메뉴 건너뛰기




Volumn 120, Issue 1, 2006, Pages 71-79

A statistical approach for analyzing structural and regulative information in prokaryotic genomes

Author keywords

Aminoacid frequency and GC content in prokaryotes; Curvature and flexibility in gene sequences; Genetic code and regulative information; Statistical approach in prokaryotic genomes

Indexed keywords

AMINO ACID; CYTOSINE; GUANINE; PURINE;

EID: 32844462138     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bpc.2005.09.020     Document Type: Article
Times cited : (1)

References (28)
  • 2
    • 0025078851 scopus 로고
    • Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature
    • P. De Santis, A. Palleschi, M. Savino, and A. Scipioni Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature Biochemistry 29 1990 9269 9273
    • (1990) Biochemistry , vol.29 , pp. 9269-9273
    • De Santis, P.1    Palleschi, A.2    Savino, M.3    Scipioni, A.4
  • 4
    • 0030572367 scopus 로고    scopus 로고
    • Sequence-dependent circularization of DNAs: A physical model to predict the DNA sequence dependent propensity to circularization and its changes in the presence of protein-induced bending
    • P. De Santis, M. Fuà, M. Savino, C. Anselmi, and G. Bocchinfuso Sequence-dependent circularization of DNAs: a physical model to predict the DNA sequence dependent propensity to circularization and its changes in the presence of protein-induced bending J. Phys. Chem. 100 1996 9968 9976
    • (1996) J. Phys. Chem. , vol.100 , pp. 9968-9976
    • De Santis, P.1    Fuà, M.2    Savino, M.3    Anselmi, C.4    Bocchinfuso, G.5
  • 5
    • 0001448835 scopus 로고    scopus 로고
    • Statistical thermodynamic approach for evaluating the writhe transformations in circular DNAs
    • C. Anselmi, G. Bocchinfuso, P. De Santis, M. Fuà, A. Scipioni, and M. Savino Statistical thermodynamic approach for evaluating the writhe transformations in circular DNAs J. Phys. Chem., B 102 1998 5704 5714
    • (1998) J. Phys. Chem., B , vol.102 , pp. 5704-5714
    • Anselmi, C.1    Bocchinfuso, G.2    De Santis, P.3    Fuà, M.4    Scipioni, A.5    Savino, M.6
  • 6
    • 0033548524 scopus 로고    scopus 로고
    • Dual role of DNA intrinsic curvature and flexibility in determining nucleosome stability
    • C. Anselmi, G. Bocchinfuso, P. De Santis, M. Savino, and A. Scipioni Dual role of DNA intrinsic curvature and flexibility in determining nucleosome stability J. Mol. Biol. 286 1999 1293 1301
    • (1999) J. Mol. Biol. , vol.286 , pp. 1293-1301
    • Anselmi, C.1    Bocchinfuso, G.2    De Santis, P.3    Savino, M.4    Scipioni, A.5
  • 7
    • 0033869101 scopus 로고    scopus 로고
    • A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability
    • C. Anselmi, G. Bocchinfuso, P. De Santis, M. Savino, and A. Scipioni A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability Biophys. J. 79 2000 601 613
    • (2000) Biophys. J. , vol.79 , pp. 601-613
    • Anselmi, C.1    Bocchinfuso, G.2    De Santis, P.3    Savino, M.4    Scipioni, A.5
  • 9
    • 0036840332 scopus 로고    scopus 로고
    • Sequence-dependent DNA curvature and flexibility from scanning force microscopy images
    • A. Scipioni, C. Anselmi, G. Zuccheri, B. Samorì, and P. De Santis Sequence-dependent DNA curvature and flexibility from scanning force microscopy images Biophys. J. 83 2002 2408 2418
    • (2002) Biophys. J. , vol.83 , pp. 2408-2418
    • Scipioni, A.1    Anselmi, C.2    Zuccheri, G.3    Samorì, B.4    De Santis, P.5
  • 10
    • 0030995510 scopus 로고    scopus 로고
    • Distribution of sequence-dependent curvature in genomic DNA sequences
    • A. Gabrielan, K. Vlahovicek, and S. Pongor Distribution of sequence-dependent curvature in genomic DNA sequences FEBS Lett. 406 1997 69 74
    • (1997) FEBS Lett. , vol.406 , pp. 69-74
    • Gabrielan, A.1    Vlahovicek, K.2    Pongor, S.3
  • 11
    • 0034660586 scopus 로고    scopus 로고
    • The global intrinsic curvature of archaeal and eubacterial genomes is mostly contained in their dinucleotide composition and is probably not an adaptation
    • E. Merino, and A. Garciarrubio The global intrinsic curvature of archaeal and eubacterial genomes is mostly contained in their dinucleotide composition and is probably not an adaptation Nucleic Acids Res. 28 2000 2431 2438
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2431-2438
    • Merino, E.1    Garciarrubio, A.2
  • 12
    • 0035214484 scopus 로고    scopus 로고
    • Bendable genes of warm-blooded vertebrates
    • A.E. Vinogradov Bendable genes of warm-blooded vertebrates Mol. Biol. Evol. 18 2001 2195 2200
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2195-2200
    • Vinogradov, A.E.1
  • 14
    • 11044225797 scopus 로고    scopus 로고
    • CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data
    • P.F. Hallin, and D.W. Ussery CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data Bioinformatics 20 2004 3682 3686
    • (2004) Bioinformatics , vol.20 , pp. 3682-3686
    • Hallin, P.F.1    Ussery, D.W.2
  • 15
    • 20344396385 scopus 로고    scopus 로고
    • Structural properties of promoters: Similarities and differences between prokariotes and eukaryotes
    • A. Kanhere, and M. Bansal Structural properties of promoters: similarities and differences between prokariotes and eukaryotes Nucleic Acids Res. 33 2005 3165 3175
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3165-3175
    • Kanhere, A.1    Bansal, M.2
  • 16
    • 2442700633 scopus 로고    scopus 로고
    • Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information
    • M.J.L. De Hoon, S. Imoto, K. Kobayashi, N. Ogasawara, and S. Miyano Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information Pac. Symp. Biocomput. 2004 276 287
    • (2004) Pac. Symp. Biocomput. , pp. 276-287
    • De Hoon, M.J.L.1    Imoto, S.2    Kobayashi, K.3    Ogasawara, N.4    Miyano, S.5
  • 18
    • 0028931709 scopus 로고
    • B-DNA twisting correlates with base-pair morphology
    • A.A. Gorin, V.B. Zhurkin, and W.K. Olson B-DNA twisting correlates with base-pair morphology J. Mol. Biol. 247 1995 34 48
    • (1995) J. Mol. Biol. , vol.247 , pp. 34-48
    • Gorin, A.A.1    Zhurkin, V.B.2    Olson, W.K.3
  • 20
    • 84985667623 scopus 로고
    • Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles
    • O. Gotoh, and Y. Tagashira Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles Biopolymers 20 1981 1033 1042
    • (1981) Biopolymers , vol.20 , pp. 1033-1042
    • Gotoh, O.1    Tagashira, Y.2
  • 21
    • 0032213753 scopus 로고    scopus 로고
    • Inherent DNA curvature and flexibility correlate with TATA box functionality
    • O.N. De Souza, and R.L. Ornstein Inherent DNA curvature and flexibility correlate with TATA box functionality Biopolymers 46 2000 403 415
    • (2000) Biopolymers , vol.46 , pp. 403-415
    • De Souza, O.N.1    Ornstein, R.L.2
  • 23
    • 0025104361 scopus 로고
    • Compositional pattern in the nuclear genome of cold-blooded vertebrates
    • G. Bernardi, and G. Bernardi Compositional pattern in the nuclear genome of cold-blooded vertebrates J. Mol. Evol. 31 1990 265 281
    • (1990) J. Mol. Evol. , vol.31 , pp. 265-281
    • Bernardi, G.1    Bernardi, G.2
  • 25
    • 0033991967 scopus 로고    scopus 로고
    • Isochores and the evolutionary genomics of vertebrates
    • G. Bernardi Isochores and the evolutionary genomics of vertebrates Gene 241 2000 3 17
    • (2000) Gene , vol.241 , pp. 3-17
    • Bernardi, G.1
  • 26
    • 0031984373 scopus 로고    scopus 로고
    • Compositional properties of homologous coding sequences from plants
    • N. Carels, P. Hatey, K. Jabbary, and G. Bernardi Compositional properties of homologous coding sequences from plants J. Mol. Evol. 46 1998 45 53
    • (1998) J. Mol. Evol. , vol.46 , pp. 45-53
    • Carels, N.1    Hatey, P.2    Jabbary, K.3    Bernardi, G.4
  • 27
    • 0034117544 scopus 로고    scopus 로고
    • Two classes of genes in plants
    • N. Carels, and G. Bernardi Two classes of genes in plants Genetics 154 2000 1819 1825
    • (2000) Genetics , vol.154 , pp. 1819-1825
    • Carels, N.1    Bernardi, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.