-
1
-
-
0024284078
-
A flexible multiple sequence alignment program
-
Martinez HM: A flexible multiple sequence alignment program. Nucleic Acids Res 1988, 16:1683-1691.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 1683-1691
-
-
Martinez, H.M.1
-
2
-
-
0023045778
-
A multiple sequence alignment program
-
Sobel E, Martinez HM: A multiple sequence alignment program. Nucleic Acids Res 1986, 14:363-374.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 363-374
-
-
Sobel, E.1
Martinez, H.M.2
-
3
-
-
0025832710
-
MASH: An interactive program for multiple alignment and consensus sequence construction for biological sequences
-
Chappey C, Danckaert A, Dessen P, Hazout S: MASH: an interactive program for multiple alignment and consensus sequence construction for biological sequences. Comput Appl Biosci 1991, 7:195-202.
-
(1991)
Comput Appl Biosci
, vol.7
, pp. 195-202
-
-
Chappey, C.1
Danckaert, A.2
Dessen, P.3
Hazout, S.4
-
4
-
-
84874650914
-
-
BLAST
-
BLAST [http://www.ncbi.nlm.nih.gov/BLAS/]
-
-
-
-
5
-
-
84874660487
-
-
CLUSTALW
-
CLUSTALW [http://www.ebi.ac.uk/clustalw/]
-
-
-
-
6
-
-
84874666693
-
-
MUSCA
-
MUSCA [http://cbcsrv.watson.ibm.com/Tmsa.html]
-
-
-
-
7
-
-
0036493226
-
RNase 8, a novel RNase A superfamily ribonuclease expressed uniquely in placenta
-
Zhang J, Dyer KD, Rosenberg HF: RNase 8, a novel RNase A superfamily ribonuclease expressed uniquely in placenta. Nucleic Acids Res 2002, 30:1169-1175.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1169-1175
-
-
Zhang, J.1
Dyer, K.D.2
Rosenberg, H.F.3
-
8
-
-
0019853596
-
Hybridomas: A new dimension in biological analyses
-
Kennett RH: Hybridomas: a new dimension in biological analyses. In Vitro 1981, 17:1036-1050.
-
(1981)
Vitro
, vol.17
, pp. 1036-1050
-
-
Kennett, R.H.1
-
9
-
-
0022236552
-
Prediction of sequential antigenic regions in proteins
-
Welling GW, Weijer WJ, van der Zee R, Welling-Wester S: Prediction of sequential antigenic regions in proteins. FEBS Lett 1985, 188:215-218.
-
(1985)
FEBS Lett
, vol.188
, pp. 215-218
-
-
Welling, G.W.1
Weijer, W.J.2
van der Zee, R.3
Welling-Wester, S.4
-
10
-
-
0020482393
-
Tapping the immunological repertoire to produce antibodies of predetermined specificity
-
Lerner RA: Tapping the immunological repertoire to produce antibodies of predetermined specificity. Nature 1982, 299:593-596.
-
(1982)
Nature
, vol.299
, pp. 593-596
-
-
Lerner, R.A.1
-
11
-
-
0033652905
-
PROTEAN. Protein sequence analysis and prediction
-
Plasterer TN: PROTEAN. Protein sequence analysis and prediction. Mol Biotech 2000, 16:117-126.
-
(2000)
Mol Biotech
, vol.16
, pp. 117-126
-
-
Plasterer, T.N.1
-
12
-
-
0034978631
-
Identification and characterization of human eosinophil cationic protein by an epitope-specific antibody
-
Boix E, Carreras E, Nikolovski Z, Cuchillo CM, Nogues MV: Identification and characterization of human eosinophil cationic protein by an epitope-specific antibody. J Leukoc Biol 2001, 69:1027-1035.
-
(2001)
J Leukoc Biol
, vol.69
, pp. 1027-1035
-
-
Boix, E.1
Carreras, E.2
Nikolovski, Z.3
Cuchillo, C.M.4
Nogues, M.V.5
-
13
-
-
0033593472
-
Refined crystal structures of native human angiogenin and two active site variants: Implications for the unique functional properties of an enzyme involved in neovascularisation during tumour growth
-
Leonidas DD, Shapiro R, Allen SC, Subbarao GV, Veluraja K, Acharya KR: Refined crystal structures of native human angiogenin and two active site variants: implications for the unique functional properties of an enzyme involved in neovascularisation during tumour growth. J Mol Biol 1999, 285:1209-1233.
-
(1999)
J Mol Biol
, vol.285
, pp. 1209-1233
-
-
Leonidas, D.D.1
Shapiro, R.2
Allen, S.C.3
Subbarao, G.V.4
Veluraja, K.5
Acharya, K.R.6
-
14
-
-
18644386251
-
Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains
-
Ogiso H, Ishitani R, Nureki O, Fukai S, Yamanaka M, Kim JH, Saito K, Sakamoto A, Inoue M, Shirouzu M, Yokoyama S: Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell 2002, 110:775-787.
-
(2002)
Cell
, vol.110
, pp. 775-787
-
-
Ogiso, H.1
Ishitani, R.2
Nureki, O.3
Fukai, S.4
Yamanaka, M.5
Kim, J.H.6
Saito, K.7
Sakamoto, A.8
Inoue, M.9
Shirouzu, M.10
Yokoyama, S.11
-
15
-
-
0038723727
-
Global orientation of bound MMP-3 and N-TIMP-I in solution via residual dipolar couplings
-
Arumugam S, Van Doren SR: Global orientation of bound MMP-3 and N-TIMP-I in solution via residual dipolar couplings. Biochemistry 2003, 42:7950-7958.
-
(2003)
Biochemistry
, vol.42
, pp. 7950-7958
-
-
Arumugam, S.1
Van Doren, S.R.2
-
16
-
-
0027533506
-
Structure-function relationship of human neutrophil collagenase: Identification of regions responsible for substrate specificity and general proteinase activity
-
Hirose T, Patterson C, Pourmotabbed T, Mainardi CL, Hasty KA: Structure-function relationship of human neutrophil collagenase: identification of regions responsible for substrate specificity and general proteinase activity. Proc Natl Acad Sci U S A 1993, 90:2569-2573.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 2569-2573
-
-
Hirose, T.1
Patterson, C.2
Pourmotabbed, T.3
Mainardi, C.L.4
Hasty, K.A.5
-
17
-
-
0034818299
-
Critical role of glutamic acid 202 in the enzymatic activity of stromelysin- I (MMP-3)
-
Arza B, De Maeyer M, Felez J, Collen D, Lijnen HR: Critical role of glutamic acid 202 in the enzymatic activity of stromelysin- I (MMP-3). Eur J Biochem 2001, 268:826-831.
-
(2001)
Eur J Biochem
, vol.268
, pp. 826-831
-
-
Arza, B.1
De Maeyer, M.2
Felez, J.3
Collen, D.4
Lijnen, H.R.5
-
18
-
-
0036848069
-
Structural mechanism of Smad4 recognition by the nuclear oncoprotein Ski: Insights on Ski-mediated repression of TGF-beta signaling
-
Wu JW, Krawitz AR, Chai J, Li W, Zhang F, Luo K, Shi Y: Structural mechanism of Smad4 recognition by the nuclear oncoprotein Ski: insights on Ski-mediated repression of TGF-beta signaling. Cell 2002, 111:357-367.
-
(2002)
Cell
, vol.111
, pp. 357-367
-
-
Wu, J.W.1
Krawitz, A.R.2
Chai, J.3
Li, W.4
Zhang, F.5
Luo, K.6
Shi, Y.7
-
19
-
-
0030837455
-
A structural basis for mutational inactivation of the tumour suppressor Smad4
-
Shi Y, Hata A, Lo RS, Massague J, Pavletich NP: A structural basis for mutational inactivation of the tumour suppressor Smad4. Nature 1997,388:87-93.
-
(1997)
Nature
, vol.388
, pp. 87-93
-
-
Shi, Y.1
Hata, A.2
Lo, R.S.3
Massague, J.4
Pavletich, N.P.5
-
20
-
-
0033573092
-
Crystal structure of a transcriptionally active Smad4 fragment
-
Qin B, Lam SS, Lin K: Crystal structure of a transcriptionally active Smad4 fragment. Structure Fold Des 1999, 7:1493-1503.
-
(1999)
Structure Fold Des
, vol.7
, pp. 1493-1503
-
-
Qin, B.1
Lam, S.S.2
Lin, K.3
-
21
-
-
0035832858
-
Stabilization of pancreatic ribonuclease A by immobilization on Sepharose-linked antibodies that recognize the labile region of the enzyme
-
Younus H, Owais M, Rao DN, Saleemuddin M: Stabilization of pancreatic ribonuclease A by immobilization on Sepharose-linked antibodies that recognize the labile region of the enzyme. Biochim Biophys Acta 2001, 1548:114-120.
-
(2001)
Biochim Biophys Acta
, vol.1548
, pp. 114-120
-
-
Younus, H.1
Owais, M.2
Rao, D.N.3
Saleemuddin, M.4
-
22
-
-
0035823075
-
Structure of MsbA from E.coli: A homolog of the multidrug resistance ATP binding cassette (ABC) transporters
-
Chang G, Roth CB: Structure of MsbA from E.coli: a homolog of the multidrug resistance ATP binding cassette (ABC) transporters. Science 2001, 293:1793-1800.
-
(2001)
Science
, vol.293
, pp. 1793-1800
-
-
Chang, G.1
Roth, C.B.2
-
23
-
-
0038799725
-
Structure of MsbA from Vibrio cholera: A multidrug resistance ABC transporter homolog in a closed conformation
-
Chang G: Structure of MsbA from Vibrio cholera: a multidrug resistance ABC transporter homolog in a closed conformation. J Mol Biol 2003, 330:419-430.
-
(2003)
J Mol Biol
, vol.330
, pp. 419-430
-
-
Chang, G.1
-
24
-
-
84874653988
-
-
SCBT
-
SCBT [http://www.scbt.com/]
-
-
-
-
25
-
-
0028262928
-
Crystal structure of human angiogenin reveals the structural basis for its functional divergence from ribonuclease
-
Acharya KR, Shapiro R, Allen SC, Riordan JF, Vallee BL: Crystal structure of human angiogenin reveals the structural basis for its functional divergence from ribonuclease. Proc Natl Acad Sci U S A 1994, 91:2915-2919.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 2915-2919
-
-
Acharya, K.R.1
Shapiro, R.2
Allen, S.C.3
Riordan, J.F.4
Vallee, B.L.5
-
26
-
-
0347089039
-
Selective abolition of pancreatic RNase binding to its inhibitor protein
-
Kumar K, Brady M, Shapiro R. Selective abolition of pancreatic RNase binding to its inhibitor protein. Proc Natl Acad Sci U S A 2004, 101:53-58.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 53-58
-
-
Kumar, K.1
Brady, M.2
Shapiro, R.3
-
27
-
-
0030604713
-
Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy
-
Sorimachi K, Jacks AJ, Le Gal-Coeffet MF, Williamson G, Archer DB, Williamson MP: Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy. J Mol Biol 1996, 259:970-987.
-
(1996)
J Mol Biol
, vol.259
, pp. 970-987
-
-
Sorimachi, K.1
Jacks, A.J.2
Le Gal-Coeffet, M.F.3
Williamson, G.4
Archer, D.B.5
Williamson, M.P.6
-
28
-
-
2542464052
-
Unique interaction of scorpion toxins with the hERG channel
-
Korolkova YV, Tseng GN, Grishin EV: Unique interaction of scorpion toxins with the hERG channel. J Mol Recognit 2004, 17:209-217.
-
(2004)
J Mol Recognit
, vol.17
, pp. 209-217
-
-
Korolkova, Y.V.1
Tseng, G.N.2
Grishin, E.V.3
-
29
-
-
0345708353
-
The mammalian basic helix-loop-helix/PAS family of transcriptional regulators
-
Kewley RJ, Whitelaw ML, Chapman-Smith A: The mammalian basic helix-loop-helix/PAS family of transcriptional regulators. Int J Biochem Cell Biol 2004, 36:189-204.
-
(2004)
Int J Biochem Cell Biol
, vol.36
, pp. 189-204
-
-
Kewley, R.J.1
Whitelaw, M.L.2
Chapman-Smith, A.3
-
30
-
-
0014722938
-
Antigenicity of polypeptides (poly-alpha-amino acids). Distribution of sheep antibodies to polymers of alpha-L-amino acids of varying net electrical charge and lysozyme
-
Stylos WA, Merryman CF, Maurer PH: Antigenicity of polypeptides (poly-alpha-amino acids). Distribution of sheep antibodies to polymers of alpha-L-amino acids of varying net electrical charge and lysozyme. Int Arch Allergy Appl Immunol 1970, 39:381-390.
-
(1970)
Int Arch Allergy Appl Immunol
, vol.39
, pp. 381-390
-
-
Stylos, W.A.1
Merryman, C.F.2
Maurer, P.H.3
-
31
-
-
0014906454
-
Antigenicity of polypeptides (poly-alpha-amino acids). Distribution of sheep antibodies to dinitrinophenyl-(DNP) conjugates of polymers of alpha-L-amino acids of varying electrical charge
-
Maurer PH, Merryman CF, Stylos WA: Antigenicity of polypeptides (poly-alpha-amino acids). Distribution of sheep antibodies to dinitrinophenyl-(DNP) conjugates of polymers of alpha-L-amino acids of varying electrical charge. Int Arch Allergy Appl Immunol 1970, 39:435-444.
-
(1970)
Int Arch Allergy Appl Immunol
, vol.39
, pp. 435-444
-
-
Maurer, P.H.1
Merryman, C.F.2
Stylos, W.A.3
-
32
-
-
33144482279
-
The Antigenic Properties of Some Synthetic Poly-Iminoacids. II. The Antigenicity of Polypeptides Related to Collagen; Peptides Containing Hydroxyproline and Acetyl-Hydroxy-Proline
-
Jasin HE, Glynn LE: The Antigenic Properties of Some Synthetic Poly-Iminoacids. II. The Antigenicity of Polypeptides Related to Collagen; Peptides Containing Hydroxyproline and Acetyl-Hydroxy-Proline. Immunology 1965, 32:260-269.
-
(1965)
Immunology
, vol.32
, pp. 260-269
-
-
Jasin, H.E.1
Glynn, L.E.2
-
33
-
-
0037434791
-
Structure of the extracellular region of HER2 alone and in complex with the Herceptin Fab
-
Cho HS, Mason K, Ramyar KX, Stanley AM, Gabelli SB, Denney DWJ, Leahy DJ: Structure of the extracellular region of HER2 alone and in complex with the Herceptin Fab. Nature 2003, 421:756-760.
-
(2003)
Nature
, vol.421
, pp. 756-760
-
-
Cho, H.S.1
Mason, K.2
Ramyar, K.X.3
Stanley, A.M.4
Gabelli, S.B.5
Denney, D.W.J.6
Leahy, D.J.7
-
35
-
-
0030332515
-
The megaprior heuristic for discovering protein sequence patterns
-
Bailey TL, Gribskov M: The megaprior heuristic for discovering protein sequence patterns. Proc Int Conf Intell Syst Mol Biol 1996, 4:15-24.
-
(1996)
Proc Int Conf Intell Syst Mol Biol
, vol.4
, pp. 15-24
-
-
Bailey, T.L.1
Gribskov, M.2
-
36
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers. AAAI; 1994:28-36.
-
(1994)
AAAI
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
37
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
Bailey TL, Gribskov M: Combining evidence using p-values: application to sequence homology searches. Bioinformatics 1998, 14:48-54.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
38
-
-
0033639087
-
MASIA: Recognition of common patterns and properties in multiple aligned protein sequences
-
Zhu H, Schein CH, Braun W. MASIA: recognition of common patterns and properties in multiple aligned protein sequences. Bioinformatics 2000, 16:950-951.
-
(2000)
Bioinformatics
, vol.16
, pp. 950-951
-
-
Zhu, H.1
Schein, C.H.2
Braun, W.3
-
39
-
-
0001290045
-
PROSITE: A documented database using patterns and profiles as motif descriptors
-
Sigrist CJ, Cerutti L, Hulo N, Gattiker A, Falquet L, Ragni M, Bairoch A, Bucher P: PROSITE: a documented database using patterns and profiles as motif descriptors. Brief Bioinform 2002, 3:265-274.
-
(2002)
Brief Bioinform
, vol.3
, pp. 265-274
-
-
Sigrist, C.J.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
Ragni, M.6
Bairoch, A.7
Bucher, P.8
-
40
-
-
25144444402
-
Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin
-
Ecale Zhou CL, Zemla AT, Roe D, Young M, Lam M, Schoeniger JS, Balhorn R: Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin. Bioinformatics 2005, 21:3089-3096.
-
(2005)
Bioinformatics
, vol.21
, pp. 3089-3096
-
-
Ecale Zhou, C.L.1
Zemla, A.T.2
Roe, D.3
Young, M.4
Lam, M.5
Schoeniger, J.S.6
Balhorn, R.7
-
41
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S, Henikoff JG: Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci U S A 1992, 89:10915-10919.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
42
-
-
0000228203
-
A model of evolutionary change in proteins. Matrices for detecting distant relationships
-
Edited by. Dayhoff MO. Washington DC, National biomedical research foundation
-
Dayhoff MO, Schwartz RM, Orcutt BC: A model of evolutionary change in proteins. matrices for detecting distant relationships. In In atlas of protein sequence and structure Volume vol. 5. Edited by. Dayhoff MO. Washington DC, National biomedical research foundation; 1978:345-358.
-
(1978)
Atlas of Protein Sequence and Structure Volume
, vol.5
, pp. 345-358
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
43
-
-
0017547820
-
A fast string searching algorithm
-
Boyer RS, Moore JS: A fast string searching algorithm. Commun ACM 1977, 20:762-772.
-
(1977)
Commun ACM
, vol.20
, pp. 762-772
-
-
Boyer, R.S.1
Moore, J.S.2
-
44
-
-
84874660787
-
-
RMA-NTHU
-
RMA-NTHU [http://bioinfo.life.nthu.edu.tw/rma/]
-
-
-
-
45
-
-
84874665971
-
-
RMA-NTOU
-
RMA-NTOU [http://spider.cs.ntou.edu.tw/bioinformatics/RMA]
-
-
-
-
46
-
-
84874649899
-
-
RMA guidelines
-
RMA guidelines [http://bioinfo.life.nthu.edu.tw/rma/RMA-DOCS]
-
-
-
-
47
-
-
1942424265
-
Construction and characterization of monoclonal antibodies specific to Epstein-Barr virus latent membrane protein I
-
Fang CY, Chang YS, Chow KP, Yu JS, Chang HY: Construction and characterization of monoclonal antibodies specific to Epstein-Barr virus latent membrane protein I. J Immunol Methods 2004, 287:21-30.
-
(2004)
J Immunol Methods
, vol.287
, pp. 21-30
-
-
Fang, C.Y.1
Chang, Y.S.2
Chow, K.P.3
Yu, J.S.4
Chang, H.Y.5
-
48
-
-
14344274198
-
Three-dimensional structure of human RNase 1 delta N7 at 1.9 A resolution
-
Pous J, Mallorqui-Fernandez G, Peracaula R, Terzyan SS, Futami J, Tada H, Yamada H, Seno M, de Llorens R, Gomis-Ruth FX, Coll M: Three-dimensional structure of human RNase 1 delta N7 at 1.9 A resolution. Acta Crystallogr D Biol Crystallogr 2001, 57:498-505.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, pp. 498-505
-
-
Pous, J.1
Mallorqui-Fernandez, G.2
Peracaula, R.3
Terzyan, S.S.4
Futami, J.5
Tada, H.6
Yamada, H.7
Seno, M.8
de Llorens, R.9
Gomis-Ruth, F.X.10
Coll, M.11
-
49
-
-
0037066104
-
Atomic resolution (0.98 A) structure of eosinophil-derived neurotoxin
-
Swaminathan GJ, Holloway DE, Veluraja K, Acharya KR: Atomic resolution (0.98 A) structure of eosinophil-derived neurotoxin. Biochemistry 2002, 41:3341-3352.
-
(2002)
Biochemistry
, vol.41
, pp. 3341-3352
-
-
Swaminathan, G.J.1
Holloway, D.E.2
Veluraja, K.3
Acharya, K.R.4
-
50
-
-
0033592925
-
Crystal Structure of Eosinophil Cationic Protein at 2.4 A Resolution
-
Boix E, Leonidas DD, Nikolovski Z, Nogues MV, Cuchillo CM, Acharya KR: Crystal Structure of Eosinophil Cationic Protein at 2.4 A Resolution. Biochemistry 1999, 38:16794-16801.
-
(1999)
Biochemistry
, vol.38
, pp. 16794-16801
-
-
Boix, E.1
Leonidas, D.D.2
Nikolovski, Z.3
Nogues, M.V.4
Cuchillo, C.M.5
Acharya, K.R.6
-
51
-
-
0033534398
-
The three-dimensional structure of human RNase 4, unliganded and complexed with d(Up), reveals the basis for its uridine selectivity
-
Terzyan SS, Peracaula R, de Llorens R, Tsushima Y, Yamada H, Seno M, Gomis-Ruth FX, Coll M: The three-dimensional structure of human RNase 4, unliganded and complexed with d(Up), reveals the basis for its uridine selectivity. J Mol Biol 1999, 285:205-214.
-
(1999)
J Mol Biol
, vol.285
, pp. 205-214
-
-
Terzyan, S.S.1
Peracaula, R.2
de Llorens, R.3
Tsushima, Y.4
Yamada, H.5
Seno, M.6
Gomis-Ruth, F.X.7
Coll, M.8
-
52
-
-
0037162799
-
Structure of the extracellular region of HER3 reveals an interdomain tether
-
Cho HS, Leahy DJ: Structure of the extracellular region of HER3 reveals an interdomain tether. Science 2002, 297:1330-1333.
-
(2002)
Science
, vol.297
, pp. 1330-1333
-
-
Cho, H.S.1
Leahy, D.J.2
-
53
-
-
0021111042
-
Structure of ribonuclease A: Results of joint neutron and X-ray refinement at 2.0-A resolution
-
Wlodawer A, Sjolin L: Structure of ribonuclease A: results of joint neutron and X-ray refinement at 2.0-A resolution. Biochemistry 1983, 22:2720-2728.
-
(1983)
Biochemistry
, vol.22
, pp. 2720-2728
-
-
Wlodawer, A.1
Sjolin, L.2
|