-
1
-
-
0025158208
-
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
-
G. Eriani, M. Delarue, O. Poch, J. Gangloff, and D. Moras Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs Nature 47 1990 203 206
-
(1990)
Nature
, vol.47
, pp. 203-206
-
-
Eriani, G.1
Delarue, M.2
Poch, O.3
Gangloff, J.4
Moras, D.5
-
2
-
-
0036809656
-
Did tRNA synthetase classes arise on opposite strands of the same gene
-
C.W. Carter Jr., and W.L. Duax Did tRNA synthetase classes arise on opposite strands of the same gene Mol. Cell. 10 2002 705 708
-
(2002)
Mol. Cell.
, vol.10
, pp. 705-708
-
-
Carter Jr., C.W.1
Duax, W.L.2
-
3
-
-
0035478911
-
Aminoacyl-tRNA synthetases: Potential markers of genetic code development
-
L. Ribas de Pouplana, and P. Schimmel Aminoacyl-tRNA synthetases: potential markers of genetic code development Trends Biochem. Sci. 26 2001 591 596
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 591-596
-
-
Ribas De Pouplana, L.1
Schimmel, P.2
-
4
-
-
0030946935
-
Four primordial modes of tRNA-synthetase recognition, determined by the (G,C) operational code
-
S.N. Rodin, and S. Ohno Four primordial modes of tRNA-synthetase recognition, determined by the (G,C) operational code Proc. Natl. Acad. Sci. USA 94 1997 5183 5188
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5183-5188
-
-
Rodin, S.N.1
Ohno, S.2
-
5
-
-
0027255483
-
Cognition, mechanism, and evolutionary relationships in aminoacyl-tRNA synthetases
-
C.W. Carter Jr. Cognition, mechanism, and evolutionary relationships in aminoacyl-tRNA synthetases Annu. Rev. Biochem. 62 1993 715 748
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 715-748
-
-
Carter Jr., C.W.1
-
6
-
-
0028906228
-
Speculations on the origin of the genetic code
-
H. Hartman Speculations on the origin of the genetic code J. Mol. Evol. 40 1995 541 544
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 541-544
-
-
Hartman, H.1
-
7
-
-
0023488772
-
Which organic compounds could have occurred on the prebiotic earth
-
S. Miller Which organic compounds could have occurred on the prebiotic earth Cold Spring Harb. Symp. Quant. Biol. 52 1987 17 27
-
(1987)
Cold Spring Harb. Symp. Quant. Biol.
, vol.52
, pp. 17-27
-
-
Miller, S.1
-
8
-
-
0037063348
-
Molecular evolution from abiotic scratch
-
E.N. Trifonov, and I. Berezovsky Molecular evolution from abiotic scratch FEBS Lett. 527 2002 1 4
-
(2002)
FEBS Lett.
, vol.527
, pp. 1-4
-
-
Trifonov, E.N.1
Berezovsky, I.2
-
9
-
-
4143139971
-
The triplet code from first principles
-
E. Trifonov The triplet code from first principles J. Biomol. Struct. Dyn. 22 2004 1 11
-
(2004)
J. Biomol. Struct. Dyn.
, vol.22
, pp. 1-11
-
-
Trifonov, E.1
-
10
-
-
2342637052
-
Amino acid biogenesis, evolution of the genetic code and aminoacyl-tRNA synthetases
-
L. Klipcan, and M. Safro Amino acid biogenesis, evolution of the genetic code and aminoacyl-tRNA synthetases J. Theor. Biol. 228 2004 389 396
-
(2004)
J. Theor. Biol.
, vol.228
, pp. 389-396
-
-
Klipcan, L.1
Safro, M.2
-
11
-
-
0001202417
-
Evolution of the structure of ferredoxin based on living relicts of primitive amino acid sequences
-
R. Eck, and M. Dayhoff Evolution of the structure of ferredoxin based on living relicts of primitive amino acid sequences Science 152 1966 363 366
-
(1966)
Science
, vol.152
, pp. 363-366
-
-
Eck, R.1
Dayhoff, M.2
-
12
-
-
14144251192
-
A universal trend of amino acids gain and loss in protein evolution
-
I. Jordan, F. Kondrashov, I. Adzhubei, Y. Wolf, E. Koonin, A. Kondrashov, and S. Sunyaev A universal trend of amino acids gain and loss in protein evolution Nature 433 2005 633 637
-
(2005)
Nature
, vol.433
, pp. 633-637
-
-
Jordan, I.1
Kondrashov, F.2
Adzhubei, I.3
Wolf, Y.4
Koonin, E.5
Kondrashov, A.6
Sunyaev, S.7
-
13
-
-
0035876479
-
Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria
-
S. Fukuchi, and K. Nishikawa Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria J. Mol. Biol. 309 2001 835 843
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 835-843
-
-
Fukuchi, S.1
Nishikawa, K.2
-
14
-
-
0035312933
-
Identification of thermophilic species by the amino acid compositions deduced from their genomes
-
D. Kreil, and C. Ouzounis Identification of thermophilic species by the amino acid compositions deduced from their genomes Nucleic Acids Res. 29 2001 1608 1615
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1608-1615
-
-
Kreil, D.1
Ouzounis, C.2
-
15
-
-
0037135069
-
Preferred codons and amino acid couples in hyperthermophiles
-
PREPRINT0006.
-
De Farias, S. and Bonato, M. (2002) Preferred codons and amino acid couples in hyperthermophiles. Genome Biol., 3, PREPRINT0006.
-
(2002)
Genome Biol.
, pp. 3
-
-
De Farias, S.1
Bonato, M.2
-
16
-
-
0242290154
-
Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content
-
G. Singer, and D. Hickey Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content Gene 317 2003 39 47
-
(2003)
Gene
, vol.317
, pp. 39-47
-
-
Singer, G.1
Hickey, D.2
-
18
-
-
0037350415
-
The phylogenetic extent of metabolic enzymes and pathways
-
J. Peregrin-Alvarez, S. Tsoka, and C. Ouzounis The phylogenetic extent of metabolic enzymes and pathways Genome Res. 13 2003 422 427
-
(2003)
Genome Res.
, vol.13
, pp. 422-427
-
-
Peregrin-Alvarez, J.1
Tsoka, S.2
Ouzounis, C.3
-
19
-
-
0033215210
-
Pathway alignment: Application to the comparative analysis of glycolytic enzymes
-
T. Dandekar, S. Schuster, B. Snel, M. Huynen, and P. Bork Pathway alignment: application to the comparative analysis of glycolytic enzymes Biochem. J. 343 1999 115 124
-
(1999)
Biochem. J.
, vol.343
, pp. 115-124
-
-
Dandekar, T.1
Schuster, S.2
Snel, B.3
Huynen, M.4
Bork, P.5
-
20
-
-
0032737311
-
Patterns of temperature adaptation in proteins from Methanococcus and Bacillus
-
J. McDonald, A. Grasso, and L. Rejto Patterns of temperature adaptation in proteins from Methanococcus and Bacillus Mol. Biol. Evol. 16 1999 1785 1790
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1785-1790
-
-
McDonald, J.1
Grasso, A.2
Rejto, L.3
-
21
-
-
0035890653
-
Post-transcriptional modification in archaeal tRNAs: Identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales
-
J.A. McCloskey, D.E. Graham, S. Zhou, P.F. Crain, M. Ibba, J. Konisky, D. Soll, and G.J. Olsen Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales Nucleic Acids Res. 29 2001 4699 4706
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4699-4706
-
-
McCloskey, J.A.1
Graham, D.E.2
Zhou, S.3
Crain, P.F.4
Ibba, M.5
Konisky, J.6
Soll, D.7
Olsen, G.J.8
-
22
-
-
0348047627
-
Proteomic signatures: Amino acid and oligopeptide compositions differentiate among phyla
-
I. Pe'er, C.E. Felder, O. Man, I. Silman, J.L. Sussman, and J.S. Beckmann Proteomic signatures: amino acid and oligopeptide compositions differentiate among phyla Proteins 54 2004 20 40
-
(2004)
Proteins
, vol.54
, pp. 20-40
-
-
Pe'Er, I.1
Felder, C.E.2
Man, O.3
Silman, I.4
Sussman, J.L.5
Beckmann, J.S.6
-
23
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
K. Nelson, R. Clayton, S. Gill, M. Gwinn, R. Dodson, D. Haft, E. Hickey, and J. Peterson Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima Nature 399 1999 323 329
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.1
Clayton, R.2
Gill, S.3
Gwinn, M.4
Dodson, R.5
Haft, D.6
Hickey, E.7
Peterson, J.8
-
24
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
C.R. Woese, O. Kandler, and M. Wheelis Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya Proc. Natl. Acad. Sci. USA 87 1990 4576 4579
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.3
-
25
-
-
0346104820
-
The universal ancestor and the ancestor of bacteria were hyperthermophiles
-
M. Di Giulio The universal ancestor and the ancestor of bacteria were hyperthermophiles J. Mol. Evol. 57 2003 721 730
-
(2003)
J. Mol. Evol.
, vol.57
, pp. 721-730
-
-
Di Giulio, M.1
-
26
-
-
5044244494
-
A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor
-
D.J. Brooks, J.R. Fresco, and M. Singh A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor Bioinformatics 20 2004 2251 2257
-
(2004)
Bioinformatics
, vol.20
, pp. 2251-2257
-
-
Brooks, D.J.1
Fresco, J.R.2
Singh, M.3
-
27
-
-
0037118037
-
Phylogeny: A non-hyperthermophilic ancestor for bacteria
-
C. Brochier, and H. Philippe Phylogeny: a non-hyperthermophilic ancestor for bacteria Nature 417 2002 244
-
(2002)
Nature
, vol.417
, pp. 244
-
-
Brochier, C.1
Philippe, H.2
-
28
-
-
0033534584
-
A non-hyperthermophilic common ancestor to extant life forms
-
N. Galtier, N. Tourasse, and M. Gouy A non-hyperthermophilic common ancestor to extant life forms Science 283 1999 220 221
-
(1999)
Science
, vol.283
, pp. 220-221
-
-
Galtier, N.1
Tourasse, N.2
Gouy, M.3
-
30
-
-
0037172796
-
Elucidation of factors responsible for enhanced thermal stability of proteins: A structural genomics based study
-
S. Chakravarty, and R. Varadarajan Elucidation of factors responsible for enhanced thermal stability of proteins: a structural genomics based study Biochemistry 41 2002 8152 8156
-
(2002)
Biochemistry
, vol.41
, pp. 8152-8156
-
-
Chakravarty, S.1
Varadarajan, R.2
-
31
-
-
0037019808
-
Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: A global picture with correspondence analysis
-
F. Tekaia, E. Yeramian, and B. Dujon Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis Gene 297 2002 51 60
-
(2002)
Gene
, vol.297
, pp. 51-60
-
-
Tekaia, F.1
Yeramian, E.2
Dujon, B.3
-
32
-
-
0035098779
-
Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
-
C. Vieille, and G. Zeikus Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability Microbiol. Mol. Biol. Rev. 65 2001 1 43
-
(2001)
Microbiol. Mol. Biol. Rev.
, vol.65
, pp. 1-43
-
-
Vieille, C.1
Zeikus, G.2
-
33
-
-
0034234758
-
The adaptor hypothesis revisited
-
M. Ibba, H.D. Becker, C. Stathopoulos, D.L. Tumbula, and D. Söll The adaptor hypothesis revisited Trends Biochem. Sci. 25 2000 311 316
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 311-316
-
-
Ibba, M.1
Becker, H.D.2
Stathopoulos, C.3
Tumbula, D.L.4
Söll, D.5
-
34
-
-
33344461481
-
Aminoacyl-tRNA synthetase structure and evolution
-
J. Lapointe L. Brakier-Gingras Landes Bioscience
-
D. Soll, and M. Ibba Aminoacyl-tRNA synthetase structure and evolution J. Lapointe L. Brakier-Gingras Translation Mechanisms 2003 Landes Bioscience 25 33
-
(2003)
Translation Mechanisms
, pp. 25-33
-
-
Soll, D.1
Ibba, M.2
-
35
-
-
20144380970
-
RNA-dependent cysteine biosynthesis in Archaea
-
A. Sauerwald, W. Zhu, T. Major, H. Roy, S. Palioura, D. Jahn, W. Whitman, J. Yates, M. Ibba, and D. Soll RNA-dependent cysteine biosynthesis in Archaea Science 307 2005 1969 1972
-
(2005)
Science
, vol.307
, pp. 1969-1972
-
-
Sauerwald, A.1
Zhu, W.2
Major, T.3
Roy, H.4
Palioura, S.5
Jahn, D.6
Whitman, W.7
Yates, J.8
Ibba, M.9
Soll, D.10
|