions in the structure and function of RNA. J. Biol. Inorg. Chem. 7:2002;679-690
-
(2002)
J. Biol. Inorg. Chem.
, vol.7
, pp. 679-690
-
-
Pyle, A.M.1
-
19
-
-
0037165996
-
Correlating structural dynamics and function in single ribozyme molecules
-
Zhuang X., Kim H., Pereira M.J.B., Babcock H.P., Walter N.G., Chu S. Correlating structural dynamics and function in single ribozyme molecules. Science. 296:2002;1473-1476
-
(2002)
Science
, vol.296
, pp. 1473-1476
-
-
Zhuang, X.1
Kim, H.2
Pereira, M.J.B.3
Babcock, H.P.4
Walter, N.G.5
Chu, S.6
-
20
-
-
0043009768
-
A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate
-
Tan E., Wilson T.J., Nahas M.K., Clegg R.M., Lilley D.M.J., Ha T. A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate. Proc. Natl. Acad. Sci. USA. 100:2003;9308-9313
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9308-9313
-
-
Tan, E.1
Wilson, T.J.2
Nahas, M.K.3
Clegg, R.M.4
Lilley, D.M.J.5
Ha, T.6
-
21
-
-
14244273876
-
In the fluorescent spotlight: Global and local conformational changes of small catalytic RNAs
-
Walter N.G., Harris D.A., Pereira M.J.B., Rueda D. In the fluorescent spotlight. Global and local conformational changes of small catalytic RNAs Biopolymers. 67:2002;224-241
-
(2002)
Biopolymers
, vol.67
, pp. 224-241
-
-
Walter, N.G.1
Harris, D.A.2
Pereira, M.J.B.3
Rueda, D.4
-
22
-
-
0023876147
-
HIV-1 tat trans-activation requires the loop sequence within tar
-
Feng S., Holland E.C. HIV-1 tat trans-activation requires the loop sequence within tar. Nature. 334:1988;165-167
-
(1988)
Nature
, vol.334
, pp. 165-167
-
-
Feng, S.1
Holland, E.C.2
-
23
-
-
0028290825
-
Control of RNA initiation and elongation at the HIV-1 promoter
-
Jones K.A., Peterlin B.M. Control of RNA initiation and elongation at the HIV-1 promoter. Annu. Rev. Biochem. 63:1994;717-743
-
(1994)
Annu. Rev. Biochem.
, vol.63
, pp. 717-743
-
-
Jones, K.A.1
Peterlin, B.M.2
-
24
-
-
3342875242
-
The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide
-
Zacharias M., Hagerman P.J. The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide. Proc. Natl. Acad. Sci. USA. 87:1995;8985-8989
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 8985-8989
-
-
Zacharias, M.1
Hagerman, P.J.2
-
25
-
-
0029852357
-
Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge
-
Aboul-ela F., Karn J., Varani G. Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge. Nucleic Acids Res. 24:1996;3974-3981
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3974-3981
-
-
Aboul-Ela, F.1
Karn, J.2
Varani, G.3
-
26
-
-
0032543957
-
A 1.3-Å resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation
-
Ippolito J., Steitz T. A 1.3-Å resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation. Proc. Natl. Acad. Sci. USA. 95:1998;9819-9824
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9819-9824
-
-
Ippolito, J.1
Steitz, T.2
-
27
-
-
0038206733
-
2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings
-
2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings. J. Mol. Biol. 329:2003;867-873
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 867-873
-
-
Al-Hashimi, H.M.1
Pitt, S.W.2
Majumdar, A.3
Xu, W.4
Patel, D.J.5
-
28
-
-
0034671676
-
Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide
-
Nifosi R., Reyes C.M., Kollman P.A. Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide. Nucleic Acids Res. 28:2000;4944-4955
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4944-4955
-
-
Nifosi, R.1
Reyes, C.M.2
Kollman, P.A.3
-
29
-
-
0033520106
-
Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA
-
Long K.S., Crothers D.M. Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA. Biochemistry. 38:1999;10059-10069
-
(1999)
Biochemistry
, vol.38
, pp. 10059-10069
-
-
Long, K.S.1
Crothers, D.M.2
-
30
-
-
0033516508
-
Domain motions accompanying Tet repressor induction defined by changes of interspin distances at selectively labeled sites
-
Tiebel B., Radzwill N., Aung-Hilbrich L.M., Helbl V., Steinhoff H.-J., Hillen W. Domain motions accompanying Tet repressor induction defined by changes of interspin distances at selectively labeled sites. J. Mol. Biol. 290:1999;229-240
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 229-240
-
-
Tiebel, B.1
Radzwill, N.2
Aung-Hilbrich, L.M.3
Helbl, V.4
Steinhoff, H.-J.5
Hillen, W.6
-
31
-
-
4043136983
-
Spin and reaction dynamics in flexible polymethylene biradicals as studied by EPR, NMR, and optical spectroscopy and magnetic field effect. Measurements and mechanisms of scalar electron spin-spin-coupling
-
Closs G.L., Forbes M.D.E., Piotrowiak P. Spin and reaction dynamics in flexible polymethylene biradicals as studied by EPR, NMR, and optical spectroscopy and magnetic field effect. Measurements and mechanisms of scalar electron spin-spin-coupling. J. Am. Chem. Soc. 114:1992;3285-3294
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 3285-3294
-
-
Closs, G.L.1
Forbes, M.D.E.2
Piotrowiak, P.3
-
32
-
-
0033607150
-
RNA tertiary folding monitored by fluorescence of covalently attached pyrene
-
Silverman S.K., Cech T.R. RNA tertiary folding monitored by fluorescence of covalently attached pyrene. Biochemistry. 38:1999;14224-14237
-
(1999)
Biochemistry
, vol.38
, pp. 14224-14237
-
-
Silverman, S.K.1
Cech, T.R.2
-
33
-
-
0028342814
-
Oligonucleotide duplexes containing 2′-amino-2′- deoxycytidines: Thermal stability and chemical reactivity
-
Aurup H., Tuschl T., Benseler F., Ludwig J., Eckstein F. Oligonucleotide duplexes containing 2′-amino-2′-deoxycytidines. thermal stability and chemical reactivity Nucleic Acids Res. 22:1994;20-24
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 20-24
-
-
Aurup, H.1
Tuschl, T.2
Benseler, F.3
Ludwig, J.4
Eckstein, F.5
-
35
-
-
0037452980
-
The structure of the inter-SH2 domain of class IA phosphoinositide 3-kinase determined by site-directed spin labeling EPR and homology modeling
-
Fu Z., Aronoff-Spencer E., Backer J.M., Gerfen G.J. The structure of the inter-SH2 domain of class IA phosphoinositide 3-kinase determined by site-directed spin labeling EPR and homology modeling. Proc. Natl. Acad. Sci. USA. 100:2003;3275-3280
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3275-3280
-
-
Fu, Z.1
Aronoff-Spencer, E.2
Backer, J.M.3
Gerfen, G.J.4
-
36
-
-
0035951101
-
Estimation of inter-residue distances in spin labeled proteins at physiological temperatures: Experimental strategies and practical limitations
-
Altenbach C., Oh K.-J., Trabanino R.J., Hideg K., Hubbell W.L. Estimation of inter-residue distances in spin labeled proteins at physiological temperatures. experimental strategies and practical limitations Biochemistry. 40:2001;15471-15482
-
(2001)
Biochemistry
, vol.40
, pp. 15471-15482
-
-
Altenbach, C.1
Oh, K.-J.2
Trabanino, R.J.3
Hideg, K.4
Hubbell, W.L.5
-
37
-
-
0036786817
-
The global conformation of the hammerhead ribozyme determined using residual dipolar couplings
-
Bondensgaard K., Mollova E.T., Pardi A. The global conformation of the hammerhead ribozyme determined using residual dipolar couplings. Biochemistry. 41:2002;11532-11542
-
(2002)
Biochemistry
, vol.41
, pp. 11532-11542
-
-
Bondensgaard, K.1
Mollova, E.T.2
Pardi, A.3
|