Spin-labeled nucleotide mobility in the boundary of the ecori endonuclease binding site

Journal of Biomolecular Structure and Dynamics

Volumn 14, Issue 2, 1996, Pages 163-172

  Keyes, Robert S ^a   Caot, Ying Y ^a   Bobst, Elisabeth V ^a   Rosenberg, John M ^b   Bobst, Albert M ^a  

^a UNIVERSITY OF CINCINNATI   (United States)

^b UNIVERSITY OF PITTSBURGH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; BINDING SITE; DNA FLANKING REGION; ELECTRON SPIN RESONANCE; ENZYME SPECIFICITY; MOLECULAR DYNAMICS; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DNA INTERACTION;

BINDING SITES; COMPUTER SIMULATION; DEOXYRIBONUCLEASE ECORI; DEOXYRIBONUCLEOTIDES; MASS SPECTROMETRY; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION;

EID: 0029992576     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1996.10508105     Document Type: Article

References (31)

1. Frederick, C. A., Grable, J., Melia, M., Samudzi, C., Jen-Jacobson, L., Wang, B.-C., Greene, P., Boyer, H. W., and Rosenberg, J. M., 1984. Nature, 309:327–331.
2. Kim, Y., Grable, J. C., Love, R., Greene, P. J., and Rosenberg, J. M., 1990. Science, 249:1307–1309.
3. Choi, J., Kim, Y., Greene, P., Hager, P., and Rosenberg, J. M., submitted for publication
4. Kim, Y., Choi, J., Grable, J. C., Greene, P., Hager, P., and Rosenberg, J. M., 1994. Structural Biology:The State of the Art, Vol. Edited by:Sarma, R. H., and Sarma, M. H., Vol. 1, 225–246. New York:Adenine Press.
5. Kumar, S., Duan, Y., Kollman, P. A., and Rosenberg, J. M., 1994. J. Biomol. Struct. Dyn., 12:487–525.
6. Toppin, C. R., 1983. Synthesis of Analogues of Uridine and 2′ -Deoxyuridine Spin Labelled at Positions 4 or 5 as Substrates for RNA and DNA Polymerizing Enzymes University of Cincinnati. Ph. D. dissertation
7. Nöthig-Laslo, V., and Bobst, A. M., 1991. Croatica ChemicaActa, 64:1–8.
8. Bobst, A. M., Pauly, G. T., Keyes, R. S., and Bobst, E. V., 1988. FEBS Lett., 228:33–36.
9. Strobel, O. K., Keyes, R. S., and Bobst, A. M., 1990. Biochemistry, 29:8522–8528.
10. Bobst, E. V., Keyes, R. S., Cao, Y. Y., and Bobst, A. M., 1996. Biochemistry, 35:9309–9313.
11. Keyes, R. S., and Bobst, A. M., 1995. Biochemistry, 34:9265–9276.
12. Keyes, R. S., Bobst, E. V., Cao, Y. Y., and Bobst, A. M., Biophys. J. submitted for publication
13. Pauly, G. T., Thomas, I. E., and Bobst, A. M., 1987. Biochemistry, 26:7304–7310.
14. Keyes, R. S., 1994. Probing Nucleic Acid Dynamics and Protein-Nucleic Acid Interactions University of Cincinnati. Ph. D. dissertation
15. Hustedt, E. J., Cobb, C. E., Beth, A. H., and Beechem, J. M., 1993. Biophys. J., 64:614–621.
16. Schneider, D. J., and Freed, J. H., 1989. Spin Labeling:Theory and Applications, Vol. 8, Biol. Magn. Reson. Edited by:Berliner, L. J., and Reuben, J., 1–76. New York:Plenum.
17. Hustedt, E. J., Spaltenstein, A., Kirchner, J. J., Hopkins, P. B., and Robinson, B. H., 1993. Biochemistry, 32:1774–1787.
18. Tirado, M. M., and García de la Torre, J., 1980. J. Chem. Phys., 73:1986–1993.
19. Spaltenstein, A., Robinson, B. H., and Hopkins, P. B., 1989. Biochemistry, 28:9484–9495.
20. Griffith, O. H., and Jost, P. C., 1976. Spin Labeling:Theory and Applications Edited by:Berliner, L. J., 453–523. New York:Academic Press.
21. Steinhoff, H. J., 1988. J. Biochem. Biophys. Meth., 17:237–248.
22. Cotton, F. A., and Felthouse, T. R., 1982. Inorg. Chem., 21:2667–2675.
23. Hagler, A. T., 1985. Conformation in Biology and Drug Design, The Peptides, Vol. Edited by:Gross, E., and Meienhofer, J., Vol. 7, 213–299. New York:Academic Press.
24. Garcia, A. E., Soumpasis, D. M., and Jovin, T. M., 1994. Biophys. J., 66:1742–1755.
25. Keyes, R. S., and Bobst, A. M., 1993. Biophys. Chem., 45:281–303.
26. Sinden, R. R., 1994. DNA Structure and Function San Diego:Academic Press.
27. Crothers, D. M., 1992. Molecular Structure and Life:Molecular Recognition of Nucleic Acids Edited by:Kyogoku, Y., and Nishimura, Y., 67–77. Boca Raton:CRC Press.
28. Cassol, R., Ferrarini, A., and Nordio, P. L., 1993. J. Phys. Chem., 97:2933–2940.
29. Polimeno, A., and Freed, J. H., 1995. J. Phys. Chem., 99:10995–11006.
30. Rosenberg, J. M., Kumar, S., Duan, Y., and Kollman, P., 1994. Proceedings of International Conference on Computational Physics II 228–237.
31. Bobst, E. V., Keyes, R. S., Resendez-Perez, D., Gehring, W., and Bobst, A. M., 1996. Biophys. J., 70:A157